MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 75390 bp
Accession: NZ_CP032386 Location: 1..75390 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 Replicon: plasmid pN53043_2
Accession: NZ_CP032386 Location: 1..75390 Organism: Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 Replicon: plasmid pN53043_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5F97_RS25635 () | 341..735 | - | 395 | Protein_0 | transposase | - |
| D5F97_RS25640 () | 765..938 | - | 174 | WP_001675604.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| D5F97_RS26320 () | 1093..1290 | - | 198 | WP_001675602.1 | transposase | - |
| D5F97_RS25650 () | 1585..2379 | - | 795 | WP_001575508.1 | hypothetical protein | - |
| D5F97_RS25655 () | 2415..3074 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| D5F97_RS25660 () | 4533..4805 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| D5F97_RS25665 () | 5041..5838 | + | 798 | WP_000704721.1 | F4 (K88) fimbria minor subunit FaeH | - |
| D5F97_RS25670 () | 5866..6630 | + | 765 | WP_000827659.1 | K88 minor fimbrial subunit faeI | - |
| D5F97_RS25675 () | 6617..6892 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| D5F97_RS25680 () | 6892..7605 | + | 714 | WP_000801115.1 | hypothetical protein | - |
| D5F97_RS25690 () | 7730..8314 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| D5F97_RS25695 () | 8387..8599 | + | 213 | WP_000063794.1 | hypothetical protein | - |
| D5F97_RS26325 () | 8860..9021 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| D5F97_RS25700 () | 9047..9895 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| D5F97_RS25715 () | 10465..10893 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| D5F97_RS25720 () | 10890..11120 | - | 231 | WP_001261283.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| D5F97_RS25725 () | 11865..12083 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| D5F97_RS25730 () | 12085..12390 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| D5F97_RS25735 () | 12392..12682 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| D5F97_RS25740 () | 12679..13200 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| D5F97_RS25745 () | 13235..14017 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| D5F97_RS25750 () | 14026..14738 | + | 713 | Protein_21 | EAL domain-containing protein | - |
| D5F97_RS25755 () | 14742..15251 | + | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| D5F97_RS25760 () | 15245..15581 | + | 337 | Protein_23 | hypothetical protein | - |
| D5F97_RS25765 () | 15793..16353 | + | 561 | WP_119743387.1 | inverse autotransporter beta domain-containing protein | - |
| D5F97_RS25770 () | 16420..16779 | - | 360 | WP_001675600.1 | helix-turn-helix domain-containing protein | - |
| D5F97_RS25775 () | 16836..17261 | + | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| D5F97_RS25780 () | 17388..18038 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| D5F97_RS25785 () | 18299..19024 | - | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| D5F97_RS25790 () | 19305..21086 | - | 1782 | WP_001675599.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| D5F97_RS26330 () | 21138..21305 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| D5F97_RS25795 () | 21268..22035 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| D5F97_RS25800 () | 22209..22373 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| D5F97_RS25805 () | 22547..23440 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| D5F97_RS25810 () | 24047..25084 | + | 1038 | WP_001121398.1 | IS630 family transposase | - |
| D5F97_RS25815 () | 25273..26298 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| D5F97_RS25820 () | 26231..27895 | - | 1665 | WP_000098783.1 | IS481 family transposase | - |
| D5F97_RS25825 () | 27879..28439 | - | 561 | WP_001240330.1 | recombinase family protein | - |
| D5F97_RS25830 () | 28504..29208 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| D5F97_RS25835 () | 29474..30214 | - | 741 | WP_001541566.1 | carbonic anhydrase | - |
| D5F97_RS25845 () | 30869..31357 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| D5F97_RS25850 () | 31616..32731 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| D5F97_RS25855 () | 32817..33233 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| D5F97_RS25860 () | 33417..33752 | + | 336 | WP_001527010.1 | hypothetical protein | - |
| D5F97_RS25865 () | 33809..34375 | + | 567 | WP_001541562.1 | DUF2913 family protein | - |
