MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP043185 Location: 140259..161933 Organism: Escherichia coli O16:H48 strain PG20180171 Replicon: chromosome
Accession: NZ_CP043185 Location: 140259..161933 Organism: Escherichia coli O16:H48 strain PG20180171 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FYA18_RS22720 () | 136248..136295 | + | 48 | WP_211180494.1 | protein YnaN | - |
| FYA18_RS00690 () | 136309..137292 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| FYA18_RS00695 () | 137770..139143 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| FYA18_RS00700 () | 139272..140207 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| FYA18_RS00705 () | 140259..141494 | - | 1236 | WP_000040852.1 | HTH-type transcriptional regulator LeuO ; Integrase | Integrase |
| FYA18_RS00710 () | 141496..141711 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| FYA18_RS00715 () | 141790..141999 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 141815..141993 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 141815..141993 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 141815..141993 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 141815..141993 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| FYA18_RS00720 () | 141992..142186 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| FYA18_RS00725 () | 142243..143052 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| FYA18_RS00730 () | 143045..145645 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| FYA18_RS00735 () | 145747..146022 | - | 276 | WP_000632297.1 | protein RacC | - |
| FYA18_RS00740 () | 146097..146267 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| FYA18_RS00745 () | 146267..146488 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| FYA18_RS00750 () | 146930..147418 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| FYA18_RS00755 () | 147415..147570 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| FYA18_RS00765 () | 148024..148500 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| FYA18_RS00770 () | 148624..148920 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| FYA18_RS00775 () | 148943..149365 | + | 423 | WP_000693797.1 | phage protein | - |
| FYA18_RS00780 () | 149378..150235 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| FYA18_RS00785 () | 150242..150988 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| FYA18_RS00790 () | 151011..151463 | + | 453 | Protein_154 | DUF1627 domain-containing protein | - |
| FYA18_RS00795 () | 151659..151844 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| FYA18_RS00800 () | 152041..153498 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| FYA18_RS00805 () | 153636..153899 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| FYA18_RS00810 () | 153880..154239 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| FYA18_RS00820 () | 154713..155645 | + | 933 | Protein_159 | phage tail length tape measure family protein | - |
| FYA18_RS00825 () | 155648..155863 | + | 216 | Protein_160 | Ail/Lom family outer membrane beta-barrel protein | - |
| FYA18_RS00830 () | 156005..156985 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| FYA18_RS00835 () | 157055..157243 | + | 189 | Protein_162 | Ail/Lom family outer membrane beta-barrel protein | - |
| FYA18_RS00840 () | 157308..160670 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| FYA18_RS00845 () | 160670..161245 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| FYA18_RS00850 () | 161343..161933 | - | 591 | WP_000086525.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FYA18_RS00855 () | 162250..162483 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| FYA18_RS00860 () | 162552..162665 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| FYA18_RS00865 () | 163444..163878 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| FYA18_RS00870 () | 164019..165152 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |