MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP028703 Location: 2270208..2291882 Organism: Escherichia coli strain ME8067 Replicon: chromosome
Accession: NZ_CP028703 Location: 2270208..2291882 Organism: Escherichia coli strain ME8067 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBB47_RS24225 () | 2266197..2266244 | + | 48 | WP_211180494.1 | protein YnaN | - |
| DBB47_RS11800 () | 2266258..2267241 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| DBB47_RS11810 () | 2267719..2269092 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| DBB47_RS11815 () | 2269221..2270156 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| DBB47_RS11820 () | 2270208..2271443 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| DBB47_RS11825 () | 2271445..2271660 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| DBB47_RS11830 () | 2271739..2271948 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2271764..2271942 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2271764..2271942 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2271764..2271942 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2271764..2271942 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| DBB47_RS11835 () | 2271941..2272135 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| DBB47_RS11840 () | 2272192..2273001 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| DBB47_RS11845 () | 2272994..2275594 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| DBB47_RS11850 () | 2275696..2275971 | - | 276 | WP_000632297.1 | protein RacC | - |
| DBB47_RS11855 () | 2276046..2276216 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| DBB47_RS11860 () | 2276216..2276437 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| DBB47_RS11870 () | 2276879..2277367 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| DBB47_RS11875 () | 2277364..2277519 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| DBB47_RS11885 () | 2277973..2278449 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| DBB47_RS11890 () | 2278573..2278869 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| DBB47_RS11895 () | 2278892..2279314 | + | 423 | WP_000693797.1 | phage protein | - |
| DBB47_RS11900 () | 2279327..2280184 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| DBB47_RS11905 () | 2280191..2280937 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| DBB47_RS11910 () | 2280960..2281412 | + | 453 | Protein_2165 | DUF1627 domain-containing protein | - |
| DBB47_RS11915 () | 2281608..2281793 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| DBB47_RS11920 () | 2281990..2283447 | + | 1458 | WP_108118689.1 | Trk system potassium transporter TrkG | - |
| DBB47_RS11930 () | 2283585..2283848 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| DBB47_RS11935 () | 2283829..2284188 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| DBB47_RS11945 () | 2284662..2285594 | + | 933 | Protein_2170 | phage tail length tape measure family protein | - |
| DBB47_RS11950 () | 2285597..2285812 | + | 216 | Protein_2171 | Ail/Lom family outer membrane beta-barrel protein | - |
| DBB47_RS11960 () | 2285954..2286934 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| DBB47_RS11965 () | 2287004..2287192 | + | 189 | Protein_2173 | Ail/Lom family outer membrane beta-barrel protein | - |
| DBB47_RS11970 () | 2287257..2290619 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| DBB47_RS11975 () | 2290619..2291194 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| DBB47_RS11980 () | 2291292..2291882 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| DBB47_RS11985 () | 2292199..2292432 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| DBB47_RS23945 () | 2292501..2292614 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| DBB47_RS11990 () | 2293393..2293827 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| DBB47_RS11995 () | 2293968..2295101 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |