MGE detailed information
MGE type: Conjugative plasmid MGE length: 89323 bp
Accession: NZ_CP029422 Location: 1..89323 Organism: Escherichia coli strain 3385 Replicon: plasmid unnamed2
Accession: NZ_CP029422 Location: 1..89323 Organism: Escherichia coli strain 3385 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DFS94_RS24930 () | 1261..1359 | + | 99 | Protein_1 | IS1 family transposase | - |
| DFS94_RS24935 () | 1509..2369 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| DFS94_RS24940 () | 2555..3259 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| DFS94_RS24945 () | 3313..3531 | + | 219 | Protein_4 | group II intron reverse transcriptase/maturase | - |
| DFS94_RS24950 () | 3621..4004 | + | 384 | Protein_5 | IS3 family transposase IS629 | Transposase |
| DFS94_RS24955 () | 4033..4437 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| DFS94_RS24960 () | 4434..4781 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| DFS94_RS24965 () | 4830..5775 | + | 946 | Protein_8 | IS66 family transposase ISEc8 | Transposase |
| DFS94_RS24970 () | 5861..6883 | + | 1023 | WP_001310017.1 | IS21 family transposase IS100kyp | Transposase |
| DFS94_RS24975 () | 6880..7662 | + | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| DFS94_RS24980 () | 7730..8338 | + | 609 | Protein_11 | IS66 family transposase ISEc22 | Transposase |
| DFS94_RS24985 () | 8401..9192 | - | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| DFS94_RS24990 () | 9199..11169 | - | 1971 | WP_001298664.1 | Hemin receptor | VF |
| DFS94_RS24995 () | 11451..11887 | + | 437 | Protein_14 | IS3 family transposase IS2 | Transposase |
| DFS94_RS25000 () | 12412..12684 | + | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| DFS94_RS25005 () | 13130..13305 | + | 176 | Protein_16 | IS3 family transposase | - |
| DFS94_RS25010 () | 13531..14700 | - | 1170 | WP_001072358.1 | hypothetical protein | - |
| DFS94_RS25015 () | 15067..15255 | + | 189 | WP_001309252.1 | hypothetical protein | - |
| DFS94_RS25020 () | 15376..16116 | + | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| DFS94_RS25025 () | 16401..17378 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| DFS94_RS25035 () | 18164..18895 | + | 732 | WP_001617898.1 | hypothetical protein | - |
| DFS94_RS25040 () | 19264..19512 | - | 249 | Protein_22 | abortive infection family protein | - |
| DFS94_RS25045 () | 19570..20267 | + | 698 | Protein_23 | IS1 family transposase IS1R | Transposase |
| DFS94_RS25050 () | 20283..20612 | + | 330 | Protein_24 | TOBE domain-containing protein | - |
| DFS94_RS25055 () | 20721..21653 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| DFS94_RS25060 () | 21640..23043 | - | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| DFS94_RS25065 () | 23287..24267 | + | 981 | WP_000019407.1 | IS5 family transposase IS5D | Transposase |
| DFS94_RS25070 () | 24495..24812 | + | 318 | WP_001513659.1 | hypothetical protein | - |
| DFS94_RS25075 () | 24762..25175 | - | 414 | Protein_29 | IS3 family transposase ISLad1 | Transposase |
| DFS94_RS25080 () | 25099..25458 | - | 360 | WP_001513660.1 | hypothetical protein | - |
| DFS94_RS25085 () | 25486..25665 | - | 180 | WP_001513661.1 | hypothetical protein | - |
| DFS94_RS25090 () | 25670..26050 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| DFS94_RS25095 () | 26050..26271 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| DFS94_RS25100 () | 26454..28010 | + | 1557 | WP_001617892.1 | type I restriction-modification system subunit M | - |
| DFS94_RS25105 () | 28007..29278 | + | 1272 | WP_023142242.1 | restriction endonuclease subunit S | - |
| DFS94_RS25110 () | 29400..32516 | + | 3117 | WP_001553854.1 | HsdR family type I site-specific deoxyribonuclease | - |
| DFS94_RS25115 () | 32730..33427 | + | 698 | Protein_37 | IS1 family transposase IS1R | Transposase |
| DFS94_RS25120 () | 33564..34496 | - | 933 | WP_000991832.1 | hypothetical protein | - |
| DFS94_RS25125 () | 34500..35495 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| DFS94_RS25130 () | 36203..36421 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| DFS94_RS25135 () | 36423..36728 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| DFS94_RS25140 () | 36729..37535 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| DFS94_RS25145 () | 38309..39064 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| DFS94_RS25150 () | 39652..40818 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| DFS94_RS25155 () | 40818..41789 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| DFS94_RS25170 () | 42656..43558 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| DFS94_RS25175 () | 43562..43866 | + | 305 | Protein_47 | hypothetical protein | - |
| DFS94_RS25180 () | 43943..44626 | + | 684 | WP_000086185.1 | DNA methylase | - |
| DFS94_RS25185 () | 44627..44848 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| DFS94_RS25190 () | 44862..45296 | + | 435 | WP_000274437.1 | DUF1380 family protein | - |
| DFS94_RS25195 () | 45347..46123 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| DFS94_RS25205 () | 46663..46965 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| DFS94_RS25210 () | 47012..47434 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| DFS94_RS25215 () | 47431..47622 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| DFS94_RS25225 () | 48657..48887 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| DFS94_RS25230 () | 48939..50300 | + | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| DFS94_RS25235 () | 50347..50910 | + | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| DFS94_RS25240 () | 50936..51184 | + | 249 | WP_001553845.1 | hypothetical protein | - |
| DFS94_RS25255 () | 51827..52366 | + | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| DFS94_RS25260 () | 52429..52662 | + | 234 | WP_000005990.1 | DUF905 family protein | - |
| DFS94_RS25265 () | 52728..54686 | + | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| DFS94_RS25270 () | 54741..55175 | + | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| DFS94_RS25275 () | 55172..55891 | + | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| - () | 55903..56089 | + | 187 | NuclAT_0 | - | - |
| - () | 55903..56089 | + | 187 | NuclAT_0 | - | - |
| - () | 55903..56089 | + | 187 | NuclAT_0 | - | - |
| - () | 55903..56089 | + | 187 | NuclAT_0 | - | - |
| DFS94_RS25280 () | 56137..57506 | + | 1370 | WP_085947770.1 | IS3-like element IS150 family transposase | - |
| - () | 57533..57573 | + | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 57533..57573 | + | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 57533..57573 | + | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 57533..57573 | + | 41 | NuclAT_1 | - | Antitoxin Detail |
| DFS94_RS25285 () | 57617..57775 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| DFS94_RS25300 () | 58466..58672 | + | 207 | WP_000275859.1 | hypothetical protein | - |
| DFS94_RS25305 () | 58697..58984 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| DFS94_RS25310 () | 59103..59924 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| DFS94_RS25315 () | 60221..60823 | - | 603 | WP_000243712.1 | hypothetical protein | VF |
| DFS94_RS25320 () | 61154..61537 | + | 384 | WP_001151566.1 | relaxosome protein TraM | - |
| DFS94_RS25325 () | 61671..62348 | + | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| DFS94_RS25330 () | 62436..62663 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| DFS94_RS25335 () | 62697..63059 | + | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| DFS94_RS25340 () | 63142..63839 | + | 698 | Protein_74 | IS1 family transposase | - |
| DFS94_RS25345 () | 63887..64207 | + | 321 | WP_001348757.1 | conjugal transfer protein TrbA | - |
| DFS94_RS25350 () | 64334..64618 | + | 285 | WP_001617873.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| DFS94_RS25355 () | 64605..65150 | + | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| DFS94_RS25360 () | 65080..65427 | + | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| DFS94_RS25365 () | 65375..65800 | + | 426 | WP_001348758.1 | F-type conjugal transfer protein TrbF | - |
| DFS94_RS25370 () | 65787..67160 | + | 1374 | WP_000944328.1 | conjugal transfer protein TraH | - |
| DFS94_RS25375 () | 67157..69976 | + | 2820 | WP_001007062.1 | conjugal transfer mating pair stabilization protein TraG | - |
| DFS94_RS25380 () | 69995..70492 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| DFS94_RS25385 () | 70524..71255 | + | 732 | WP_000850429.1 | complement resistance protein TraT | - |
| DFS94_RS25390 () | 71458..72237 | + | 780 | WP_000199914.1 | hypothetical protein | - |
| DFS94_RS25395 () | 72234..74432 | + | 2199 | WP_024623315.1 | type IV conjugative transfer system coupling protein TraD | - |
| DFS94_RS25400 () | 74432..79702 | + | 5271 | WP_001617867.1 | Multifunctional conjugation protein TraI | Relaxase |
| DFS94_RS25405 () | 79722..80468 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| DFS94_RS25410 () | 80523..81083 | + | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| DFS94_RS25415 () | 81214..81426 | + | 213 | WP_013023861.1 | hypothetical protein | - |
| DFS94_RS25425 () | 81985..82410 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| DFS94_RS25430 () | 82407..82757 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| DFS94_RS25435 () | 82788..84401 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| DFS94_RS25440 () | 84479..84765 | + | 287 | Protein_93 | DUF2726 domain-containing protein | - |
| - () | 84732..84792 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 84732..84792 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 84732..84792 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 84732..84792 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| DFS94_RS25445 () | 84837..84971 | + | 135 | WP_023144756.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| DFS94_RS25450 () | 85268..85522 | + | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| DFS94_RS25835 () | 85628..85762 | + | 135 | Protein_96 | protein CopA/IncA | - |
| DFS94_RS25455 () | 85759..85833 | + | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| DFS94_RS25460 () | 85826..86683 | + | 858 | WP_001617855.1 | incFII family plasmid replication initiator RepA | - |
| DFS94_RS25470 () | 87623..88276 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| DFS94_RS25475 () | 88369..88626 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| DFS94_RS25480 () | 88559..88960 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|