MGE detailed information
MGE type: Prophage MGE length: 21674 bp
Accession: NZ_CP040664 Location: 1399878..1421551 Organism: Escherichia coli strain KR2009 Replicon: chromosome
Accession: NZ_CP040664 Location: 1399878..1421551 Organism: Escherichia coli strain KR2009 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE384_RS22465 () | 1395868..1395915 | + | 48 | WP_211180494.1 | protein YnaN | - |
| FE384_RS06880 () | 1395929..1396912 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| FE384_RS06885 () | 1397389..1398762 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| FE384_RS06890 () | 1398891..1399826 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| FE384_RS06895 () | 1399878..1401113 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| FE384_RS06900 () | 1401115..1401330 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| FE384_RS06905 () | 1401409..1401618 | - | 210 | WP_138817846.1 | double-strand break reduction protein RcbA | - |
| - () | 1401434..1401612 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1401434..1401612 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1401434..1401612 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1401434..1401612 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| FE384_RS06910 () | 1401611..1401805 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| FE384_RS06915 () | 1401862..1402671 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| FE384_RS06920 () | 1402664..1405264 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| FE384_RS06925 () | 1405366..1405640 | - | 275 | Protein_1344 | hypothetical protein | - |
| FE384_RS06930 () | 1405715..1405885 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| FE384_RS06935 () | 1405885..1406106 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| FE384_RS06940 () | 1406548..1407036 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| FE384_RS06945 () | 1407033..1407188 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| FE384_RS06955 () | 1407642..1408118 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| FE384_RS06960 () | 1408242..1408538 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| FE384_RS06965 () | 1408561..1408983 | + | 423 | WP_000693797.1 | phage protein | - |
| FE384_RS06970 () | 1408996..1409853 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| FE384_RS06975 () | 1409860..1410606 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| FE384_RS06980 () | 1410629..1411081 | + | 453 | Protein_1354 | DUF1627 domain-containing protein | - |
| FE384_RS06985 () | 1411277..1411462 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| FE384_RS06990 () | 1411659..1413116 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| FE384_RS06995 () | 1413254..1413517 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| FE384_RS07000 () | 1413498..1413857 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| FE384_RS07010 () | 1414331..1415263 | + | 933 | Protein_1359 | phage tail length tape measure family protein | - |
| FE384_RS07015 () | 1415266..1415481 | + | 216 | Protein_1360 | Ail/Lom family outer membrane beta-barrel protein | - |
| FE384_RS07020 () | 1415623..1416603 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| FE384_RS07025 () | 1416673..1416861 | + | 189 | Protein_1362 | Ail/Lom family outer membrane beta-barrel protein | - |
| FE384_RS07030 () | 1416926..1420288 | + | 3363 | WP_138817847.1 | prophage tail fiber N-terminal domain-containing protein | - |
| FE384_RS07035 () | 1420288..1420863 | + | 576 | WP_138817848.1 | tail fiber assembly protein | - |
| FE384_RS07040 () | 1420961..1421551 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FE384_RS07045 () | 1421868..1422101 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| FE384_RS07050 () | 1422170..1422283 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| FE384_RS07055 () | 1423062..1423496 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| FE384_RS07060 () | 1423637..1424770 | - | 1134 | WP_138795931.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.01 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0.002 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0.002 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0.002 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0.002 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0.002 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0.002 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0.002 |