MGE detailed information
MGE type: Prophage MGE length: 21673 bp
Accession: NZ_CP030240 Location: 3540935..3562607 Organism: Escherichia coli strain ER1709 Replicon: chromosome
Accession: NZ_CP030240 Location: 3540935..3562607 Organism: Escherichia coli strain ER1709 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQ225_RS22760 () | 3536924..3536971 | + | 48 | WP_211180494.1 | protein YnaN | - |
| DQ225_RS17165 () | 3536985..3537968 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| DQ225_RS17170 () | 3538446..3539819 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| DQ225_RS17175 () | 3539948..3540883 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| DQ225_RS17180 () | 3540935..3542170 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| DQ225_RS17185 () | 3542172..3542387 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| DQ225_RS17190 () | 3542466..3542675 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 3542491..3542669 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 3542491..3542669 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 3542491..3542669 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 3542491..3542669 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| DQ225_RS17195 () | 3542668..3542862 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| DQ225_RS17200 () | 3542919..3543728 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| DQ225_RS17205 () | 3543721..3546321 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| DQ225_RS17210 () | 3546423..3546698 | - | 276 | WP_000632297.1 | protein RacC | - |
| DQ225_RS17215 () | 3546773..3546943 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| DQ225_RS17220 () | 3546943..3547164 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| DQ225_RS17225 () | 3547606..3548094 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| DQ225_RS17230 () | 3548091..3548246 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| DQ225_RS17240 () | 3548700..3549176 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| DQ225_RS17245 () | 3549300..3549596 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| DQ225_RS17250 () | 3549619..3550041 | + | 423 | WP_000693797.1 | phage protein | - |
| DQ225_RS17255 () | 3550054..3550910 | + | 857 | Protein_3335 | DUF1376 domain-containing protein | - |
| DQ225_RS17260 () | 3550917..3551663 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| DQ225_RS17265 () | 3551686..3552138 | + | 453 | Protein_3337 | DUF1627 domain-containing protein | - |
| DQ225_RS17270 () | 3552334..3552519 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| DQ225_RS17275 () | 3552716..3554161 | + | 1446 | Protein_3339 | Trk system potassium transporter TrkG | - |
| DQ225_RS17280 () | 3554310..3554573 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| DQ225_RS17285 () | 3554554..3554913 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| DQ225_RS17290 () | 3555021..3555221 | + | 201 | WP_001755909.1 | hypothetical protein | - |
| DQ225_RS17295 () | 3555387..3556319 | + | 933 | Protein_3343 | phage tail length tape measure family protein | - |
| DQ225_RS17300 () | 3556322..3556537 | + | 216 | Protein_3344 | Ail/Lom family outer membrane beta-barrel protein | - |
| DQ225_RS17305 () | 3556679..3557659 | - | 981 | WP_000019451.1 | IS5 family transposase ISKpn26 | Transposase |
| DQ225_RS17310 () | 3557729..3557917 | + | 189 | Protein_3346 | Ail/Lom family outer membrane beta-barrel protein | - |
| DQ225_RS17315 () | 3557982..3561344 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| DQ225_RS17320 () | 3561344..3561919 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| DQ225_RS17325 () | 3562017..3562607 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DQ225_RS17330 () | 3562924..3563157 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| DQ225_RS17335 () | 3563226..3563339 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| DQ225_RS17340 () | 3564118..3564552 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| DQ225_RS17345 () | 3564693..3565826 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |