MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP034658 Location: 1378571..1400245 Organism: Escherichia coli strain ATCC 98082 Replicon: chromosome
Accession: NZ_CP034658 Location: 1378571..1400245 Organism: Escherichia coli strain ATCC 98082 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKH78_RS24610 (1374560) | 1374560..1374607 | + | 48 | WP_211180494.1 | protein YnaN | - |
| EKH78_RS06680 (1374621) | 1374621..1375604 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| EKH78_RS24895 (1375879) | 1375879..1376052 | + | 174 | WP_001296046.1 | protein YnaL | - |
| EKH78_RS06685 (1376082) | 1376082..1377455 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| EKH78_RS06690 (1377584) | 1377584..1378519 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| EKH78_RS06695 (1378571) | 1378571..1379806 | - | 1236 | WP_000040852.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| EKH78_RS06700 (1379808) | 1379808..1380023 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1380127) | 1380127..1380305 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1380127) | 1380127..1380305 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1380127) | 1380127..1380305 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1380127) | 1380127..1380305 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| EKH78_RS06705 (1380102) | 1380102..1380311 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| EKH78_RS06710 (1380304) | 1380304..1380498 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| EKH78_RS06715 (1380555) | 1380555..1381364 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| EKH78_RS06720 (1381357) | 1381357..1383957 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| EKH78_RS06725 (1384059) | 1384059..1384334 | - | 276 | WP_000632297.1 | protein RacC | - |
| EKH78_RS06730 (1384409) | 1384409..1384579 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| EKH78_RS06735 (1384579) | 1384579..1384800 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| EKH78_RS06740 (1385242) | 1385242..1385730 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| EKH78_RS06745 (1385727) | 1385727..1385882 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| EKH78_RS24900 (1385893) | 1385893..1386027 | - | 135 | WP_000233809.1 | phage protein | - |
| EKH78_RS06750 (1386336) | 1386336..1386812 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| EKH78_RS06755 (1386936) | 1386936..1387232 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| EKH78_RS06760 (1387255) | 1387255..1387677 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| EKH78_RS06765 (1387690) | 1387690..1388547 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| EKH78_RS06770 (1388554) | 1388554..1389300 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| EKH78_RS06775 (1389323) | 1389323..1389775 | + | 453 | Protein_1338 | DUF1627 domain-containing protein | - |
| EKH78_RS06780 (1389971) | 1389971..1390156 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| EKH78_RS06785 (1390353) | 1390353..1391810 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| EKH78_RS06790 (1391948) | 1391948..1392211 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| EKH78_RS06795 (1392192) | 1392192..1392551 | + | 360 | WP_000091628.1 | protein YdaY | - |
| EKH78_RS06800 (1393025) | 1393025..1393957 | + | 933 | Protein_1343 | phage tail length tape measure family protein | - |
| EKH78_RS06805 (1393960) | 1393960..1394175 | + | 216 | Protein_1344 | Ail/Lom family outer membrane beta-barrel protein | - |
| EKH78_RS06810 (1394317) | 1394317..1395297 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| EKH78_RS06815 (1395367) | 1395367..1395555 | + | 189 | Protein_1346 | Ail/Lom family outer membrane beta-barrel protein | - |
| EKH78_RS06820 (1395620) | 1395620..1398982 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| EKH78_RS06825 (1398982) | 1398982..1399557 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| EKH78_RS06830 (1399655) | 1399655..1400245 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| EKH78_RS06835 (1400562) | 1400562..1400795 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| EKH78_RS06840 (1400864) | 1400864..1400977 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| EKH78_RS06845 (1401317) | 1401317..1401490 | + | 174 | WP_001157926.1 | hypothetical protein | - |
| EKH78_RS06850 (1401756) | 1401756..1402190 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| EKH78_RS06855 (1402331) | 1402331..1403464 | - | 1134 | WP_000837910.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |