MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP040643 Location: 1545964..1567638 Organism: Escherichia coli strain BE104 Replicon: chromosome
Accession: NZ_CP040643 Location: 1545964..1567638 Organism: Escherichia coli strain BE104 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGC38_RS23505 () | 1541953..1542000 | + | 48 | WP_211180494.1 | protein YnaN | - |
| FGC38_RS07745 () | 1542014..1542997 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| FGC38_RS07750 () | 1543475..1544848 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| FGC38_RS07755 () | 1544977..1545912 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| FGC38_RS07760 () | 1545964..1547199 | - | 1236 | WP_000040852.1 | site-specific integrase | - |
| FGC38_RS07765 () | 1547201..1547416 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| FGC38_RS07770 () | 1547495..1547704 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1547520..1547698 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1547520..1547698 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1547520..1547698 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1547520..1547698 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| FGC38_RS07775 () | 1547697..1547891 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| FGC38_RS07780 () | 1547948..1548757 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| FGC38_RS07785 () | 1548750..1551350 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| FGC38_RS07790 () | 1551452..1551727 | - | 276 | WP_000632297.1 | protein RacC | - |
| FGC38_RS07795 () | 1551802..1551972 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| FGC38_RS07800 () | 1551972..1552193 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| FGC38_RS07805 () | 1552635..1553123 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| FGC38_RS07810 () | 1553120..1553275 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| FGC38_RS07820 () | 1553729..1554205 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| FGC38_RS07825 () | 1554329..1554625 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| FGC38_RS07830 () | 1554648..1555070 | + | 423 | WP_000693797.1 | phage protein | - |
| FGC38_RS07835 () | 1555083..1555940 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| FGC38_RS07840 () | 1555947..1556693 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| FGC38_RS07845 () | 1556716..1557168 | + | 453 | Protein_1517 | DUF1627 domain-containing protein | - |
| FGC38_RS07850 () | 1557364..1557549 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| FGC38_RS07855 () | 1557746..1559203 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| FGC38_RS07860 () | 1559341..1559604 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| FGC38_RS07865 () | 1559585..1559944 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| FGC38_RS07875 () | 1560418..1561350 | + | 933 | Protein_1522 | phage tail length tape measure family protein | - |
| FGC38_RS07880 () | 1561353..1561568 | + | 216 | Protein_1523 | Ail/Lom family outer membrane beta-barrel protein | - |
| FGC38_RS07885 () | 1561710..1562690 | - | 981 | WP_000019448.1 | IS5-like element ISKpn26 family transposase | - |
| FGC38_RS07890 () | 1562760..1562948 | + | 189 | Protein_1525 | Ail/Lom family outer membrane beta-barrel protein | - |
| FGC38_RS07895 () | 1563013..1566375 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| FGC38_RS07900 () | 1566375..1566950 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| FGC38_RS07905 () | 1567048..1567638 | - | 591 | WP_000086527.1 | recombinase family protein | - |
| FGC38_RS07910 () | 1567955..1568188 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| FGC38_RS07915 () | 1568257..1568370 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| FGC38_RS07920 () | 1569149..1569583 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| FGC38_RS07925 () | 1569724..1570857 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |