MGE detailed information
MGE type: Conjugative plasmid MGE length: 113645 bp
Accession: NZ_CP030283 Location: 1..113645 Organism: Escherichia coli strain E308 Replicon: plasmid pLKSZ02
Accession: NZ_CP030283 Location: 1..113645 Organism: Escherichia coli strain E308 Replicon: plasmid pLKSZ02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQW89_RS25760 () | 348..699 | - | 352 | Protein_1 | type-F conjugative transfer system protein TrbI | - |
| DQW89_RS27915 () | 696..974 | - | 279 | WP_024188439.1 | hypothetical protein | - |
| DQW89_RS27920 () | 1113..1499 | - | 387 | WP_162883673.1 | hypothetical protein | - |
| DQW89_RS25770 () | 1903..2082 | - | 180 | WP_118394091.1 | hypothetical protein | - |
| DQW89_RS25775 () | 2060..3316 | - | 1257 | WP_118394092.1 | TraC family protein | - |
| DQW89_RS27925 () | 3339..3497 | - | 159 | WP_162883674.1 | hypothetical protein | - |
| DQW89_RS25780 () | 3490..3711 | - | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| DQW89_RS25785 () | 3845..4362 | - | 518 | Protein_8 | type IV conjugative transfer system lipoprotein TraV | - |
| DQW89_RS25790 () | 4359..4610 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| DQW89_RS25795 () | 4622..4801 | - | 180 | Protein_10 | conjugal transfer protein TrbD | - |
| DQW89_RS27930 () | 4808..5056 | - | 249 | Protein_11 | traP family protein | - |
| DQW89_RS27935 () | 5056..5402 | - | 347 | Protein_12 | conjugal transfer protein TraP | - |
| DQW89_RS28120 () | 5392..6818 | - | 1427 | Protein_13 | conjugal transfer protein TraB | - |
| DQW89_RS25810 () | 6829..7545 | - | 717 | Protein_14 | type-F conjugative transfer system secretin TraK | - |
| DQW89_RS25815 () | 7532..8097 | - | 566 | Protein_15 | type IV conjugative transfer system protein TraE | - |
| DQW89_RS25820 () | 8119..8432 | - | 314 | Protein_16 | type IV conjugative transfer system protein TraL | - |
| DQW89_RS25825 () | 8447..8812 | - | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| DQW89_RS25830 () | 8846..9073 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| DQW89_RS25835 () | 9167..9853 | - | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| DQW89_RS25840 () | 10044..10426 | - | 383 | Protein_20 | relaxosome protein TraM | - |
| DQW89_RS25845 () | 10703..11350 | + | 648 | WP_015059008.1 | hypothetical protein | VF |
| DQW89_RS25850 () | 11646..12467 | - | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| DQW89_RS25855 () | 12576..12872 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| DQW89_RS28125 () | 13172..13549 | + | 378 | Protein_24 | hypothetical protein | - |
| DQW89_RS25875 () | 13787..13945 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 13989..14213 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 13989..14213 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 13989..14213 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 13989..14213 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| DQW89_RS27950 () | 14025..14204 | + | 180 | WP_001309233.1 | hypothetical protein | - |
| DQW89_RS25880 () | 14225..14944 | - | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| DQW89_RS25885 () | 14941..15375 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| DQW89_RS25890 () | 15444..17467 | - | 2024 | Protein_29 | ParB/RepB/Spo0J family partition protein | - |
| DQW89_RS25895 () | 17528..17761 | - | 234 | WP_000006003.1 | DUF905 family protein | - |
| DQW89_RS25900 () | 17819..18346 | - | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| DQW89_RS25925 () | 19189..19752 | - | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| DQW89_RS25930 () | 19797..21158 | - | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| DQW89_RS25935 () | 21210..21440 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| DQW89_RS25950 () | 22478..22669 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| DQW89_RS25955 () | 22666..23088 | - | 423 | WP_000271762.1 | DUF1380 family protein | - |
| DQW89_RS25960 () | 23135..23437 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| DQW89_RS28130 () | 23978..24754 | - | 777 | WP_001383963.1 | hypothetical protein | - |
| DQW89_RS25975 () | 24805..25239 | - | 435 | WP_000274503.1 | DUF1380 family protein | - |
| DQW89_RS25980 () | 25253..25474 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| DQW89_RS25985 () | 25475..26158 | - | 684 | WP_000085883.1 | DNA methylase | - |
| DQW89_RS25990 () | 26235..26528 | - | 294 | WP_032146011.1 | hypothetical protein | - |
| DQW89_RS25995 () | 26675..27637 | + | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| DQW89_RS26000 () | 27640..27990 | + | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| DQW89_RS26005 () | 28113..28394 | - | 282 | WP_001333089.1 | hypothetical protein | - |
| DQW89_RS26010 () | 28522..28756 | - | 235 | Protein_46 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DQW89_RS28135 () | 30205..30270 | - | 66 | Protein_47 | IS1 family transposase | - |
| DQW89_RS26030 () | 30336..31040 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| DQW89_RS26040 () | 31462..32337 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| DQW89_RS26045 () | 32384..32860 | - | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| DQW89_RS26050 () | 33119..33862 | - | 744 | Protein_51 | Beta-lactamase TEM | ARG |
| DQW89_RS26055 () | 33912..34616 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DQW89_RS26060 () | 35002..35418 | + | 417 | WP_014839980.1 | Glutathione transferase FosA | ARG |
| DQW89_RS26065 () | 35423..35941 | - | 519 | WP_014839979.1 | hypothetical protein | - |
| DQW89_RS26070 () | 35941..36729 | - | 789 | WP_014839978.1 | winged helix-turn-helix domain-containing protein | - |
| DQW89_RS26075 () | 36749..37219 | - | 471 | WP_049824851.1 | TetR family transcriptional regulator | - |
| DQW89_RS26080 () | 37229..37933 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DQW89_RS26085 () | 38253..39428 | + | 1176 | WP_063865358.1 | Efflux pump periplasmic linker BepF | VF |
| DQW89_RS26090 () | 39452..42604 | + | 3153 | WP_058914901.1 | Efflux pump membrane transporter BepE | VF |
| DQW89_RS26095 () | 42674..43153 | - | 480 | WP_000888203.1 | Rrf2 family transcriptional regulator | - |
| DQW89_RS26100 () | 43242..43946 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| DQW89_RS26105 () | 43996..44232 | - | 237 | Protein_62 | hypothetical protein | - |
| DQW89_RS26110 () | 44253..45047 | - | 795 | WP_000572405.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| DQW89_RS26115 () | 45076..46506 | - | 1431 | Protein_64 | IS4 family transposase IS50R | Transposase |
| DQW89_RS26120 () | 46626..46814 | + | 189 | WP_000957857.1 | hypothetical protein | - |
| DQW89_RS26125 () | 46824..48022 | + | 1199 | Protein_66 | IS91 family transposase | - |
| DQW89_RS27955 () | 48188..48280 | + | 93 | Protein_67 | IS6 family transposase | - |
| DQW89_RS26135 () | 48519..48800 | - | 282 | WP_000220561.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DQW89_RS26140 () | 48790..49041 | - | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| DQW89_RS26150 () | 50276..51114 | + | 839 | Protein_70 | RepB family plasmid replication initiator protein | - |
| DQW89_RS26155 () | 51135..51977 | + | 843 | WP_000435064.1 | replication initiation protein | - |
| DQW89_RS26160 () | 51981..52427 | + | 447 | WP_001074384.1 | hypothetical protein | - |
| DQW89_RS26165 () | 52495..52917 | + | 423 | WP_179292036.1 | DNA distortion polypeptide 3 | - |
| DQW89_RS26175 () | 53403..54602 | - | 1200 | WP_072648941.1 | IS91 family transposase ISSbo1 | Transposase |
| DQW89_RS26180 () | 54612..54800 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| DQW89_RS27960 () | 55030..55134 | + | 105 | WP_032409716.1 | hypothetical protein | - |
| DQW89_RS26185 () | 55263..55520 | + | 258 | WP_000764642.1 | hypothetical protein | - |
| DQW89_RS26190 () | 55578..56354 | - | 777 | WP_000015958.1 | site-specific integrase | - |
| DQW89_RS26195 () | 56351..57094 | - | 744 | WP_000129823.1 | hypothetical protein | - |
| DQW89_RS26200 () | 57145..57495 | - | 351 | WP_000493378.1 | hypothetical protein | - |
| DQW89_RS26210 () | 58175..59170 | + | 996 | WP_000246635.1 | hypothetical protein | - |
| DQW89_RS26215 () | 59174..60106 | + | 933 | WP_000991830.1 | hypothetical protein | - |
| DQW89_RS26220 () | 60404..61492 | + | 1089 | WP_000952231.1 | hypothetical protein | - |
| DQW89_RS26225 () | 61494..62363 | + | 870 | WP_000253407.1 | hypothetical protein | - |
| DQW89_RS26230 () | 62420..63985 | - | 1566 | WP_000741348.1 | ATP-binding protein | - |
| DQW89_RS26240 () | 64293..64523 | + | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| DQW89_RS26245 () | 64520..64666 | + | 147 | Protein_87 | VapC toxin family PIN domain ribonuclease | - |
| DQW89_RS26250 () | 64706..65410 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DQW89_RS26260 () | 65462..67228 | + | 1767 | Protein_89 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| DQW89_RS26265 () | 67307..68311 | + | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| DQW89_RS26270 () | 68493..68669 | - | 177 | WP_000954592.1 | Arm DNA-binding domain-containing protein | - |
| DQW89_RS26285 () | 68999..69814 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| DQW89_RS26290 () | 69875..70678 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| DQW89_RS26295 () | 70678..71514 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| DQW89_RS26305 () | 71820..72065 | + | 246 | WP_058914914.1 | hypothetical protein | - |
| DQW89_RS26310 () | 72094..72744 | - | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| DQW89_RS26315 () | 72850..74049 | + | 1200 | WP_032153701.1 | Tetracycline resistance protein, class C | ARG |
| DQW89_RS26320 () | 74016..74204 | - | 189 | Protein_98 | IS91 family transposase | - |
| DQW89_RS26325 () | 74316..74621 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| DQW89_RS26330 () | 74649..75863 | - | 1215 | WP_023300759.1 | Bicyclomycin resistance protein | ARG |
| DQW89_RS28140 () | 76080..76526 | - | 447 | Protein_101 | DUF3363 domain-containing protein | - |
| DQW89_RS26340 () | 76995..78488 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| DQW89_RS26345 () | 78699..78923 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| DQW89_RS26350 () | 78920..79657 | - | 738 | WP_001446887.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| DQW89_RS27965 () | 80143..80283 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| DQW89_RS26360 () | 80289..80993 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DQW89_RS26365 () | 81265..81945 | + | 681 | Protein_107 | IS91 family transposase ISAzo26 | Transposase |
| DQW89_RS26370 () | 82010..82714 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| DQW89_RS26375 () | 82780..83325 | + | 546 | Protein_109 | Tn3 family transposase TnpA_Tn3 | Transposase |
| DQW89_RS26380 () | 83361..83776 | - | 416 | Protein_110 | IS1 family transposase | - |
| DQW89_RS26395 () | 84025..84426 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| DQW89_RS27970 () | 84359..84616 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| DQW89_RS26400 () | 84709..85362 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| DQW89_RS27975 () | 85460..85600 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| DQW89_RS26410 () | 86285..87157 | - | 873 | WP_162883675.1 | incFII family plasmid replication initiator RepA | - |
| DQW89_RS26415 () | 87150..87224 | - | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| DQW89_RS26425 () | 87469..87717 | - | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
| DQW89_RS26430 () | 88001..88150 | - | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 88195..88254 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 88195..88254 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 88195..88254 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 88195..88254 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| DQW89_RS26440 () | 88455..88685 | - | 231 | WP_001736714.1 | hypothetical protein | - |
| DQW89_RS26445 () | 88849..89448 | - | 600 | WP_032083981.1 | hypothetical protein | - |
| DQW89_RS26450 () | 89834..90034 | - | 201 | WP_015059022.1 | hypothetical protein | - |
| DQW89_RS26455 () | 90166..90726 | - | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| DQW89_RS26460 () | 90781..91527 | - | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| DQW89_RS26465 () | 91547..96817 | - | 5271 | WP_072648275.1 | Multifunctional conjugation protein TraI | Relaxase |
| DQW89_RS26470 () | 96817..99060 | - | 2244 | WP_072646483.1 | type IV conjugative transfer system coupling protein TraD | - |
| DQW89_RS26475 () | 99111..99848 | - | 738 | WP_015059020.1 | hypothetical protein | - |
| DQW89_RS26480 () | 100051..100782 | - | 732 | WP_021559024.1 | complement resistance protein TraT | - |
| DQW89_RS26485 () | 100807..101328 | - | 522 | WP_118394094.1 | conjugal transfer entry exclusion protein TraS | - |
| DQW89_RS26490 () | 101361..104177 | - | 2817 | WP_015059018.1 | conjugal transfer mating pair stabilization protein TraG | - |
| DQW89_RS26495 () | 104174..105547 | - | 1374 | WP_000944325.1 | conjugal transfer protein TraH | - |
| DQW89_RS26500 () | 105534..105926 | - | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| DQW89_RS26505 () | 105880..106254 | - | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| DQW89_RS26510 () | 106184..106729 | - | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| DQW89_RS26515 () | 106716..106997 | - | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| DQW89_RS26520 () | 107113..107856 | - | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| DQW89_RS26525 () | 107849..108106 | - | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| DQW89_RS26530 () | 108133..109983 | - | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| DQW89_RS26535 () | 109980..110402 | - | 423 | WP_001229309.1 | HNH endonuclease | - |
| DQW89_RS26540 () | 110428..110799 | - | 372 | WP_000056336.1 | hypothetical protein | - |
| DQW89_RS26545 () | 110796..111434 | - | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| DQW89_RS26550 () | 111461..111982 | - | 522 | WP_015059014.1 | hypothetical protein | - |
| DQW89_RS26555 () | 112045..112353 | - | 309 | WP_000412447.1 | hypothetical protein | - |
| DQW89_RS26560 () | 112380..113372 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|