| D5F97_RS25870 () | 34407..35349 | - | 943 | Protein_45 | Rpn family recombination-promoting nuclease/putative transposase | - |
| D5F97_RS25875 () | 35742..36362 | + | 621 | WP_000864788.1 | ParA family protein | - |
| D5F97_RS25880 () | 36414..36644 | + | 231 | WP_000051066.1 | partitioning protein | - |
| D5F97_RS25895 () | 37283..37705 | - | 423 | WP_000202949.1 | hypothetical protein | - |
| D5F97_RS25900 () | 37773..38219 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| D5F97_RS25905 () | 38259..39095 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| D5F97_RS25915 () | 40331..40582 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| D5F97_RS25920 () | 40572..40853 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| D5F97_RS25925 () | 40999..41322 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| D5F97_RS25930 () | 41367..41612 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| D5F97_RS25935 () | 41602..41817 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| D5F97_RS25940 () | 41910..42239 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| D5F97_RS25945 () | 42282..42461 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| D5F97_RS25950 () | 42483..42680 | + | 198 | WP_001675595.1 | hypothetical protein | - |
| D5F97_RS25955 () | 42693..42965 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| D5F97_RS26410 () | 43222..43296 | + | 75 | Protein_60 | DNA distortion polypeptide 3 | - |
| D5F97_RS25965 () | 43291..43836 | + | 546 | WP_000757691.1 | hypothetical protein | - |
| D5F97_RS25970 () | 43839..45020 | + | 1182 | WP_000539536.1 | relaxase/mobilization nuclease domain-containing protein | - |
| D5F97_RS25975 () | 45366..45884 | + | 519 | WP_001675951.1 | ActX protein | - |
| D5F97_RS25980 () | 45814..46026 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| D5F97_RS25985 () | 46059..46706 | + | 648 | WP_000953526.1 | lytic transglycosylase domain-containing protein | - |
| D5F97_RS25990 () | 46684..46980 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| D5F97_RS25995 () | 46999..49752 | + | 2754 | WP_001675613.1 | VirB3 family type IV secretion system protein | - |
| D5F97_RS26000 () | 49763..50521 | + | 759 | WP_000744198.1 | pilus assembly protein | - |
| D5F97_RS26005 () | 50522..50749 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| D5F97_RS26010 () | 50759..51892 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| D5F97_RS26015 () | 52137..52850 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| D5F97_RS26020 () | 52855..53784 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| D5F97_RS26025 () | 53781..54986 | + | 1206 | WP_000139139.1 | TrbI/VirB10 family protein | - |
| D5F97_RS26030 () | 54988..56018 | + | 1031 | Protein_74 | P-type DNA transfer ATPase VirB11 | - |
| D5F97_RS26035 () | 56021..57856 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| D5F97_RS26040 () | 57853..58266 | + | 414 | WP_001575522.1 | hypothetical protein | - |
| D5F97_RS26045 () | 58263..58565 | + | 303 | WP_015059377.1 | KikA protein | - |
| D5F97_RS26335 () | 58726..58872 | + | 147 | WP_000382583.1 | hypothetical protein | - |
| D5F97_RS26050 () | 58876..59451 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| D5F97_RS26055 () | 59456..61609 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| D5F97_RS26060 () | 61606..61812 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| D5F97_RS26065 () | 61828..62262 | + | 435 | WP_001293135.1 | H-NS histone family protein | - |
| D5F97_RS26070 () | 62925..63410 | + | 486 | WP_001281416.1 | Abi family protein | - |
| D5F97_RS26075 () | 63569..64696 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| D5F97_RS26080 () | 65774..66418 | - | 645 | WP_000203397.1 | recombinase family protein | - |
| D5F97_RS26085 () | 66492..70748 | + | 4257 | Protein_86 | conjugative transfer relaxase/helicase TraI | - |
| D5F97_RS26090 () | 70768..71508 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| D5F97_RS26095 () | 71563..72126 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| D5F97_RS26100 () | 72243..72695 | + | 453 | WP_000477656.1 | hypothetical protein | - |
| D5F97_RS26105 () | 72861..73304 | + | 444 | Protein_90 | phospholipase | - |
| D5F97_RS26110 () | 73483..73749 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| D5F97_RS26120 () | 73997..74074 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| D5F97_RS26125 () | 74055..74936 | + | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|