MGE detailed information
MGE type: Conjugative plasmid MGE length: 157583 bp
Accession: NZ_CP030165 Location: 1..157583 Organism: Xanthomonas citri pv. punicae strain LMG7439 Replicon: plasmid unnamed
Accession: NZ_CP030165 Location: 1..157583 Organism: Xanthomonas citri pv. punicae strain LMG7439 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XapA_RS23090 () | 378..1040 | - | 663 | Protein_0 | hypothetical protein | - |
| XapA_RS23095 () | 1037..3649 | - | 2613 | Protein_1 | type VI secretion protein | - |
| XapA_RS23100 () | 3670..3965 | - | 296 | Protein_2 | VirB3 family type IV secretion system protein | - |
| XapA_RS23105 () | 3937..4332 | - | 396 | WP_174854921.1 | TrbC/VirB2 family protein | - |
| XapA_RS23110 () | 4618..5579 | + | 962 | Protein_4 | IS1595 family transposase ISXo16 | Transposase |
| XapA_RS23115 () | 5589..5777 | - | 189 | WP_174854922.1 | hypothetical protein | - |
| XapA_RS23120 () | 5957..6247 | - | 291 | WP_003490957.1 | hypothetical protein | - |
| XapA_RS24290 () | 6200..6421 | - | 222 | Protein_7 | hypothetical protein | - |
| XapA_RS23125 () | 6396..6785 | + | 390 | WP_174854923.1 | hypothetical protein | - |
| XapA_RS23130 () | 7052..7795 | + | 744 | WP_174854924.1 | hypothetical protein | - |
| XapA_RS23135 () | 8594..12377 | + | 3784 | Protein_10 | TAL effector repeat-containing protein | - |
| XapA_RS23140 () | 12733..12990 | + | 258 | Protein_11 | DNA-binding protein | - |
| XapA_RS24295 () | 13298..14155 | - | 858 | WP_176558557.1 | hypothetical protein | - |
| XapA_RS23155 () | 14363..14620 | + | 258 | Protein_13 | hypothetical protein | - |
| XapA_RS23160 () | 15139..15958 | + | 820 | Protein_14 | hypothetical protein | - |
| XapA_RS23165 () | 16580..17287 | + | 708 | WP_174854925.1 | DNA-binding protein | - |
| XapA_RS23170 () | 17407..18036 | + | 630 | WP_005934671.1 | AAA family ATPase | - |
| XapA_RS23175 () | 18033..18269 | + | 237 | WP_005934673.1 | hypothetical protein | - |
| XapA_RS23180 () | 18650..18853 | - | 204 | WP_174854874.1 | hypothetical protein | - |
| XapA_RS24300 () | 19536..19955 | + | 420 | WP_176558558.1 | hypothetical protein | - |
| XapA_RS23195 () | 20188..21369 | + | 1182 | Protein_20 | conjugal transfer protein TraW | - |
| XapA_RS23200 () | 21386..21979 | + | 594 | WP_033480599.1 | hypothetical protein | - |
| XapA_RS23205 () | 21976..24173 | + | 2198 | Protein_22 | hypothetical protein | VF |
| XapA_RS23210 () | 24312..24818 | + | 507 | WP_005933813.1 | hypothetical protein | - |
| XapA_RS23215 () | 24829..25644 | + | 816 | WP_174854926.1 | hypothetical protein | - |
| XapA_RS23220 () | 25695..26048 | + | 354 | WP_033480603.1 | hypothetical protein | - |
| XapA_RS23225 () | 26161..26529 | + | 369 | Protein_26 | hypothetical protein | - |
| XapA_RS23230 () | 26716..27408 | + | 693 | WP_033480600.1 | hypothetical protein | - |
| XapA_RS23235 () | 27538..28128 | + | 591 | WP_174854927.1 | hypothetical protein | - |
| XapA_RS23240 () | 28067..28652 | - | 586 | Protein_29 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| XapA_RS23245 () | 28921..29976 | + | 1056 | WP_174854928.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| XapA_RS23250 () | 30218..31396 | + | 1179 | WP_005934659.1 | avirulence B domain protein | - |
| XapA_RS23255 () | 31544..31780 | - | 237 | Protein_32 | transposase | - |
| XapA_RS23265 () | 32014..32511 | + | 498 | Protein_33 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| XapA_RS23270 () | 32529..33225 | + | 697 | Protein_34 | UPF0149 family protein | - |
| XapA_RS23275 () | 33269..33460 | - | 192 | WP_033480620.1 | hypothetical protein | - |
| XapA_RS23280 () | 33460..33753 | - | 294 | WP_033480619.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| XapA_RS23285 () | 33741..34013 | - | 273 | WP_005933973.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| XapA_RS23290 () | 34091..35767 | - | 1677 | WP_005933971.1 | Protein TraI | Relaxase |
| XapA_RS23295 () | 35764..36072 | - | 309 | WP_005933969.1 | hypothetical protein | - |
| XapA_RS23300 () | 36358..36648 | + | 291 | WP_033480618.1 | hypothetical protein | - |
| XapA_RS23305 () | 36645..36947 | + | 303 | WP_033480617.1 | hypothetical protein | - |
| XapA_RS23315 () | 37457..37825 | + | 369 | WP_005933960.1 | hypothetical protein | - |
| XapA_RS23320 () | 37857..38786 | - | 930 | WP_005933956.1 | DNA-binding protein | - |
| XapA_RS23325 () | 40220..40552 | - | 333 | Protein_44 | hypothetical protein | - |
| XapA_RS23340 () | 41087..42049 | - | 963 | WP_005916682.1 | IS1595 family transposase IS1595 | Transposase |
| XapA_RS23355 () | 43362..44732 | - | 1371 | Protein_46 | IS5 family transposase | - |
| XapA_RS23360 () | 45156..45623 | - | 468 | WP_033480592.1 | hypothetical protein | - |
| XapA_RS23365 () | 45864..46706 | - | 843 | WP_050550612.1 | avirulence protein | - |
| XapA_RS23370 () | 46764..46934 | - | 171 | Protein_49 | type III secretion protein | - |
| XapA_RS23375 () | 47094..47620 | + | 527 | Protein_50 | IS3 family transposase ISXac3 | Transposase |
| XapA_RS23380 () | 47784..48062 | + | 279 | WP_005918295.1 | hypothetical protein | - |
| XapA_RS23385 () | 48089..48946 | - | 858 | WP_005918293.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| XapA_RS23390 () | 48939..49853 | - | 915 | WP_005918291.1 | hypothetical protein | - |
| XapA_RS23395 () | 50175..50822 | - | 648 | WP_005933765.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| XapA_RS23400 () | 50916..51624 | + | 709 | Protein_55 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| XapA_RS23405 () | 51621..51920 | + | 300 | WP_033480587.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| XapA_RS23410 () | 52048..52707 | + | 660 | WP_080585904.1 | AAA family ATPase | - |
| XapA_RS23415 () | 52722..52994 | + | 273 | WP_005933773.1 | hypothetical protein | - |
| XapA_RS23420 () | 53244..54218 | + | 975 | WP_050550613.1 | replication initiator protein A | - |
| XapA_RS23430 () | 55137..55664 | - | 528 | WP_174854930.1 | avirulence protein | - |
| XapA_RS23435 () | 55641..56495 | + | 855 | Protein_61 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| XapA_RS23440 () | 56540..59500 | + | 2961 | WP_005933922.1 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| XapA_RS23450 () | 59632..59823 | + | 192 | WP_005918028.1 | antitoxin VbhA family protein | - |
| XapA_RS23455 () | 59840..60742 | - | 903 | WP_033455135.1 | hypothetical protein | - |
| XapA_RS23460 () | 60742..61974 | - | 1233 | WP_033480615.1 | DNA cytosine methyltransferase | - |
| XapA_RS23480 () | 63082..63354 | - | 273 | Protein_66 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| XapA_RS23485 () | 63606..63878 | + | 273 | WP_005933935.1 | CopG family ribbon-helix-helix protein | - |
| XapA_RS23490 () | 63899..65271 | - | 1373 | Protein_68 | IS5 family transposase | - |
| XapA_RS23495 () | 65355..65675 | + | 321 | WP_174854931.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XapA_RS23500 () | 65675..66040 | + | 366 | WP_005934367.1 | XRE family transcriptional regulator | - |
| XapA_RS23505 () | 66037..66393 | + | 357 | WP_005934369.1 | hypothetical protein | - |
| XapA_RS23510 () | 66455..66613 | + | 159 | Protein_72 | transcriptional regulator | - |
| XapA_RS23515 () | 66706..67731 | - | 1026 | WP_005934374.1 | hypothetical protein | - |
| XapA_RS23520 () | 67812..68045 | - | 234 | WP_080585915.1 | hypothetical protein | - |
| XapA_RS23525 () | 68242..69177 | - | 936 | WP_005934377.1 | serine protease | - |
| XapA_RS23530 () | 69164..69385 | - | 222 | WP_005934379.1 | hypothetical protein | - |
| XapA_RS23535 () | 69458..69829 | - | 372 | WP_005934380.1 | hypothetical protein | - |
| XapA_RS23540 () | 69881..73216 | - | 3336 | WP_174854932.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| XapA_RS23545 () | 73410..73661 | + | 252 | WP_005934112.1 | hypothetical protein | - |
| XapA_RS23550 () | 73684..73902 | + | 219 | WP_080585911.1 | conjugal transfer protein TraD | - |
| XapA_RS23555 () | 73934..76462 | + | 2529 | WP_080585912.1 | type IV secretory system conjugative DNA transfer family protein | - |
| XapA_RS23560 () | 76476..76868 | + | 393 | WP_005934119.1 | hypothetical protein | - |
| XapA_RS23565 () | 76981..77901 | - | 921 | WP_005934121.1 | DNA-binding protein | - |
| XapA_RS23570 () | 78027..78951 | - | 925 | Protein_84 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| XapA_RS23575 () | 79159..79392 | + | 234 | Protein_85 | methionine repressor-like protein | - |
| XapA_RS23580 () | 79392..79778 | + | 387 | Protein_86 | putative toxin-antitoxin system toxin component, PIN family | - |
| XapA_RS23585 () | 79812..82781 | + | 2970 | Protein_87 | Tn3 family transposase | - |
| XapA_RS23590 () | 82786..83494 | + | 709 | Protein_88 | UPF0149 family protein | - |
| XapA_RS23595 () | 83964..84164 | + | 201 | WP_005934645.1 | hypothetical protein | - |
| XapA_RS23600 () | 84292..84711 | - | 420 | WP_005934647.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| XapA_RS23605 () | 84708..84962 | - | 255 | WP_033480715.1 | Arc family DNA-binding protein | Antitoxin Detail |
| XapA_RS23610 () | 85296..85541 | - | 246 | WP_157383756.1 | hypothetical protein | - |
| XapA_RS23620 () | 86121..87197 | - | 1077 | WP_174854939.1 | avirulence protein | - |
| XapA_RS23625 () | 87331..88384 | - | 1054 | Protein_94 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| XapA_RS23630 () | 88569..89012 | + | 444 | Protein_95 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| XapA_RS23640 () | 89247..93238 | + | 3992 | Protein_96 | TAL effector repeat-containing protein | - |
| XapA_RS23645 () | 93581..93847 | + | 267 | Protein_97 | DNA-binding protein | - |
| XapA_RS23655 () | 94757..94960 | + | 204 | WP_174854874.1 | hypothetical protein | - |
| XapA_RS24305 () | 95271..95528 | + | 258 | Protein_99 | hypothetical protein | - |
| XapA_RS23665 () | 96050..96867 | + | 818 | Protein_100 | hypothetical protein | - |
| XapA_RS23670 () | 97499..98194 | + | 696 | WP_005934669.1 | DNA-binding protein | - |
| XapA_RS23675 () | 98314..98936 | + | 623 | Protein_102 | AAA family ATPase | - |
| XapA_RS23680 () | 98933..99193 | + | 261 | WP_174854934.1 | hypothetical protein | - |
| XapA_RS24310 () | 99446..100435 | + | 990 | WP_176558559.1 | hypothetical protein | - |
| XapA_RS23700 () | 100710..101474 | + | 765 | Protein_105 | Tn3 family transposase TnpA_TnXo19 | Transposase |
| XapA_RS23710 () | 101543..102693 | - | 1151 | Protein_106 | replication initiation protein | - |
| XapA_RS23715 () | 102941..103255 | - | 315 | WP_005918227.1 | hypothetical protein | - |
| XapA_RS23720 () | 103400..103723 | - | 324 | WP_005918229.1 | hypothetical protein | - |
| XapA_RS23725 () | 103720..104346 | - | 627 | WP_005931726.1 | Chromosome-partitioning ATPase Soj | VF |
| XapA_RS23730 () | 104796..105068 | + | 273 | Protein_110 | hypothetical protein | - |
| XapA_RS23735 () | 105065..105274 | + | 210 | WP_005931732.1 | helix-turn-helix domain-containing protein | - |
| XapA_RS23740 () | 105664..106017 | - | 354 | WP_005931738.1 | hypothetical protein | - |
| XapA_RS23745 () | 106066..106773 | - | 708 | WP_005931741.1 | hypothetical protein | - |
| XapA_RS23750 () | 106770..107216 | - | 447 | WP_033480397.1 | hypothetical protein | - |
| XapA_RS23755 () | 107566..107961 | + | 396 | WP_005931747.1 | hypothetical protein | - |
| XapA_RS23760 () | 108057..108326 | + | 270 | WP_003490597.1 | hypothetical protein | - |
| XapA_RS23765 () | 108323..108616 | + | 294 | WP_005931751.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XapA_RS23770 () | 108729..109349 | + | 621 | WP_005931754.1 | hypothetical protein | - |
| XapA_RS23775 () | 109548..109889 | + | 342 | WP_080585851.1 | hypothetical protein | - |
| XapA_RS23780 () | 110148..111722 | + | 1575 | WP_005931760.1 | type IV secretion system DNA-binding domain-containing protein | - |
| XapA_RS23785 () | 111736..114711 | + | 2976 | WP_005931763.1 | Multifunctional conjugation protein TraI | Relaxase |
| XapA_RS23790 () | 114780..115106 | - | 327 | WP_015462614.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| XapA_RS23795 () | 115103..115321 | - | 219 | WP_003491150.1 | antitoxin MazE family protein | Antitoxin Detail |
| XapA_RS23800 () | 115458..115793 | - | 336 | WP_005931770.1 | hypothetical protein | - |
| XapA_RS23805 () | 115824..116183 | - | 360 | WP_033480402.1 | hypothetical protein | - |
| XapA_RS23810 () | 116358..117236 | - | 879 | WP_005931773.1 | Type IV secretion system protein virB1 | VF |
| XapA_RS23815 () | 117247..118269 | - | 1023 | WP_005931776.1 | Type IV secretion system protein VirB11 | VF |
| XapA_RS23820 () | 118280..119500 | - | 1221 | WP_005931779.1 | Type IV secretion system protein virB10 | VF |
| XapA_RS23825 () | 119502..120284 | - | 783 | WP_011052985.1 | Type IV secretion system protein virB9 | VF |
| XapA_RS23830 () | 120309..120983 | - | 675 | WP_005931784.1 | type IV secretion system protein | - |
| XapA_RS23835 () | 120980..121840 | - | 861 | WP_005931786.1 | type IV secretion system protein | - |
| XapA_RS23840 () | 121842..122231 | - | 390 | WP_033480403.1 | hypothetical protein | - |
| XapA_RS23845 () | 122224..122436 | - | 213 | WP_005931790.1 | hypothetical protein | - |
| XapA_RS23850 () | 122484..123152 | - | 669 | WP_033480400.1 | hypothetical protein | - |
| XapA_RS23855 () | 123149..125782 | - | 2634 | WP_005931796.1 | Type IV secretion system protein virB4 | VF |
| XapA_RS23860 () | 125805..126104 | - | 300 | WP_003490875.1 | VirB3 family type IV secretion system protein | - |
| XapA_RS23865 () | 126101..126472 | - | 372 | WP_005931799.1 | TrbC/VirB2 family protein | - |
| XapA_RS23870 () | 126761..127723 | + | 963 | WP_174854936.1 | IS1595 family transposase ISXo16 | Transposase |
| XapA_RS23875 () | 127733..127921 | - | 189 | WP_174854922.1 | hypothetical protein | - |
| XapA_RS23880 () | 128105..128395 | - | 291 | WP_003490957.1 | hypothetical protein | - |
| XapA_RS24315 () | 128348..128569 | - | 222 | Protein_141 | hypothetical protein | - |
| XapA_RS23885 () | 129133..129953 | + | 821 | Protein_142 | hypothetical protein | - |
| XapA_RS24320 () | 131078..131338 | + | 261 | Protein_143 | TAL effector repeat-containing protein | - |
| XapA_RS23895 () | 131552..134530 | + | 2979 | Protein_144 | TAL effector repeat-containing protein | - |
| XapA_RS23900 () | 134886..135143 | + | 258 | Protein_145 | DNA-binding protein | - |
| XapA_RS23905 () | 135373..135579 | - | 207 | WP_174854937.1 | hypothetical protein | - |
| XapA_RS23915 () | 136010..136213 | + | 204 | WP_174854874.1 | hypothetical protein | - |
| XapA_RS23920 () | 136524..136781 | + | 258 | Protein_148 | hypothetical protein | - |
| XapA_RS23925 () | 137298..138119 | + | 822 | WP_033480729.1 | hypothetical protein | - |
| XapA_RS23930 () | 138743..139474 | + | 732 | WP_174854941.1 | DNA-binding protein | - |
| XapA_RS23935 () | 139557..140181 | + | 625 | Protein_151 | AAA family ATPase | - |
| XapA_RS23940 () | 140178..140414 | + | 237 | WP_005934673.1 | hypothetical protein | - |
| XapA_RS23955 () | 141595..141774 | + | 180 | Protein_153 | hypothetical protein | - |
| XapA_RS23965 () | 142319..143520 | + | 1202 | Protein_154 | conjugal transfer protein TraW | - |
| XapA_RS23970 () | 143520..144086 | + | 567 | Protein_155 | hypothetical protein | - |
| XapA_RS23975 () | 144108..146306 | + | 2199 | Protein_156 | DotA/TraY family protein | - |
| XapA_RS23980 () | 146446..146948 | + | 503 | Protein_157 | hypothetical protein | - |
| XapA_RS23985 () | 146959..147780 | + | 822 | WP_005933815.1 | hypothetical protein | - |
| XapA_RS23990 () | 147831..148184 | + | 354 | WP_033480603.1 | hypothetical protein | - |
| XapA_RS23995 () | 148297..148665 | + | 369 | Protein_160 | hypothetical protein | - |
| XapA_RS24000 () | 148855..149547 | + | 693 | WP_033480600.1 | hypothetical protein | - |
| XapA_RS24005 () | 149696..150271 | + | 576 | WP_157383750.1 | hypothetical protein | - |
| XapA_RS24010 () | 150210..150797 | - | 588 | Protein_163 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| XapA_RS24015 () | 151080..152120 | + | 1041 | WP_174854942.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| XapA_RS24020 () | 152361..153539 | + | 1179 | WP_005934659.1 | avirulence B domain protein | - |
| XapA_RS24025 () | 153687..153922 | - | 236 | Protein_166 | transposase | - |
| XapA_RS24030 () | 154155..154646 | + | 492 | Protein_167 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| XapA_RS24035 () | 154664..155360 | + | 697 | Protein_168 | UPF0149 family protein | - |
| XapA_RS24040 () | 155404..155595 | - | 192 | WP_033480620.1 | hypothetical protein | - |
| XapA_RS24045 () | 155595..155885 | - | 291 | Protein_170 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XapA_RS24050 () | 155873..156141 | - | 269 | Protein_171 | ribbon-helix-helix protein, CopG family | - |
| XapA_RS24055 () | 156219..157556 | - | 1338 | WP_176558560.1 | Protein TraI | Relaxase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|