MGE detailed information
MGE type: Conjugative plasmid MGE length: 114412 bp
Accession: NZ_CP029113 Location: 1..114412 Organism: Escherichia coli strain AR435 Replicon: plasmid unnamed1
Accession: NZ_CP029113 Location: 1..114412 Organism: Escherichia coli strain AR435 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC22_RS00015 () | 750..1319 | - | 570 | WP_089634947.1 | hypothetical protein | - |
| CSC22_RS00030 () | 2623..3381 | + | 759 | Protein_2 | site-specific integrase | - |
| CSC22_RS00035 () | 3539..4546 | + | 1008 | WP_108703238.1 | substrate-binding domain-containing protein | - |
| CSC22_RS00040 () | 4642..6768 | + | 2127 | WP_000253905.1 | alpha-galactosidase | - |
| CSC22_RS00045 () | 6831..8108 | + | 1278 | WP_001083369.1 | MFS transporter | - |
| CSC22_RS00050 () | 8105..9538 | + | 1434 | WP_024170639.1 | glycoside hydrolase family 32 protein | - |
| CSC22_RS00055 () | 9733..11127 | + | 1395 | WP_001037799.1 | carbohydrate porin | - |
| CSC22_RS00065 () | 11373..11477 | - | 105 | Protein_8 | thiosulfate reductase cytochrome B subunit | - |
| CSC22_RS00075 () | 11534..12227 | + | 694 | Protein_9 | IS1 family transposase IS1A | Transposase |
| CSC22_RS00080 () | 12243..12866 | + | 624 | WP_000912556.1 | potassium channel family protein | - |
| CSC22_RS00085 () | 12951..13202 | + | 252 | Protein_11 | iron-containing alcohol dehydrogenase | - |
| CSC22_RS00090 () | 13491..13808 | - | 318 | Protein_12 | IS110 family transposase IS1618 | Transposase |
| CSC22_RS00095 () | 13963..14068 | + | 106 | Protein_13 | plasmid SOS inhibition protein A | - |
| - () | 14037..14235 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 14037..14235 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 14037..14235 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 14037..14235 | + | 199 | NuclAT_0 | - | Antitoxin Detail |
| CSC22_RS00100 () | 14300..14458 | + | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CSC22_RS28490 () | 15126..15332 | + | 207 | WP_000275854.1 | hypothetical protein | - |
| CSC22_RS00110 () | 15357..15644 | + | 288 | WP_000107242.1 | hypothetical protein | - |
| CSC22_RS00115 () | 15763..16584 | + | 822 | WP_001234465.1 | DUF945 domain-containing protein | - |
| CSC22_RS00120 () | 16880..17452 | - | 573 | WP_000949660.1 | hypothetical protein | VF |
| CSC22_RS00125 () | 17822..18205 | + | 384 | WP_001063020.1 | relaxosome protein TraM | - |
| CSC22_RS00130 () | 18396..19043 | + | 648 | WP_000332520.1 | conjugal transfer transcriptional regulator TraJ | - |
| CSC22_RS00135 () | 19179..19394 | + | 216 | WP_001352842.1 | conjugal transfer relaxosome protein TraY | - |
| CSC22_RS00140 () | 19437..19802 | + | 366 | WP_000340282.1 | type IV conjugative transfer system pilin TraA | - |
| CSC22_RS00145 () | 19817..20128 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| CSC22_RS00150 () | 20150..20716 | + | 567 | WP_000399790.1 | type IV conjugative transfer system protein TraE | - |
| CSC22_RS00155 () | 20727..21431 | + | 705 | WP_148713163.1 | type-F conjugative transfer system secretin TraK | - |
| CSC22_RS00160 () | 21431..22858 | + | 1428 | WP_001553836.1 | conjugal transfer protein TraB | - |
| CSC22_RS00165 () | 22848..23438 | + | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| CSC22_RS00170 () | 23425..23562 | + | 138 | WP_001553834.1 | conjugal transfer protein TrbD | - |
| CSC22_RS00175 () | 23584..23745 | + | 162 | WP_000741714.1 | conjugal transfer protein TrbD | - |
| CSC22_RS00180 () | 23738..23989 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| CSC22_RS00185 () | 23986..24501 | + | 516 | WP_000809832.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CSC22_RS00190 () | 24636..24857 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| CSC22_RS00195 () | 25017..27644 | + | 2628 | WP_001064264.1 | type IV secretion system protein TraC | - |
| CSC22_RS00200 () | 27641..28027 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| CSC22_RS00205 () | 28024..28656 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| CSC22_RS00210 () | 28653..29645 | + | 993 | WP_001553833.1 | conjugal transfer pilus assembly protein TraU | - |
| CSC22_RS00215 () | 29654..30292 | + | 639 | WP_001553832.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CSC22_RS00220 () | 30289..32097 | + | 1809 | WP_039023153.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CSC22_RS00225 () | 32124..32381 | + | 258 | WP_039023152.1 | conjugal transfer protein TrbE | - |
| CSC22_RS00230 () | 32374..33117 | + | 744 | WP_001030376.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CSC22_RS00235 () | 33133..33480 | + | 348 | WP_001287894.1 | conjugal transfer protein TrbA | - |
| CSC22_RS00240 () | 33599..33883 | + | 285 | WP_000624110.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CSC22_RS00245 () | 33870..34415 | + | 546 | WP_016236310.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CSC22_RS00250 () | 34345..34707 | + | 363 | WP_071550055.1 | P-type conjugative transfer protein TrbJ | - |
| CSC22_RS00255 () | 34707..36080 | + | 1374 | WP_039023150.1 | conjugal transfer protein TraH | - |
| CSC22_RS00260 () | 36077..38896 | + | 2820 | WP_039023149.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CSC22_RS00265 () | 38915..39412 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| CSC22_RS00270 () | 39444..40175 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| CSC22_RS00275 () | 40428..42662 | + | 2235 | WP_062914766.1 | type IV conjugative transfer system coupling protein TraD | - |
| CSC22_RS00280 () | 42671..43069 | - | 399 | WP_039023147.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| CSC22_RS00285 () | 43069..43296 | - | 228 | WP_039023146.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| CSC22_RS00290 () | 43378..48648 | + | 5271 | WP_039023145.1 | Multifunctional conjugation protein TraI | Relaxase |
| CSC22_RS00300 () | 48924..50465 | + | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
| CSC22_RS00305 () | 50480..51226 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| CSC22_RS00310 () | 51254..52000 | + | 747 | WP_052273601.1 | conjugal transfer pilus acetylase TraX | - |
| CSC22_RS00315 () | 52055..52615 | + | 561 | WP_001567328.1 | fertility inhibition protein FinO | - |
| CSC22_RS00320 () | 52746..52955 | + | 210 | WP_039023209.1 | hypothetical protein | - |
| CSC22_RS00325 () | 53367..53993 | + | 627 | WP_029702149.1 | hypothetical protein | - |
| CSC22_RS00330 () | 54145..54714 | + | 570 | WP_029702150.1 | DUF2726 domain-containing protein | - |
| CSC22_RS28495 () | 55089..55355 | + | 267 | WP_087757657.1 | hypothetical protein | - |
| - () | 55494..55555 | - | 62 | NuclAT_1 | - | - |
| - () | 55494..55555 | - | 62 | NuclAT_1 | - | - |
| - () | 55494..55555 | - | 62 | NuclAT_1 | - | - |
| - () | 55494..55555 | - | 62 | NuclAT_1 | - | - |
| CSC22_RS00345 () | 55542..55748 | + | 207 | WP_032215358.1 | type I toxin-antitoxin system Hok family toxin | - |
| CSC22_RS00350 () | 56032..56289 | + | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| CSC22_RS00360 () | 56525..56599 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| CSC22_RS00365 () | 56592..57449 | + | 858 | WP_029702152.1 | incFII family plasmid replication initiator RepA | - |
| CSC22_RS28500 () | 58150..58290 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| CSC22_RS00375 () | 58388..59041 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CSC22_RS28085 () | 59134..59391 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CSC22_RS00380 () | 59324..59725 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CSC22_RS00390 () | 59862..62759 | - | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| CSC22_RS00395 () | 62854..63459 | + | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| CSC22_RS00400 () | 63483..64232 | - | 750 | Protein_71 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| CSC22_RS00405 () | 64221..64628 | + | 408 | WP_001214976.1 | cysteine hydrolase | - |
| CSC22_RS00410 () | 64766..65650 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| CSC22_RS00415 () | 65682..66881 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| CSC22_RS00420 () | 66987..67637 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| CSC22_RS00425 () | 67669..67911 | - | 243 | WP_032140899.1 | hypothetical protein | - |
| CSC22_RS00430 () | 67953..69467 | - | 1515 | Protein_77 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| CSC22_RS00435 () | 69533..70237 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CSC22_RS00445 () | 70439..71227 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CSC22_RS00450 () | 71433..71780 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| CSC22_RS00455 () | 71774..72613 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| CSC22_RS00465 () | 72741..72944 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| CSC22_RS00470 () | 73100..74305 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| CSC22_RS00475 () | 74316..74621 | + | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| CSC22_RS28090 () | 74665..74730 | + | 66 | Protein_85 | EAL domain-containing protein | - |
| CSC22_RS00485 () | 74848..75612 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| CSC22_RS00500 () | 76105..76689 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| CSC22_RS00505 () | 76689..77927 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| CSC22_RS00510 () | 77924..78829 | - | 906 | WP_000219391.1 | hypothetical protein | ARG |
| CSC22_RS00520 () | 78951..79655 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CSC22_RS00525 () | 79713..82127 | + | 2415 | Protein_91 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| CSC22_RS00530 () | 82161..82265 | + | 105 | Protein_92 | IS5/IS1182 family transposase | - |
| CSC22_RS00535 () | 82415..83047 | - | 633 | Protein_93 | histidine-type phosphatase | - |
| CSC22_RS00540 () | 83169..83654 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| CSC22_RS00545 () | 83679..84164 | - | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| CSC22_RS00550 () | 84151..84846 | - | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| CSC22_RS00555 () | 84851..85981 | - | 1131 | WP_000729219.1 | ABC transporter permease | - |
| CSC22_RS00560 () | 85971..87254 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| CSC22_RS00565 () | 87257..88636 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| CSC22_RS00570 () | 88740..89267 | - | 528 | WP_000178050.1 | iron transporter | - |
| CSC22_RS00575 () | 89308..91194 | - | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| CSC22_RS00585 () | 91541..92356 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| CSC22_RS00590 () | 92539..93045 | - | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| CSC22_RS00595 () | 93035..93193 | - | 159 | WP_000449408.1 | DsbA family protein | - |
| CSC22_RS28505 () | 93343..93456 | - | 114 | Protein_105 | IS6 family transposase | - |
| CSC22_RS00610 () | 93656..94353 | + | 698 | Protein_106 | IS1 family transposase IS1X2 | Transposase |
| CSC22_RS00620 () | 94503..95189 | + | 687 | Protein_107 | IS1 family transposase IS1S | Transposase |
| CSC22_RS00630 () | 95443..96465 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| CSC22_RS00635 () | 96450..98015 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| CSC22_RS00640 () | 98090..98506 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CSC22_RS00645 () | 98503..98733 | - | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| CSC22_RS00655 () | 99293..99511 | + | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CSC22_RS00660 () | 99513..99818 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CSC22_RS00665 () | 99819..100625 | + | 807 | WP_000016970.1 | site-specific integrase | - |
| CSC22_RS00670 () | 101347..102102 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| CSC22_RS00675 () | 102690..103856 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| CSC22_RS00680 () | 103856..104827 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CSC22_RS00690 () | 105565..106467 | + | 903 | WP_064766247.1 | DUF1281 domain-containing protein | - |
| CSC22_RS00695 () | 106471..106775 | + | 305 | Protein_119 | hypothetical protein | - |
| CSC22_RS00700 () | 106852..107535 | + | 684 | WP_032181561.1 | DNA methylase | - |
| CSC22_RS00705 () | 107536..107757 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| CSC22_RS00710 () | 107771..108205 | + | 435 | WP_001546462.1 | DUF1380 family protein | - |
| CSC22_RS28095 () | 108250..109020 | + | 771 | WP_001006251.1 | hypothetical protein | - |
| CSC22_RS00725 () | 109557..109859 | + | 303 | WP_001666994.1 | antirestriction protein | - |
| CSC22_RS00730 () | 109906..110328 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| CSC22_RS00735 () | 110325..110516 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| CSC22_RS00740 () | 110788..111036 | - | 249 | WP_071781657.1 | hypothetical protein | - |
| CSC22_RS00750 () | 111553..111783 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| CSC22_RS00755 () | 111835..113196 | + | 1362 | WP_039023242.1 | DUF3560 domain-containing protein | - |
| CSC22_RS00760 () | 113244..113807 | + | 564 | WP_029702196.1 | class I SAM-dependent methyltransferase | - |
| CSC22_RS28510 () | 113893..114400 | - | 508 | Protein_131 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|