MGE detailed information
MGE type: Prophage MGE length: 48529 bp
Accession: NZ_CP037923 Location: 407819..456347 Organism: Shigella flexneri 5a str. M90T Replicon: chromosome
Accession: NZ_CP037923 Location: 407819..456347 Organism: Shigella flexneri 5a str. M90T Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKN05_RS02045 (EKN05_002055) | 403430..403792 | + | 363 | WP_000108294.1 | 6-carboxytetrahydropterin synthase QueD | - |
| EKN05_RS02050 (EKN05_002060) | 403870..405141 | + | 1272 | WP_005070644.1 | FAD-dependent oxidoreductase | - |
| EKN05_RS02055 (EKN05_002065) | 405132..405392 | + | 261 | WP_000109522.1 | ferredoxin family protein | - |
| EKN05_RS25520 (EKN05_002070) | 405608..405688 | + | 81 | Protein_397 | hypothetical protein | - |
| EKN05_RS02065 (EKN05_002075) | 405698..405784 | - | 87 | Protein_398 | transposase | - |
| EKN05_RS02070 (EKN05_002080) | 405876..407639 | + | 1764 | WP_000801164.1 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| EKN05_RS02080 (EKN05_002090) | 407819..408442 | - | 624 | WP_000930151.1 | DUF4376 domain-containing protein | - |
| EKN05_RS02085 (EKN05_002095) | 408393..409808 | - | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| EKN05_RS02090 (EKN05_002100) | 409872..410471 | - | 600 | WP_001230369.1 | Outer membrane protein X | VF |
| EKN05_RS02095 (EKN05_002105) | 410539..414018 | - | 3480 | WP_000515521.1 | host specificity protein J | - |
| EKN05_RS02100 (EKN05_002110) | 414079..414622 | - | 544 | Protein_404 | tail assembly protein | - |
| EKN05_RS02105 (EKN05_002115) | 414619..415362 | - | 744 | WP_000194737.1 | C40 family peptidase | - |
| EKN05_RS02110 (EKN05_002120) | 415367..416065 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| EKN05_RS25355 | 416060..416308 | - | 249 | Protein_407 | phage tail protein | - |
| EKN05_RS02115 (EKN05_002125) | 416308..419350 | - | 3043 | Protein_408 | phage tail tape measure protein | - |
| EKN05_RS02120 (EKN05_002130) | 419322..419651 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| EKN05_RS02125 (EKN05_002135) | 419660..420046 | - | 387 | WP_000478927.1 | phage minor tail protein G | - |
| EKN05_RS02130 (EKN05_002140) | 420105..420845 | - | 741 | WP_000211137.1 | phage tail tube protein | - |
| EKN05_RS02135 (EKN05_002145) | 420856..421257 | - | 402 | WP_001079402.1 | phage minor tail U family protein | - |
| EKN05_RS02140 (EKN05_002150) | 421254..421835 | - | 582 | WP_000677139.1 | phage tail protein | - |
| EKN05_RS02145 (EKN05_002155) | 421822..422198 | - | 377 | Protein_414 | head-tail joining protein | - |
| EKN05_RS02150 (EKN05_002160) | 422210..422596 | - | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| EKN05_RS02155 (EKN05_002165) | 422648..423676 | - | 1029 | WP_000522637.1 | major capsid protein | - |
| EKN05_RS02160 (EKN05_002170) | 423734..424081 | - | 348 | WP_000256830.1 | head decoration protein | - |
| EKN05_RS02165 (EKN05_002175) | 424118..425623 | - | 1506 | WP_001254016.1 | S49 family peptidase | - |
| EKN05_RS02170 (EKN05_002180) | 425613..427206 | - | 1594 | Protein_419 | phage portal protein | - |
| EKN05_RS02175 (EKN05_002185) | 427203..427406 | - | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| EKN05_RS02180 (EKN05_002190) | 427390..429318 | - | 1929 | WP_001026849.1 | phage terminase large subunit family protein | - |
| EKN05_RS02185 (EKN05_002195) | 429290..429598 | - | 309 | Protein_422 | terminase small subunit | - |
| EKN05_RS02190 (EKN05_002200) | 429641..430680 | - | 1040 | Protein_423 | IS3 family transposase ISSd1 | Transposase |
| EKN05_RS02195 (EKN05_002205) | 430736..431945 | + | 1210 | Protein_424 | IS3 family transposase IS629 | Transposase |
| EKN05_RS02200 (EKN05_002210) | 431987..432106 | - | 120 | Protein_425 | IS3 family transposase ISSfl10 | Transposase |
| EKN05_RS02205 (EKN05_002215) | 432163..432375 | - | 213 | WP_005107083.1 | hypothetical protein | - |
| EKN05_RS25015 | 432772..432948 | + | 177 | WP_001205133.1 | hypothetical protein | - |
| EKN05_RS02220 (EKN05_002230) | 433256..433609 | - | 354 | WP_000439005.1 | hypothetical protein | - |
| EKN05_RS02225 (EKN05_002235) | 433740..434896 | + | 1157 | WP_094096554.1 | IS3 family transposase ISSd1 | Transposase |
| EKN05_RS02230 (EKN05_002240) | 434940..435119 | - | 180 | Protein_430 | Rha family transcriptional regulator | - |
| EKN05_RS25020 | 435322..435789 | - | 468 | WP_000092287.1 | lysis protein | - |
| EKN05_RS02240 (EKN05_002250) | 435786..436319 | - | 534 | WP_001274721.1 | lysozyme | - |
| EKN05_RS02245 (EKN05_002255) | 436385..437014 | - | 630 | WP_005083349.1 | hypothetical protein | - |
| EKN05_RS02250 (EKN05_002260) | 437018..437233 | - | 216 | WP_000839566.1 | class II holin family protein | - |
| EKN05_RS02275 (EKN05_002285) | 438036..438416 | - | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| EKN05_RS02280 (EKN05_002290) | 438409..438609 | - | 201 | WP_000111769.1 | protein ninH | - |
| EKN05_RS02285 (EKN05_002295) | 438704..438961 | - | 258 | WP_001064799.1 | hypothetical protein | - |
| EKN05_RS02290 (EKN05_002300) | 438958..440349 | - | 1392 | WP_000211321.1 | replicative DNA helicase | - |
| EKN05_RS02295 (EKN05_002305) | 440346..441224 | - | 879 | WP_000988183.1 | ATP-binding protein | - |
| EKN05_RS02300 (EKN05_002310) | 441235..442143 | - | 909 | WP_001247829.1 | hypothetical protein | - |
| EKN05_RS02305 (EKN05_002315) | 442130..442363 | - | 234 | WP_000618003.1 | hypothetical protein | - |
| EKN05_RS25530 | 442360..442812 | - | 453 | WP_232626950.1 | Rha family transcriptional regulator | - |
| EKN05_RS25535 | 442870..443328 | - | 459 | WP_000961309.1 | ash family protein | - |
| EKN05_RS02315 (EKN05_002325) | 443341..443571 | + | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EKN05_RS02320 (EKN05_002330) | 443561..443869 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| EKN05_RS02325 (EKN05_002335) | 443911..444087 | - | 177 | WP_024260406.1 | NinE family protein | - |
| EKN05_RS02330 (EKN05_002340) | 444084..444494 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| EKN05_RS02335 (EKN05_002345) | 444491..444769 | - | 279 | WP_005061104.1 | hypothetical protein | - |
| EKN05_RS02340 (EKN05_002350) | 444844..447750 | - | 2907 | WP_005105712.1 | toprim domain-containing protein | - |
| EKN05_RS02345 (EKN05_002355) | 447858..447974 | - | 117 | Protein_450 | helix-turn-helix domain-containing protein | - |
| EKN05_RS02350 (EKN05_002360) | 448026..449182 | + | 1157 | WP_136350409.1 | IS3 family transposase ISSd1 | Transposase |
| EKN05_RS02355 (EKN05_002365) | 449223..450164 | + | 942 | Protein_452 | tyrosine-type recombinase/integrase | - |
| EKN05_RS02360 (EKN05_002370) | 450263..450838 | + | 576 | Protein_453 | glycerol-3-phosphate responsive antiterminator | - |
| EKN05_RS02365 (EKN05_002375) | 450986..451846 | - | 861 | WP_005051545.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| EKN05_RS02370 (EKN05_002380) | 451843..452622 | - | 780 | WP_005051549.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| EKN05_RS02375 (EKN05_002385) | 452600..454009 | - | 1410 | WP_000147685.1 | MFS transporter | - |
| EKN05_RS02380 (EKN05_002390) | 454031..454882 | - | 852 | Protein_457 | FAD-binding oxidoreductase | - |
| EKN05_RS02385 (EKN05_002395) | 454940..455637 | + | 698 | WP_232626916.1 | IS1 family transposase IS1X2 | Transposase |
| EKN05_RS02390 (EKN05_002400) | 455676..456347 | - | 672 | WP_001199973.1 | 7-carboxy-7-deazaguanine synthase QueE | - |
| EKN05_RS25540 (EKN05_002405) | 456486..456626 | + | 141 | Protein_460 | cell envelope stress response protein YqcG | - |
| EKN05_RS02400 (EKN05_002410) | 456640..457512 | + | 873 | WP_001268465.1 | YgcG family protein | - |
| EKN05_RS02405 (EKN05_002415) | 457572..458870 | - | 1299 | WP_000036723.1 | phosphopyruvate hydratase | - |
| EKN05_RS02410 (EKN05_002420) | 458958..460595 | - | 1638 | WP_000210878.1 | CTP synthase (glutamine hydrolyzing) | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5 str. 8401 | Prophage | TA21664 | NC_008258 | 2754863..2803389 | 0.001 | |
| Shigella flexneri strain NCTC 9728 | Prophage | TA96017 | NZ_CP026799 | 905846..954372 | 0 |