MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74562 bp
Accession: NZ_CP032381 Location: 1..74562 Organism: Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 Replicon: plasmid pSDU2-USMARC-69807
Accession: NZ_CP032381 Location: 1..74562 Organism: Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 Replicon: plasmid pSDU2-USMARC-69807
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DZA54_RS25430 () | 1129..1356 | - | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| DZA54_RS25435 () | 1357..2115 | - | 759 | WP_000744198.1 | pilus assembly protein | - |
| DZA54_RS25440 () | 2126..4879 | - | 2754 | WP_001675613.1 | VirB3 family type IV secretion system protein | - |
| DZA54_RS25445 () | 4898..5194 | - | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| DZA54_RS25450 () | 5172..5819 | - | 648 | WP_000953526.1 | lytic transglycosylase domain-containing protein | - |
| DZA54_RS25455 () | 5852..6064 | - | 213 | WP_000125172.1 | hypothetical protein | - |
| DZA54_RS25460 () | 5994..6512 | - | 519 | WP_001675951.1 | ActX protein | - |
| DZA54_RS25465 () | 6858..8039 | - | 1182 | WP_000539536.1 | relaxase/mobilization nuclease domain-containing protein | - |
| DZA54_RS25470 () | 8042..8587 | - | 546 | WP_000757691.1 | hypothetical protein | - |
| DZA54_RS25480 () | 8913..9185 | - | 273 | WP_000160399.1 | hypothetical protein | - |
| DZA54_RS25485 () | 9198..9347 | - | 150 | WP_000003880.1 | hypothetical protein | - |
| DZA54_RS25490 () | 9417..9596 | - | 180 | WP_001575529.1 | hypothetical protein | - |
| DZA54_RS25495 () | 9639..9968 | - | 330 | WP_000866650.1 | hypothetical protein | - |
| DZA54_RS25500 () | 10061..10276 | - | 216 | WP_001180117.1 | hypothetical protein | - |
| DZA54_RS25505 () | 10266..10511 | - | 246 | WP_000356542.1 | hypothetical protein | - |
| DZA54_RS25510 () | 10556..10879 | - | 324 | WP_001181909.1 | hypothetical protein | - |
| DZA54_RS25515 () | 11025..11306 | - | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DZA54_RS25520 () | 11296..11547 | - | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| DZA54_RS25530 () | 12783..13619 | + | 837 | WP_001575533.1 | replication initiation protein | - |
| DZA54_RS25535 () | 13659..14105 | + | 447 | WP_001074381.1 | hypothetical protein | - |
| DZA54_RS25540 () | 14242..14595 | + | 354 | WP_001675596.1 | hypothetical protein | - |
| DZA54_RS25555 () | 15234..15464 | - | 231 | WP_000051066.1 | partitioning protein | - |
| DZA54_RS25560 () | 15516..16136 | - | 621 | WP_000864788.1 | ParA family protein | - |
| DZA54_RS25565 () | 16529..17471 | + | 943 | Protein_24 | Rpn family recombination-promoting nuclease/putative transposase | - |
| DZA54_RS25570 () | 17503..18069 | - | 567 | WP_001541562.1 | DUF2913 family protein | - |
| DZA54_RS25575 () | 18126..18461 | - | 336 | WP_001527010.1 | hypothetical protein | - |
| DZA54_RS25580 () | 18645..19061 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| DZA54_RS25585 () | 19147..20262 | - | 1116 | WP_001247118.1 | DNA-binding protein | - |
| DZA54_RS25590 () | 20521..21009 | + | 489 | WP_001135407.1 | hypothetical protein | - |
| DZA54_RS25600 () | 21664..22404 | + | 741 | WP_001541566.1 | carbonic anhydrase | - |
| DZA54_RS25605 () | 22611..23171 | + | 561 | WP_001240330.1 | recombinase family protein | - |
| DZA54_RS25610 () | 23155..24819 | + | 1665 | WP_000098783.1 | IS481 family transposase | - |
| DZA54_RS25615 () | 24752..25777 | + | 1026 | WP_001576625.1 | ExeA family protein | - |
| DZA54_RS25620 () | 25966..27003 | - | 1038 | WP_001121398.1 | IS630 family transposase | - |
| DZA54_RS25625 () | 27610..28503 | + | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| DZA54_RS25630 () | 28677..28841 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| DZA54_RS25635 () | 29015..29782 | + | 768 | WP_001575487.1 | virulence protein SpvA | - |
| DZA54_RS26105 () | 29745..29912 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| DZA54_RS25640 () | 29964..31745 | + | 1782 | WP_001675599.1 | SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB | - |
| DZA54_RS25645 () | 32026..32751 | + | 726 | WP_001122242.1 | type III secretion system effector phosphothreonine lyase SpvC | - |
| DZA54_RS25650 () | 33012..33662 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| DZA54_RS25655 () | 33789..34214 | - | 426 | WP_000064919.1 | IS200/IS605 family transposase | - |
| DZA54_RS25660 () | 34271..34630 | + | 360 | WP_001675600.1 | helix-turn-helix domain-containing protein | - |
| DZA54_RS25665 () | 34697..35257 | - | 561 | WP_000900095.1 | inverse autotransporter beta domain-containing protein | - |
| DZA54_RS25670 () | 35469..35805 | - | 337 | Protein_45 | hypothetical protein | - |
| DZA54_RS25675 () | 35799..36308 | - | 510 | WP_001541544.1 | CaiF/GrlA family transcriptional regulator | - |
| DZA54_RS25680 () | 36312..37024 | - | 713 | Protein_47 | EAL domain-containing protein | - |
| DZA54_RS25685 () | 37033..37815 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| DZA54_RS25690 () | 37850..38371 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| DZA54_RS25695 () | 38368..38658 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| DZA54_RS25700 () | 38660..38965 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| DZA54_RS25705 () | 38967..39185 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| DZA54_RS25710 () | 39930..40160 | + | 231 | WP_001261283.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| DZA54_RS25715 () | 40157..40585 | + | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| DZA54_RS25730 () | 41155..42003 | - | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| DZA54_RS26110 () | 42029..42190 | - | 162 | WP_001816720.1 | hypothetical protein | - |
| DZA54_RS25735 () | 42451..42663 | - | 213 | WP_000063794.1 | hypothetical protein | - |
| DZA54_RS25740 () | 42736..43320 | - | 585 | WP_001575501.1 | hypothetical protein | - |
| DZA54_RS25750 () | 43445..44158 | - | 714 | WP_000801115.1 | hypothetical protein | - |
| DZA54_RS25755 () | 44158..44433 | - | 276 | WP_001020576.1 | hypothetical protein | - |
| DZA54_RS25760 () | 44420..45184 | - | 765 | WP_000827659.1 | K88 minor fimbrial subunit faeI | - |
| DZA54_RS25765 () | 45212..46009 | - | 798 | WP_000704721.1 | F4 (K88) fimbria minor subunit FaeH | - |
| DZA54_RS25770 () | 46245..46517 | - | 273 | WP_001178538.1 | hypothetical protein | - |
| DZA54_RS25775 () | 47976..48635 | + | 660 | WP_001575507.1 | hypothetical protein | - |
| DZA54_RS25780 () | 48671..49465 | + | 795 | WP_001575508.1 | hypothetical protein | - |
| DZA54_RS26115 () | 49760..49957 | + | 198 | WP_001675602.1 | transposase | - |
| DZA54_RS25790 () | 50112..50285 | + | 174 | WP_001675604.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| DZA54_RS25795 () | 50315..50709 | + | 395 | Protein_68 | IS66 family transposase | - |
| DZA54_RS25805 () | 51504..52385 | - | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
| DZA54_RS25810 () | 52366..52443 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| DZA54_RS25820 () | 52691..52957 | - | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| DZA54_RS25825 () | 53136..53579 | - | 444 | Protein_72 | phospholipase | - |
| DZA54_RS25830 () | 53745..54197 | - | 453 | WP_000477656.1 | hypothetical protein | - |
| DZA54_RS25835 () | 54314..54877 | - | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| DZA54_RS25840 () | 54932..55672 | - | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| DZA54_RS25845 () | 55692..59948 | - | 4257 | Protein_76 | conjugative transfer relaxase/helicase TraI | - |
| DZA54_RS25850 () | 60022..60666 | + | 645 | WP_000203397.1 | recombinase family protein | - |
| DZA54_RS25855 () | 61744..62871 | + | 1128 | WP_000156234.1 | hypothetical protein | - |
| DZA54_RS25860 () | 63030..63515 | - | 486 | WP_001281416.1 | Abi family protein | - |
| DZA54_RS25865 () | 64178..64612 | - | 435 | WP_001293135.1 | H-NS histone family protein | - |
| DZA54_RS25870 () | 64628..64834 | - | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| DZA54_RS25875 () | 64831..66984 | - | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| DZA54_RS25880 () | 66989..67564 | - | 576 | WP_001198970.1 | hypothetical protein | - |
| DZA54_RS26120 () | 67568..67714 | - | 147 | WP_000382583.1 | hypothetical protein | - |
| DZA54_RS25885 () | 67875..68177 | - | 303 | WP_015059377.1 | KikA protein | - |
| DZA54_RS25890 () | 68174..68587 | - | 414 | WP_001575522.1 | hypothetical protein | - |
| DZA54_RS25895 () | 68584..70419 | - | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| DZA54_RS25900 () | 70422..71452 | - | 1031 | Protein_88 | P-type DNA transfer ATPase VirB11 | - |
| DZA54_RS25905 () | 71454..72659 | - | 1206 | WP_000139139.1 | TrbI/VirB10 family protein | - |
| DZA54_RS25910 () | 72656..73585 | - | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| DZA54_RS25915 () | 73590..74303 | - | 714 | WP_000394613.1 | type IV secretion system protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|