MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 124532 bp
Accession: NZ_CP032388 Location: 1..124532 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 Replicon: plasmid pN45955_1
Accession: NZ_CP032388 Location: 1..124532 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 Replicon: plasmid pN45955_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5F98_RS26100 () | 233..514 | + | 282 | WP_000044823.1 | hypothetical protein | - |
| D5F98_RS24780 () | 489..1163 | + | 675 | WP_000344149.1 | hypothetical protein | - |
| D5F98_RS24785 () | 1231..1662 | + | 432 | WP_001326170.1 | hypothetical protein | - |
| D5F98_RS24790 () | 1668..1979 | + | 312 | WP_001447539.1 | hypothetical protein | - |
| D5F98_RS24795 () | 1988..2488 | + | 501 | WP_000647188.1 | hypothetical protein | - |
| D5F98_RS24800 () | 2492..3919 | + | 1428 | WP_000936897.1 | DNA cytosine methyltransferase | - |
| D5F98_RS24805 () | 3919..4575 | + | 657 | WP_000268552.1 | hypothetical protein | - |
| D5F98_RS24810 () | 4631..5248 | + | 618 | WP_000464630.1 | hypothetical protein | - |
| D5F98_RS24820 () | 5460..5759 | + | 300 | WP_001326171.1 | hypothetical protein | - |
| D5F98_RS24825 () | 5850..6338 | - | 489 | WP_000467110.1 | hypothetical protein | - |
| D5F98_RS24830 () | 6353..8545 | - | 2193 | WP_000366823.1 | DNA topoisomerase 3 | - |
| D5F98_RS24835 () | 8545..8778 | - | 234 | WP_001191890.1 | hypothetical protein | - |
| D5F98_RS24840 () | 8760..9377 | - | 618 | WP_001249395.1 | hypothetical protein | - |
| D5F98_RS24845 () | 9545..12517 | + | 2973 | WP_001326173.1 | TraI domain-containing protein | - |
| D5F98_RS24850 () | 12514..14379 | + | 1866 | WP_077779971.1 | conjugative transfer system coupling protein TraD | - |
| D5F98_RS24855 () | 14390..14974 | + | 585 | WP_000332868.1 | hypothetical protein | - |
| D5F98_RS24860 () | 14931..15560 | + | 630 | WP_000743449.1 | DUF4400 domain-containing protein | - |
| D5F98_RS24865 () | 15570..16016 | + | 447 | WP_000122507.1 | hypothetical protein | - |
| D5F98_RS24870 () | 16026..16403 | + | 378 | WP_000869297.1 | hypothetical protein | - |
| D5F98_RS24875 () | 16403..17065 | + | 663 | WP_001231464.1 | hypothetical protein | - |
| D5F98_RS24880 () | 17389..17766 | + | 378 | WP_001326174.1 | hypothetical protein | - |
| D5F98_RS24885 () | 17911..18192 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| D5F98_RS24890 () | 18189..18815 | + | 627 | WP_001049717.1 | hypothetical protein | - |
| D5F98_RS24895 () | 18799..19716 | + | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| D5F98_RS24900 () | 19716..21029 | + | 1314 | WP_024131605.1 | conjugal transfer protein TraB | - |
| D5F98_RS24905 () | 21026..21604 | + | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| D5F98_RS24910 () | 21608..22000 | + | 393 | WP_000479535.1 | hypothetical protein | - |
| D5F98_RS24915 () | 22285..23547 | + | 1263 | WP_000608644.1 | IS1380-like element ISEc9 family transposase | - |
| D5F98_RS24920 () | 23871..25016 | + | 1146 | WP_000976514.1 | class C beta-lactamase CMY-2 | - |
| D5F98_RS24925 () | 25110..25580 | + | 471 | Protein_30 | lipocalin family protein | - |
| D5F98_RS24930 () | 25637..26341 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| D5F98_RS24940 () | 26436..26921 | + | 486 | WP_001281416.1 | Abi family protein | - |
| D5F98_RS24945 () | 27080..28207 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| D5F98_RS24950 () | 29285..29929 | - | 645 | WP_000203397.1 | recombinase family protein | - |
| D5F98_RS24955 () | 30003..34259 | + | 4257 | Protein_35 | conjugative transfer relaxase/helicase TraI | - |
| D5F98_RS24960 () | 34279..35019 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| D5F98_RS24965 () | 35074..35637 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| D5F98_RS24970 () | 35754..36206 | + | 453 | WP_000477656.1 | hypothetical protein | - |
| D5F98_RS24975 () | 36372..36815 | + | 444 | Protein_39 | phospholipase | - |
| D5F98_RS24980 () | 36994..37260 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| D5F98_RS24990 () | 37508..37585 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| D5F98_RS24995 () | 37566..38447 | + | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
| D5F98_RS25005 () | 39242..39636 | - | 395 | Protein_43 | transposase | - |
| D5F98_RS25010 () | 39666..39839 | - | 174 | WP_001675604.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| D5F98_RS26005 () | 39994..40191 | - | 198 | WP_001675602.1 | transposase | - |
| D5F98_RS25020 () | 40486..41280 | - | 795 | WP_001575508.1 | hypothetical protein | - |
| D5F98_RS25025 () | 41316..41975 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| D5F98_RS25030 () | 43434..43706 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| D5F98_RS25035 () | 43942..44739 | + | 798 | WP_000704721.1 | F4 (K88) fimbria minor subunit FaeH | - |
| D5F98_RS25040 () | 44767..45531 | + | 765 | WP_000827659.1 | K88 minor fimbrial subunit faeI | - |
| D5F98_RS25045 () | 45518..45793 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| D5F98_RS25050 () | 45793..46506 | + | 714 | WP_000801115.1 | hypothetical protein | - |
| D5F98_RS25060 () | 46631..47215 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| D5F98_RS25065 () | 47288..47500 | + | 213 | WP_000063794.1 | hypothetical protein | - |
| D5F98_RS26010 () | 47761..47922 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| D5F98_RS25070 () | 47948..48796 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| D5F98_RS25085 () | 49366..49794 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| D5F98_RS25090 () | 49791..50021 | - | 231 | WP_001261283.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| D5F98_RS25095 () | 50766..50984 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| D5F98_RS25100 () | 50986..51291 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| D5F98_RS25105 () | 51293..51583 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| D5F98_RS25110 () | 51580..52101 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| D5F98_RS25115 () | 52136..52918 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| D5F98_RS25120 () | 52927..53639 | + | 713 | Protein_64 | EAL domain-containing protein | - |
| D5F98_RS25125 () | 53643..54152 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| D5F98_RS25130 () | 54146..54482 | + | 337 | Protein_66 | hypothetical protein | - |
| D5F98_RS25135 () | 54694..55254 | + | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| D5F98_RS25140 () | 55321..55680 | - | 360 | WP_001675600.1 | helix-turn-helix domain-containing protein | - |
| D5F98_RS25145 () | 55737..56162 | + | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| D5F98_RS25150 () | 56289..56939 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| D5F98_RS25155 () | 57200..57925 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| D5F98_RS25160 () | 58206..59987 | - | 1782 | WP_001675599.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| D5F98_RS26015 () | 60039..60206 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| D5F98_RS25165 () | 60169..60936 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| D5F98_RS25170 () | 61110..61274 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| D5F98_RS25175 () | 61448..62341 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| D5F98_RS25180 () | 62948..63427 | + | 480 | Protein_77 | helix-turn-helix domain-containing protein | - |
| D5F98_RS25185 () | 63491..64195 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| D5F98_RS25195 () | 64247..64909 | + | 663 | Protein_79 | IS481 family transposase | - |
| D5F98_RS25200 () | 64842..65867 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| D5F98_RS25205 () | 66056..66658 | - | 603 | Protein_81 | IS630 family transposase | - |
| D5F98_RS25215 () | 66674..67378 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| D5F98_RS25220 () | 67531..68346 | + | 816 | WP_000018329.1 | aminoglycoside O-phosphotransferase APH(3')-Ia | - |
| D5F98_RS25225 () | 68536..69240 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| D5F98_RS25235 () | 69532..70068 | + | 537 | WP_000949433.1 | hypothetical protein | - |
| D5F98_RS25240 () | 70071..71081 | + | 1011 | WP_000543934.1 | tyrosine-type recombinase/integrase | - |
| D5F98_RS25245 () | 71086..71955 | + | 870 | WP_012728230.1 | 3'-5' exonuclease | - |
| D5F98_RS25250 () | 71952..72443 | + | 492 | WP_000139717.1 | hypothetical protein | - |
| D5F98_RS25255 () | 72770..73645 | + | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| D5F98_RS25260 () | 73799..74839 | + | 1041 | WP_000101568.1 | DNA-binding protein | - |
| D5F98_RS25270 () | 75126..76637 | + | 1512 | WP_000811656.1 | UvrD-helicase domain-containing protein | - |
| D5F98_RS25275 () | 76748..77788 | + | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| D5F98_RS25280 () | 77790..79223 | + | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| D5F98_RS25285 () | 79236..82850 | + | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| D5F98_RS25290 () | 82888..83250 | - | 363 | WP_000683483.1 | hypothetical protein | - |
| D5F98_RS25295 () | 83966..84238 | + | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| D5F98_RS25300 () | 84238..84771 | + | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| D5F98_RS25305 () | 84782..85390 | + | 609 | WP_000891157.1 | hypothetical protein | - |
| D5F98_RS25310 () | 85387..85938 | + | 552 | WP_001020646.1 | hypothetical protein | - |
| D5F98_RS25315 () | 85998..86417 | - | 420 | WP_000651490.1 | H-NS histone family protein | - |
| D5F98_RS25320 () | 86419..86712 | - | 294 | WP_000919078.1 | hypothetical protein | - |
| D5F98_RS25325 () | 86729..87712 | - | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| D5F98_RS25330 () | 88211..88750 | + | 540 | WP_001447712.1 | hypothetical protein | - |
| D5F98_RS25335 () | 88755..89042 | + | 288 | WP_000127321.1 | hypothetical protein | - |
| D5F98_RS25340 () | 89027..90127 | + | 1101 | WP_000350011.1 | plasmid replication protein | - |
| D5F98_RS25355 () | 91164..91598 | - | 435 | WP_000883925.1 | hypothetical protein | - |
| D5F98_RS25360 () | 91616..92731 | - | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| D5F98_RS25365 () | 93000..93608 | + | 609 | WP_000849071.1 | hypothetical protein | - |
| D5F98_RS25370 () | 93613..94134 | + | 522 | WP_000393785.1 | hypothetical protein | - |
| D5F98_RS25375 () | 94137..94658 | + | 522 | WP_000805800.1 | hypothetical protein | - |
| D5F98_RS25380 () | 94755..95228 | + | 474 | WP_000057877.1 | hypothetical protein | - |
| D5F98_RS25385 () | 95239..95532 | + | 294 | WP_001370730.1 | hypothetical protein | - |
| D5F98_RS25390 () | 95537..96391 | + | 855 | WP_000539392.1 | hypothetical protein | - |
| D5F98_RS25395 () | 96391..97350 | + | 960 | WP_000829616.1 | S49 family peptidase | - |
| D5F98_RS25400 () | 97366..98226 | + | 861 | WP_000139698.1 | DsbA family protein | - |
| D5F98_RS25405 () | 98260..98688 | + | 429 | WP_000591074.1 | hypothetical protein | - |
| D5F98_RS25410 () | 98745..99104 | + | 360 | WP_000422768.1 | hypothetical protein | - |
| D5F98_RS25415 () | 99104..99550 | + | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| D5F98_RS25420 () | 99547..100065 | + | 519 | WP_000210756.1 | nitrite reductase | - |
| D5F98_RS25425 () | 100065..100295 | + | 231 | WP_000972663.1 | hypothetical protein | - |
| D5F98_RS25430 () | 100282..101139 | + | 858 | WP_001167032.1 | hypothetical protein | - |
| D5F98_RS25440 () | 101370..101897 | + | 528 | WP_001236377.1 | thermonuclease family protein | - |
| D5F98_RS25445 () | 101955..102227 | + | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| D5F98_RS25450 () | 102315..102608 | + | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| D5F98_RS25455 () | 102635..102937 | - | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| D5F98_RS25460 () | 102942..103292 | - | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D5F98_RS25465 () | 103455..104003 | + | 549 | WP_001061574.1 | transcriptional regulator | - |
| D5F98_RS25475 () | 104344..104538 | + | 195 | WP_000343597.1 | hypothetical protein | - |
| D5F98_RS25480 () | 104549..104920 | + | 372 | WP_000516916.1 | hypothetical protein | - |
| D5F98_RS25485 () | 104913..105383 | + | 471 | WP_001281821.1 | hypothetical protein | - |
| D5F98_RS25490 () | 105398..105733 | - | 336 | WP_000683476.1 | hypothetical protein | - |
| D5F98_RS25495 () | 105830..106318 | + | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| D5F98_RS25500 () | 106321..106818 | + | 498 | WP_000062185.1 | hypothetical protein | - |
| D5F98_RS25505 () | 107033..107737 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| D5F98_RS25510 () | 107802..107981 | - | 180 | Protein_135 | helix-turn-helix transcriptional regulator | - |
| D5F98_RS25515 () | 108288..108992 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| D5F98_RS25525 () | 109404..110141 | + | 738 | WP_001366550.1 | recombinase family protein | - |
| D5F98_RS25530 () | 110138..110362 | + | 225 | WP_000743213.1 | hypothetical protein | - |
| D5F98_RS25535 () | 110573..112066 | + | 1494 | WP_001120888.1 | IS91-like element ISVsa3 family transposase | - |
| D5F98_RS26105 () | 112535..112981 | + | 447 | Protein_140 | DUF3363 domain-containing protein | - |
| D5F98_RS25545 () | 113198..114412 | + | 1215 | WP_012728216.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| D5F98_RS25550 () | 114440..114745 | + | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| D5F98_RS25555 () | 114857..115045 | + | 189 | Protein_143 | IS91 family transposase | - |
| D5F98_RS25560 () | 115012..116211 | - | 1200 | WP_000804063.1 | tetracycline efflux MFS transporter Tet(A) | - |
| D5F98_RS25565 () | 116317..116967 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| D5F98_RS25570 () | 116999..117241 | - | 243 | WP_000844627.1 | transposase | - |
| D5F98_RS25580 () | 117547..118383 | - | 837 | WP_000480968.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
| D5F98_RS25585 () | 118383..119186 | - | 804 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
| D5F98_RS25590 () | 119247..120062 | - | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| D5F98_RS25600 () | 120369..120680 | + | 312 | WP_000338945.1 | hypothetical protein | - |
| D5F98_RS25605 () | 120854..121639 | + | 786 | WP_001151304.1 | ParA family protein | - |
| D5F98_RS25610 () | 121643..122824 | + | 1182 | WP_001207227.1 | ParB/RepB/Spo0J family partition protein | - |
| D5F98_RS25615 () | 122873..123145 | + | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| D5F98_RS25620 () | 123198..123833 | - | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| D5F98_RS26045 () | 123925..124068 | - | 144 | WP_000939033.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|