MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 53947 bp
Accession: NZ_CP035239 Location: 968612..1022558 Organism: Streptococcus pneumoniae strain TVO_TIGR4 Replicon: chromosome
Accession: NZ_CP035239 Location: 968612..1022558 Organism: Streptococcus pneumoniae strain TVO_TIGR4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQH41_RS04775 (EQH41_05095) | 963713..964792 | + | 1080 | WP_001028831.1 | peptide chain release factor 1 | - |
| EQH41_RS04780 (EQH41_05100) | 964792..965631 | + | 840 | WP_000761894.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| EQH41_RS04785 (EQH41_05105) | 965615..966217 | + | 603 | WP_000969302.1 | L-threonylcarbamoyladenylate synthase | - |
| EQH41_RS04790 (EQH41_05110) | 966219..966650 | + | 432 | WP_000942962.1 | GNAT family N-acetyltransferase | - |
| EQH41_RS04795 (EQH41_05115) | 966712..967968 | + | 1257 | WP_000575527.1 | serine hydroxymethyltransferase | - |
| EQH41_RS04800 (EQH41_05120) | 967976..968950 | + | 975 | WP_000356096.1 | nucleoid-associated protein | - |
| EQH41_RS04805 (EQH41_05125) | 968950..969564 | + | 615 | WP_000476386.1 | cell wall hydrolase Pmp23 | - |
| EQH41_RS04810 (EQH41_05130) | 969638..970612 | + | 975 | WP_001227736.1 | DUF1002 domain-containing protein | - |
| EQH41_RS04815 (EQH41_05135) | 970686..972317 | + | 1632 | WP_000914584.1 | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | - |
| EQH41_RS04820 (EQH41_05140) | 972531..972809 | + | 279 | WP_000710803.1 | hypothetical protein | - |
| EQH41_RS04825 (EQH41_05145) | 973055..973273 | + | 219 | WP_001207345.1 | helix-turn-helix transcriptional regulator | - |
| EQH41_RS04830 (EQH41_05155) | 973666..974691 | + | 1026 | WP_000790743.1 | ABC transporter substrate-binding protein | - |
| EQH41_RS04835 (EQH41_05160) | 974681..975688 | + | 1008 | WP_001244687.1 | Ferric enterobactin transport system permease protein FepD | VF |
| EQH41_RS04840 (EQH41_05165) | 975688..976695 | + | 1008 | WP_001180357.1 | putative siderophore transport system permease protein YfhA | VF |
| EQH41_RS04845 (EQH41_05170) | 976695..977489 | + | 795 | WP_000677519.1 | putative siderophore transport system ATP-binding protein YusV | VF |
| EQH41_RS04850 | 977640..977824 | + | 185 | Protein_966 | IS3 family transposase | - |
| EQH41_RS04855 (EQH41_05175) | 977943..978266 | + | 324 | WP_229294054.1 | restriction endonuclease subunit S | - |
| EQH41_RS04860 | 978247..978546 | + | 300 | Protein_968 | hypothetical protein | - |
| EQH41_RS04865 (EQH41_05185) | 979230..979391 | + | 162 | WP_000368174.1 | hypothetical protein | - |
| EQH41_RS04870 (EQH41_05190) | 979483..981162 | + | 1680 | WP_000031829.1 | Serine recombinase PinR ; Integrase | Integrase |
| EQH41_RS04875 (EQH41_05195) | 981430..981996 | + | 567 | WP_000234983.1 | hypothetical protein | - |
| EQH41_RS04880 (EQH41_05200) | 982318..982506 | + | 189 | WP_000179769.1 | hypothetical protein | - |
| EQH41_RS04885 (EQH41_05205) | 982568..983326 | + | 759 | WP_000262024.1 | ATP-grasp domain-containing protein | - |
| EQH41_RS04890 (EQH41_05210) | 983384..984238 | + | 855 | WP_000900015.1 | ADP-ribosylglycohydrolase family protein | - |
| EQH41_RS04895 (EQH41_05215) | 984350..985234 | + | 885 | WP_000710115.1 | diacylglycerol kinase family lipid kinase | - |
| EQH41_RS04900 (EQH41_05225) | 985397..987136 | + | 1740 | Protein_976 | glycoside hydrolase family 13 protein | - |
| EQH41_RS04905 | 987411..987866 | + | 456 | Protein_977 | hypothetical protein | - |
| EQH41_RS04910 (EQH41_05240) | 988311..988787 | + | 477 | WP_000579608.1 | type II toxin-antitoxin system antitoxin PezA | Antitoxin Detail |
| EQH41_RS04915 (EQH41_05245) | 988787..989548 | + | 762 | WP_000405360.1 | type II toxin-antitoxin system toxin PezT | Toxin Detail |
| EQH41_RS04920 (EQH41_05250) | 989576..990352 | + | 777 | WP_001821017.1 | hypothetical protein | - |
| EQH41_RS04925 | 990355..990732 | + | 378 | WP_000530001.1 | hypothetical protein | - |
| EQH41_RS04930 (EQH41_05260) | 991564..991920 | + | 357 | WP_000817623.1 | SAG1252 family conjugative relaxosome accessory protein | - |
| EQH41_RS04935 (EQH41_05265) | 991925..992290 | + | 366 | WP_000401239.1 | MobC family plasmid mobilization relaxosome protein | - |
| EQH41_RS04940 (EQH41_05270) | 992277..994100 | + | 1824 | WP_000237143.1 | SAG1250 family conjugative relaxase | - |
| EQH41_RS04945 (EQH41_05275) | 994214..995080 | + | 867 | WP_000537005.1 | helix-turn-helix transcriptional regulator | - |
| EQH41_RS04950 (EQH41_05280) | 995671..995922 | + | 252 | WP_000098314.1 | hypothetical protein | - |
| EQH41_RS04955 (EQH41_05285) | 996151..996453 | + | 303 | WP_000792536.1 | hypothetical protein | - |
| EQH41_RS04960 (EQH41_05290) | 996450..997796 | + | 1347 | WP_001105427.1 | protein kinase | - |
| EQH41_RS04965 (EQH41_05295) | 997828..998727 | + | 900 | WP_001808562.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| EQH41_RS04970 (EQH41_05300) | 998724..999524 | + | 801 | WP_000642567.1 | ABC transporter permease | - |
| EQH41_RS04975 (EQH41_05305) | 999682..1000155 | + | 474 | WP_001206386.1 | IS200-IS605 family transposase ISSpn6 | Transposase |
| EQH41_RS04980 (EQH41_05310) | 1000412..1000633 | + | 222 | WP_000286244.1 | helix-turn-helix transcriptional regulator | - |
| EQH41_RS04985 (EQH41_05320) | 1001080..1001382 | + | 303 | Protein_993 | IS5 family transposase IS1381A | Transposase |
| EQH41_RS04990 (EQH41_05325) | 1001538..1002767 | + | 1230 | WP_000703352.1 | FtsW/RodA/SpoVE family cell cycle protein | - |
| EQH41_RS04995 (EQH41_05330) | 1002787..1005483 | + | 2697 | WP_000058203.1 | phosphoenolpyruvate carboxylase | - |
| EQH41_RS05000 (EQH41_05335) | 1005896..1006900 | + | 1005 | WP_000792163.1 | hypothetical protein | VF |
| EQH41_RS05005 (EQH41_05340) | 1006969..1007835 | + | 867 | WP_000637238.1 | ABC transporter permease | - |
| EQH41_RS05010 (EQH41_05345) | 1007832..1008590 | + | 759 | WP_000125408.1 | ABC transporter ATP-binding protein | - |
| EQH41_RS05015 (EQH41_05350) | 1008680..1010440 | + | 1761 | WP_000227862.1 | DNA primase | - |
| EQH41_RS05020 (EQH41_05355) | 1010443..1011552 | + | 1110 | WP_000201898.1 | RNA polymerase sigma factor RpoD | - |
| EQH41_RS05025 (EQH41_05360) | 1011566..1011895 | + | 330 | WP_000331928.1 | metal-sulfur cluster assembly factor | - |
| EQH41_RS05030 (EQH41_05365) | 1012010..1013053 | + | 1044 | WP_000412280.1 | alpha-galactosylglucosyldiacylglycerol synthase | - |
| EQH41_RS05035 (EQH41_05370) | 1013069..1014394 | + | 1326 | WP_001219427.1 | glycosyltransferase family 4 protein | - |
| EQH41_RS05040 (EQH41_05375) | 1014425..1014601 | + | 177 | WP_001256250.1 | PspC domain-containing protein | - |
| EQH41_RS05045 (EQH41_05380) | 1014660..1014794 | + | 135 | WP_000863859.1 | DUF4044 domain-containing protein | - |
| EQH41_RS05050 (EQH41_05385) | 1014858..1016168 | + | 1311 | WP_000061641.1 | GTPase ObgE | - |
| EQH41_RS05055 (EQH41_05390) | 1016178..1016336 | + | 159 | WP_001808548.1 | hypothetical protein | - |
| EQH41_RS10905 | 1017211..1017336 | - | 126 | WP_001818214.1 | hypothetical protein | - |
| EQH41_RS05060 (EQH41_05395) | 1017479..1018738 | + | 1260 | WP_001227083.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| EQH41_RS05065 (EQH41_05400) | 1018754..1019305 | + | 552 | WP_001028732.1 | GNAT family N-acetyltransferase | - |
| EQH41_RS05070 (EQH41_05405) | 1019298..1020575 | + | 1278 | WP_000033830.1 | CBS-HotDog domain-containing transcription factor SpxR | - |
| EQH41_RS05075 (EQH41_05410) | 1020591..1021451 | + | 861 | WP_000631543.1 | methionyl aminopeptidase | - |
| EQH41_RS05080 (EQH41_05420) | 1021831..1022634 | + | 804 | Protein_1013 | IS5 family transposase | - |
| EQH41_RS05085 (EQH41_05425) | 1022825..1025116 | + | 2292 | WP_000992862.1 | DNA helicase PcrA | - |
| EQH41_RS05090 (EQH41_05430) | 1025159..1025839 | + | 681 | WP_000286922.1 | DNA repair protein RadC | - |
| EQH41_RS05095 (EQH41_05435) | 1025836..1026525 | - | 690 | WP_000743330.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
| EQH41_RS05100 (EQH41_05440) | 1026543..1027184 | - | 642 | WP_000653403.1 | redox-sensing transcriptional repressor Rex | - |
| EQH41_RS05105 (EQH41_05445) | 1027267..1027482 | - | 216 | WP_000462487.1 | DUF4649 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Streptococcus pneumoniae TIGR4 | Integrative and Conjugative Element | TA10019, TA20634 | NC_003028 | 968351..1022298 | 0 |