MGE detailed information
MGE type: Conjugative plasmid MGE length: 128762 bp
Accession: NZ_CP030329 Location: 1..128762 Organism: Escherichia coli strain AR_452 Replicon: plasmid unnamed1
Accession: NZ_CP030329 Location: 1..128762 Organism: Escherichia coli strain AR_452 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC39_RS00005 () | 390..1925 | + | 1536 | WP_112021705.1 | fluoroquinolone efflux MFS transporter QepA9 | - |
| CSC39_RS00010 () | 1953..2321 | - | 369 | WP_024475255.1 | mechanosensitive ion channel | - |
| CSC39_RS00020 () | 2578..4110 | - | 1533 | WP_001747814.1 | IS91 family transposase | - |
| CSC39_RS25975 () | 4337..4690 | - | 354 | Protein_3 | chaperonin GroEL | - |
| CSC39_RS25980 () | 4691..4990 | - | 300 | Protein_4 | class 1 integron integrase IntI1 | - |
| CSC39_RS00030 () | 5135..5632 | + | 498 | WP_001083725.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | - |
| CSC39_RS00035 () | 5744..6034 | + | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| CSC39_RS00040 () | 6040..6831 | + | 792 | WP_001206356.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 | - |
| CSC39_RS00045 () | 6995..7342 | + | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| CSC39_RS00050 () | 7336..8175 | + | 840 | WP_000259031.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | - |
| CSC39_RS00055 () | 8580..10121 | + | 1542 | WP_000050481.1 | IS91 family transposase | - |
| CSC39_RS00065 () | 10434..11465 | + | 1032 | WP_004201169.1 | protein-disulfide reductase DsbD N-terminal domain-containing protein | - |
| CSC39_RS00070 () | 11476..12114 | - | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| CSC39_RS00075 () | 12119..12484 | - | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| CSC39_RS00080 () | 12488..13300 | - | 813 | WP_023408309.1 | subclass B1 metallo-beta-lactamase NDM-5 | - |
| CSC39_RS00085 () | 13401..13694 | - | 294 | Protein_15 | IS30 family transposase | - |
| CSC39_RS00090 () | 13859..14563 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| CSC39_RS00100 () | 14685..15590 | + | 906 | WP_000219391.1 | Mph(A) family macrolide 2'-phosphotransferase | - |
| CSC39_RS00105 () | 15587..16825 | + | 1239 | WP_000004159.1 | MFS transporter | - |
| CSC39_RS00110 () | 16825..17409 | + | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| CSC39_RS00125 () | 17902..18666 | - | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| CSC39_RS00135 () | 18968..19525 | + | 558 | WP_001235713.1 | recombinase family protein | - |
| CSC39_RS00140 () | 19708..20568 | + | 861 | WP_000027057.1 | class A broad-spectrum beta-lactamase TEM-1 | - |
| CSC39_RS00150 () | 21185..22517 | + | 1333 | Protein_23 | group II intron reverse transcriptase/maturase | - |
| CSC39_RS00160 () | 22773..23054 | + | 282 | Protein_24 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CSC39_RS00165 () | 23146..23669 | - | 524 | Protein_25 | IS1 family transposase | - |
| CSC39_RS00170 () | 24196..24645 | + | 450 | WP_029702172.1 | hypothetical protein | - |
| CSC39_RS00180 () | 24861..25558 | + | 698 | Protein_27 | IS1 family transposase | - |
| CSC39_RS00185 () | 25598..26338 | + | 741 | WP_029702141.1 | tyrosine-type recombinase/integrase | - |
| CSC39_RS00195 () | 26634..26902 | + | 269 | Protein_29 | type II toxin-antitoxin system ParD family antitoxin | - |
| CSC39_RS00200 () | 27018..27179 | + | 162 | WP_001440647.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CSC39_RS00205 () | 27246..27428 | + | 183 | WP_042004909.1 | hypothetical protein | - |
| CSC39_RS00210 () | 27549..28289 | + | 741 | WP_001586233.1 | tyrosine-type recombinase/integrase | - |
| CSC39_RS00215 () | 28612..29601 | - | 990 | WP_123002471.1 | RepB family plasmid replication initiator protein | - |
| CSC39_RS00220 () | 30489..30758 | + | 270 | WP_001275013.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| CSC39_RS00225 () | 30762..31292 | + | 531 | WP_000348883.1 | GNAT family N-acetyltransferase | Toxin Detail |
| CSC39_RS00230 () | 31293..31510 | + | 218 | Protein_36 | transposase | - |
| CSC39_RS00235 () | 31515..31790 | - | 276 | WP_001403920.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CSC39_RS00240 () | 31879..32109 | - | 231 | WP_001261274.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CSC39_RS00245 () | 32308..34929 | - | 2622 | WP_001586230.1 | hypothetical protein | - |
| CSC39_RS00250 () | 35320..35805 | + | 486 | WP_001403958.1 | hypothetical protein | - |
| CSC39_RS25700 () | 35834..36606 | + | 773 | Protein_41 | hypothetical protein | - |
| CSC39_RS00265 () | 36773..37906 | + | 1134 | WP_000545985.1 | DUF3800 domain-containing protein | - |
| CSC39_RS00270 () | 37940..38452 | - | 513 | WP_001586228.1 | hypothetical protein | - |
| CSC39_RS00275 () | 38739..40304 | + | 1566 | WP_001586226.1 | ATP-binding protein | - |
| CSC39_RS00280 () | 40361..41230 | - | 870 | WP_001586225.1 | hypothetical protein | - |
| CSC39_RS00285 () | 41232..42134 | - | 903 | WP_024187432.1 | hypothetical protein | - |
| CSC39_RS00290 () | 42135..42320 | - | 186 | WP_001586223.1 | hypothetical protein | - |
| CSC39_RS00295 () | 42613..43545 | - | 933 | WP_000991831.1 | hypothetical protein | - |
| CSC39_RS00300 () | 43549..44544 | - | 996 | WP_000246635.1 | hypothetical protein | - |
| CSC39_RS00305 () | 45222..45572 | + | 351 | WP_039052452.1 | hypothetical protein | - |
| CSC39_RS00310 () | 45642..46250 | + | 609 | WP_039052451.1 | hypothetical protein | - |
| CSC39_RS00315 () | 46357..46596 | + | 240 | WP_157916581.1 | resolvase | - |
| CSC39_RS00320 () | 46578..47078 | + | 501 | Protein_53 | tyrosine-type recombinase/integrase | - |
| CSC39_RS00325 () | 47216..47491 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| CSC39_RS00330 () | 47485..48129 | - | 645 | WP_000633913.1 | AAA family ATPase | - |
| CSC39_RS00335 () | 48358..49329 | + | 972 | WP_039052450.1 | plasmid segregation protein parM | - |
| CSC39_RS00340 () | 49334..49726 | + | 393 | WP_039052449.1 | plasmid partitioning/stability family protein | - |
| CSC39_RS00345 () | 49731..50821 | - | 1091 | Protein_58 | translesion error-prone DNA polymerase V subunit UmuC | - |
| CSC39_RS00355 () | 51235..52215 | - | 981 | WP_039052448.1 | IS5 family transposase | - |
| CSC39_RS00360 () | 52558..54822 | - | 2265 | WP_039052447.1 | UvrD-helicase domain-containing protein | - |
| CSC39_RS00365 () | 54824..55600 | - | 777 | WP_039052454.1 | hypothetical protein | - |
| CSC39_RS00380 () | 57725..58942 | + | 1218 | WP_061856962.1 | IS4-like element ISVsa5 family transposase | - |
| CSC39_RS00385 () | 58952..59323 | - | 372 | WP_035689358.1 | helix-turn-helix domain-containing protein | - |
| CSC39_RS00390 () | 59456..60049 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| CSC39_RS00395 () | 60162..61367 | - | 1206 | WP_001089068.1 | tetracycline efflux MFS transporter Tet(B) | - |
| CSC39_RS00400 () | 61449..62072 | + | 624 | WP_000088605.1 | tetracycline resistance transcriptional repressor TetR(B) | - |
| CSC39_RS00405 () | 62050..62736 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| CSC39_RS00410 () | 62744..63130 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| CSC39_RS00415 () | 63123..63443 | - | 321 | WP_000562370.1 | antibiotic biosynthesis monooxygenase | - |
| CSC39_RS00420 () | 63887..64120 | + | 234 | Protein_71 | sodium/glutamate symporter | - |
| CSC39_RS00425 () | 64141..64838 | - | 698 | Protein_72 | IS1 family transposase | - |
| CSC39_RS00435 () | 64952..65605 | - | 654 | WP_039052615.1 | hypothetical protein | - |
| CSC39_RS00440 () | 65643..65999 | - | 357 | WP_039052614.1 | hypothetical protein | - |
| CSC39_RS25985 () | 66176..66625 | + | 450 | Protein_75 | hypothetical protein | - |
| CSC39_RS00455 () | 67164..67466 | + | 303 | WP_077878372.1 | antirestriction protein | - |
| CSC39_RS00460 () | 67515..67706 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| CSC39_RS00475 () | 68659..68888 | + | 230 | Protein_78 | hypothetical protein | - |
| CSC39_RS00480 () | 68940..70301 | + | 1362 | WP_039052595.1 | DUF3560 domain-containing protein | - |
| CSC39_RS00485 () | 70349..70912 | + | 564 | WP_001377760.1 | class I SAM-dependent methyltransferase | - |
| CSC39_RS25990 () | 70893..71251 | - | 359 | Protein_81 | pilus protein | - |
| CSC39_RS00500 () | 71612..72532 | + | 921 | WP_039052596.1 | aminoimidazole riboside kinase | - |
| CSC39_RS00505 () | 72700..74217 | + | 1518 | WP_039052597.1 | carbohydrate porin | - |
| CSC39_RS00510 () | 74278..75648 | + | 1371 | WP_000344915.1 | sucrose-specific PTS transporter subunit IIBC | - |
| CSC39_RS00515 () | 75648..77057 | + | 1410 | WP_039052598.1 | sucrose-6-phosphate hydrolase | - |
| CSC39_RS00520 () | 77083..78090 | + | 1008 | WP_001232702.1 | LacI family DNA-binding transcriptional regulator | - |
| CSC39_RS00535 () | 78554..79171 | - | 618 | Protein_87 | transposase | - |
| CSC39_RS00545 () | 79344..80041 | + | 698 | Protein_88 | IS1 family transposase | - |
| CSC39_RS00550 () | 80121..80252 | - | 132 | Protein_89 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| CSC39_RS25995 () | 80243..80571 | - | 329 | Protein_90 | hypothetical protein | - |
| CSC39_RS00570 () | 80872..81159 | + | 288 | WP_061856957.1 | hypothetical protein | - |
| CSC39_RS00575 () | 81278..82099 | + | 822 | WP_061856956.1 | DUF945 domain-containing protein | - |
| CSC39_RS00580 () | 82395..82997 | - | 603 | WP_077878371.1 | transglycosylase SLT domain-containing protein | - |
| CSC39_RS00585 () | 83317..83700 | + | 384 | WP_112021707.1 | relaxosome protein TraM | - |
| CSC39_RS00590 () | 83887..84576 | + | 690 | WP_061856953.1 | conjugal transfer transcriptional regulator TraJ | - |
| CSC39_RS00595 () | 84675..85070 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| CSC39_RS00600 () | 85103..85465 | + | 363 | WP_039052460.1 | type IV conjugative transfer system pilin TraA | - |
| CSC39_RS00605 () | 85470..85781 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CSC39_RS00610 () | 85803..86369 | + | 567 | WP_039052461.1 | type IV conjugative transfer system protein TraE | - |
| CSC39_RS00615 () | 86380..87084 | + | 705 | WP_148936096.1 | type-F conjugative transfer system secretin TraK | - |
| CSC39_RS00620 () | 87084..88535 | + | 1452 | WP_039052463.1 | conjugal transfer protein TraB | - |
| CSC39_RS00625 () | 88504..89085 | + | 582 | WP_052273600.1 | conjugal transfer protein TraP | - |
| CSC39_RS00630 () | 89024..89392 | + | 369 | WP_071550054.1 | conjugal transfer protein TrbD | - |
| CSC39_RS00635 () | 89385..89636 | + | 252 | WP_039052465.1 | conjugal transfer protein TrbG | - |
| CSC39_RS00640 () | 89633..90148 | + | 516 | WP_039052466.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CSC39_RS00645 () | 90283..90504 | + | 222 | WP_001278685.1 | conjugal transfer protein TraR | - |
| CSC39_RS00650 () | 90664..93291 | + | 2628 | WP_001064265.1 | type IV secretion system protein TraC | - |
| CSC39_RS00655 () | 93288..93674 | + | 387 | WP_000099693.1 | type-F conjugative transfer system protein TrbI | - |
| CSC39_RS00660 () | 93671..94303 | + | 633 | WP_039052467.1 | type-F conjugative transfer system protein TraW | - |
| CSC39_RS00665 () | 94300..95292 | + | 993 | WP_000830835.1 | conjugal transfer pilus assembly protein TraU | - |
| CSC39_RS00670 () | 95301..95939 | + | 639 | WP_039052468.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CSC39_RS00675 () | 95936..96316 | + | 381 | WP_039052469.1 | hypothetical protein | - |
| CSC39_RS00680 () | 96627..98414 | + | 1788 | WP_039052473.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CSC39_RS00685 () | 98441..98698 | + | 258 | WP_039023152.1 | conjugal transfer protein TrbE | - |
| CSC39_RS00690 () | 98691..99434 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CSC39_RS00695 () | 99450..99797 | + | 348 | WP_001287894.1 | conjugal transfer protein TrbA | - |
| CSC39_RS00700 () | 99916..100200 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CSC39_RS00705 () | 100187..100732 | + | 546 | WP_039052470.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CSC39_RS00710 () | 100662..101024 | + | 363 | WP_071550055.1 | P-type conjugative transfer protein TrbJ | - |
| CSC39_RS00715 () | 101024..102397 | + | 1374 | WP_039023150.1 | conjugal transfer protein TraH | - |
| CSC39_RS00720 () | 102394..105213 | + | 2820 | WP_039023149.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CSC39_RS00725 () | 105232..105729 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| CSC39_RS00730 () | 105761..106492 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| CSC39_RS00735 () | 106745..108934 | + | 2190 | WP_073961454.1 | type IV conjugative transfer system coupling protein TraD | - |
| CSC39_RS00740 () | 108943..109341 | - | 399 | WP_039023147.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| CSC39_RS00745 () | 109341..109568 | - | 228 | WP_039023146.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| CSC39_RS00750 () | 109650..114920 | + | 5271 | WP_039052472.1 | conjugative transfer relaxase/helicase TraI | - |
| CSC39_RS00760 () | 115196..116737 | + | 1542 | WP_002431311.1 | IS21-like element ISEc12 family transposase | - |
| CSC39_RS00765 () | 116752..117498 | + | 747 | WP_001016257.1 | IS21-like element ISEc12 family helper ATPase IstB | - |
| CSC39_RS00770 () | 117526..118272 | + | 747 | WP_052273601.1 | conjugal transfer pilus acetylase TraX | - |
| CSC39_RS00775 () | 118327..118887 | + | 561 | WP_001567328.1 | fertility inhibition protein FinO | - |
| CSC39_RS00780 () | 119018..119227 | + | 210 | WP_039023209.1 | hypothetical protein | - |
| CSC39_RS00785 () | 119639..120265 | + | 627 | WP_029702149.1 | hypothetical protein | - |
| CSC39_RS00790 () | 120417..120986 | + | 570 | WP_112021708.1 | DUF2726 domain-containing protein | - |
| CSC39_RS26000 () | 121361..121627 | + | 267 | WP_087757657.1 | hypothetical protein | - |
| - () | 121766..121827 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 121766..121827 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 121766..121827 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 121766..121827 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| CSC39_RS00805 () | 121814..122020 | + | 207 | WP_032215358.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CSC39_RS00810 () | 122304..122561 | + | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| CSC39_RS00820 () | 122797..122871 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| CSC39_RS00825 () | 122864..123721 | + | 858 | WP_029702152.1 | incFII family plasmid replication initiator RepA | - |
| CSC39_RS00835 () | 124660..125313 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CSC39_RS25710 () | 125406..125663 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CSC39_RS00840 () | 125596..125997 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CSC39_RS00855 () | 126246..126661 | + | 416 | Protein_143 | IS1 family transposase | - |
| CSC39_RS00860 () | 126697..127242 | - | 546 | Protein_144 | Tn3 family transposase | - |
| CSC39_RS00865 () | 127308..128012 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| CSC39_RS00870 () | 128077..128757 | - | 681 | Protein_146 | class 1 integron integrase IntI1 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|