MGE detailed information
MGE type: Conjugative plasmid MGE length: 89216 bp
Accession: NZ_CP038417 Location: 1..89216 Organism: Escherichia coli O157:H7 strain 3-5-1 Replicon: plasmid pGM351-2
Accession: NZ_CP038417 Location: 1..89216 Organism: Escherichia coli O157:H7 strain 3-5-1 Replicon: plasmid pGM351-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4U90_RS27030 () | 46..1077 | + | 1032 | WP_000907873.1 | replication initiation protein | - |
| E4U90_RS27035 () | 1773..1931 | + | 159 | WP_000841008.1 | hypothetical protein | - |
| E4U90_RS27040 () | 1986..2255 | + | 270 | WP_171879976.1 | hypothetical protein | Antitoxin Detail |
| E4U90_RS27045 () | 2252..2533 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| E4U90_RS27050 () | 2573..3421 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| E4U90_RS27055 () | 3538..4011 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| E4U90_RS27060 () | 4754..5248 | - | 495 | WP_023278058.1 | hypothetical protein | - |
| E4U90_RS27065 () | 5304..5906 | - | 603 | WP_000517689.1 | hypothetical protein | - |
| E4U90_RS27070 () | 6260..7606 | + | 1347 | WP_001132021.1 | hypothetical protein | - |
| E4U90_RS27075 () | 7885..9765 | + | 1881 | WP_001474701.1 | colicin 1A | - |
| E4U90_RS27080 () | 9787..10122 | - | 336 | WP_001080730.1 | colicin 1A immunity protein | - |
| E4U90_RS27085 () | 10251..10598 | + | 348 | WP_000142441.1 | hypothetical protein | - |
| E4U90_RS27090 () | 10616..11206 | - | 591 | WP_000194573.1 | hypothetical protein | - |
| E4U90_RS27095 () | 11206..11463 | - | 258 | WP_000371885.1 | hypothetical protein | - |
| E4U90_RS27100 () | 12031..12444 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| E4U90_RS27105 () | 12446..13225 | + | 780 | WP_151310090.1 | site-specific integrase | - |
| E4U90_RS27110 () | 13405..14049 | + | 645 | WP_001144036.1 | ParA family protein | - |
| E4U90_RS27115 () | 14136..14444 | + | 309 | WP_119014982.1 | molecular chaperone GroEL | - |
| E4U90_RS27120 () | 14857..15837 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| E4U90_RS27125 () | 15830..16246 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| E4U90_RS27130 () | 16248..17522 | - | 1275 | WP_171879977.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| E4U90_RS27135 () | 17522..17959 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| E4U90_RS27140 () | 17956..18204 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| E4U90_RS27145 () | 18622..19524 | + | 903 | WP_089603312.1 | DUF1281 domain-containing protein | - |
| E4U90_RS27150 () | 19521..19832 | + | 312 | WP_014640311.1 | hypothetical protein | - |
| E4U90_RS27155 () | 19908..20591 | + | 684 | WP_000086148.1 | DNA methylase | - |
| E4U90_RS27160 () | 20592..20813 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| E4U90_RS27165 () | 20827..21261 | + | 435 | WP_001611800.1 | DUF1380 family protein | - |
| E4U90_RS27170 () | 21307..21532 | + | 226 | Protein_28 | hypothetical protein | - |
| E4U90_RS27175 () | 21956..22482 | + | 527 | Protein_29 | YubH family protein | - |
| E4U90_RS27180 () | 22620..22922 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| E4U90_RS27185 () | 22969..23391 | + | 423 | WP_000271682.1 | DUF1380 family protein | - |
| E4U90_RS27190 () | 23388..23579 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| E4U90_RS27195 () | 23913..23981 | - | 69 | Protein_33 | pilus protein | - |
| E4U90_RS27200 () | 24350..24877 | + | 528 | WP_001276114.1 | single-stranded DNA-binding protein | - |
| E4U90_RS27205 () | 24935..25168 | + | 234 | WP_000005985.1 | DUF905 family protein | - |
| E4U90_RS27210 () | 25227..27185 | + | 1959 | WP_001145462.1 | ParB/RepB/Spo0J family partition protein | - |
| E4U90_RS27215 () | 27240..27674 | + | 435 | WP_000845904.1 | conjugation system SOS inhibitor PsiB | - |
| E4U90_RS27220 () | 27671..28390 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| E4U90_RS27225 () | 28387..28983 | + | 597 | WP_171879978.1 | hypothetical protein | - |
| E4U90_RS27230 () | 29055..29525 | + | 471 | WP_001671344.1 | YubH family protein | - |
| E4U90_RS27235 () | 29446..29946 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| E4U90_RS27240 () | 30086..30385 | - | 300 | WP_001348082.1 | hypothetical protein | - |
| E4U90_RS27245 () | 30675..31109 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| E4U90_RS27250 () | 31203..31469 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| E4U90_RS27255 () | 31534..32424 | + | 891 | WP_000038332.1 | Recombination-promoting nuclease RpnA | VF |
| E4U90_RS27260 () | 32424..32669 | + | 246 | WP_001260884.1 | hypothetical protein | - |
| E4U90_RS27265 () | 32700..32951 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| E4U90_RS27270 () | 32985..33182 | - | 198 | WP_001161115.1 | hypothetical protein | - |
| E4U90_RS27275 () | 33531..34379 | + | 849 | WP_001077019.1 | DUF4942 domain-containing protein | - |
| E4U90_RS27280 () | 34465..34800 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| E4U90_RS27285 () | 35034..35366 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| E4U90_RS27290 () | 35377..38076 | + | 2700 | WP_001405892.1 | Protein TraI | Relaxase |
| E4U90_RS27295 () | 38113..40404 | - | 2292 | WP_001289276.1 | hypothetical protein | - |
| E4U90_RS27300 () | 40397..41467 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| E4U90_RS27305 () | 41486..42694 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 42874..42931 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 42874..42931 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 42874..42931 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 42874..42931 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| E4U90_RS27310 () | 42986..43138 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| E4U90_RS27315 () | 43210..43461 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| E4U90_RS27320 () | 44120..44296 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| E4U90_RS27325 () | 44688..44897 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| E4U90_RS27330 () | 44969..45619 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| E4U90_RS27335 () | 45693..47861 | - | 2169 | WP_001774191.1 | DotA/TraY family protein | - |
| E4U90_RS27340 () | 47958..48542 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| E4U90_RS27345 () | 48571..49773 | - | 1203 | WP_001385654.1 | IncI1-type conjugal transfer protein TraW | - |
| E4U90_RS27350 () | 49740..50354 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| E4U90_RS27355 () | 50354..53398 | - | 3045 | WP_001024786.1 | IncI1-type conjugal transfer protein TraU | - |
| E4U90_RS27360 () | 53488..54288 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| E4U90_RS27365 () | 54272..54460 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| E4U90_RS27370 () | 54524..54928 | - | 405 | WP_000086959.1 | IncI1-type conjugal transfer protein TraR | - |
| E4U90_RS27375 () | 54979..55506 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| E4U90_RS27380 () | 55506..56210 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| E4U90_RS27385 () | 56210..57499 | - | 1290 | WP_171879979.1 | conjugal transfer protein TraO | - |
| E4U90_RS27390 () | 57502..58485 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| E4U90_RS27395 () | 58496..59188 | - | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| E4U90_RS27400 () | 59185..59532 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| E4U90_RS27405 () | 59550..63317 | - | 3768 | WP_052983927.1 | DNA primase | - |
| E4U90_RS27410 () | 63408..63959 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| E4U90_RS27415 () | 63974..64264 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| E4U90_RS27420 () | 64261..65409 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| E4U90_RS27425 () | 65406..66224 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| E4U90_RS27430 () | 66221..66679 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| E4U90_RS27435 () | 67074..67658 | - | 585 | WP_000977523.1 | histidine phosphatase family protein | - |
| E4U90_RS27440 () | 67718..68920 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| E4U90_RS27445 () | 69005..69829 | - | 825 | WP_001238935.1 | hypothetical protein | - |
| E4U90_RS27450 () | 69980..71134 | - | 1155 | WP_001139958.1 | integrase | - |
| E4U90_RS27455 () | 71133..71219 | + | 87 | Protein_85 | shufflon protein D' | - |
| E4U90_RS27460 () | 71268..71486 | + | 219 | WP_071527775.1 | shufflon protein D' | - |
| E4U90_RS27465 () | 72576..72773 | + | 198 | WP_032159596.1 | hypothetical protein | - |
| E4U90_RS27470 () | 72770..74194 | - | 1425 | WP_171879980.1 | hypothetical protein | VF |
| E4U90_RS27475 () | 74194..74850 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| E4U90_RS27480 () | 74835..75395 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| E4U90_RS27485 () | 75405..76019 | - | 615 | WP_000959785.1 | hypothetical protein | VF |
| E4U90_RS27490 () | 76037..77134 | - | 1098 | WP_171879981.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| E4U90_RS27495 () | 77147..78700 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| E4U90_RS27500 () | 78711..79163 | - | 453 | WP_001247336.1 | hypothetical protein | VF |
| E4U90_RS27505 () | 79150..80445 | - | 1296 | WP_000752774.1 | type 4b pilus protein PilO2 | - |
| E4U90_RS27510 () | 80438..82120 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| E4U90_RS27515 () | 82134..82571 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| E4U90_RS27520 () | 82571..83638 | - | 1068 | WP_000742600.1 | hypothetical protein | VF |
| E4U90_RS27525 () | 84312..84764 | - | 453 | WP_000008892.1 | hypothetical protein | - |
| E4U90_RS27530 () | 84807..85061 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| E4U90_RS27535 () | 85329..85895 | - | 567 | WP_000776428.1 | hypothetical protein | - |
| E4U90_RS27540 () | 85909..86592 | - | 684 | WP_000213857.1 | conjugal transfer protein TraC | - |
| E4U90_RS27545 () | 86846..87379 | - | 534 | WP_001303319.1 | transcription termination factor NusG | - |
| E4U90_RS27550 () | 87821..88108 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| E4U90_RS27555 () | 88026..88289 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli | Conjugative plasmid | TA10119, TA30466 | NC_025198 | 1..92339 | 0.009 |