MGE detailed information
MGE type: Conjugative plasmid MGE length: 121622 bp
Accession: NZ_CP028488 Location: 1..121622 Organism: Yersinia massiliensis strain GTA Replicon: plasmid unnamed1
Accession: NZ_CP028488 Location: 1..121622 Organism: Yersinia massiliensis strain GTA Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DA391_RS23155 () | 1..2814 | + | 2814 | WP_159074584.1 | Outer membrane protein IcsA autotransporter | VF |
| DA391_RS23160 () | 2929..3546 | + | 618 | WP_088130884.1 | Transcriptional regulatory protein TdiR | VF |
| DA391_RS23165 () | 3844..5049 | - | 1206 | WP_108088326.1 | IS91 family transposase ISVa3 | Transposase |
| DA391_RS23175 () | 5788..5994 | - | 207 | WP_050288967.1 | hypothetical protein | - |
| DA391_RS23180 () | 6142..6855 | - | 714 | WP_050288965.1 | replication initiation protein | - |
| DA391_RS23185 () | 7559..8038 | - | 480 | WP_050288964.1 | Major exported protein | VF |
| DA391_RS23190 () | 8178..10073 | - | 1896 | WP_167398203.1 | ATP-dependent helicase | - |
| DA391_RS23195 () | 10076..11842 | - | 1767 | WP_108087335.1 | AAA family ATPase | - |
| DA391_RS23200 () | 11842..12408 | - | 567 | WP_108087334.1 | Tn3 family transposase ISEc63 | Transposase |
| DA391_RS23205 () | 12585..15590 | + | 3006 | WP_108087333.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| DA391_RS23210 () | 15625..15819 | - | 195 | Protein_10 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| DA391_RS23215 () | 16007..16900 | - | 894 | WP_088130867.1 | hypothetical protein | - |
| DA391_RS23220 () | 16972..17754 | - | 783 | WP_088130866.1 | tyrosine-type recombinase/integrase | - |
| DA391_RS23225 () | 17870..18472 | - | 603 | WP_088130865.1 | hypothetical protein | - |
| DA391_RS23230 () | 18647..19009 | - | 363 | WP_088130864.1 | hypothetical protein | - |
| DA391_RS23240 () | 19546..20166 | + | 621 | WP_088130863.1 | DNA-binding protein | - |
| DA391_RS23245 () | 20163..20696 | + | 534 | WP_088130862.1 | hypothetical protein | - |
| DA391_RS23250 () | 20693..21502 | + | 810 | WP_108088328.1 | hypothetical protein | - |
| DA391_RS23255 () | 21615..22733 | - | 1119 | WP_108088329.1 | DUF4935 domain-containing protein | - |
| DA391_RS23260 () | 23014..23595 | + | 582 | WP_108088330.1 | hypothetical protein | - |
| DA391_RS23265 () | 23768..24823 | + | 1056 | WP_088130858.1 | Abi family protein | - |
| DA391_RS23270 () | 25045..26085 | + | 1041 | WP_088130857.1 | SIR2 family protein | - |
| DA391_RS23275 () | 26088..27908 | + | 1821 | WP_088130856.1 | ATP-binding protein | - |
| DA391_RS23280 () | 28072..28266 | + | 195 | WP_088130855.1 | hypothetical protein | - |
| DA391_RS23285 () | 28476..29807 | - | 1332 | WP_088130854.1 | hypothetical protein | - |
| DA391_RS23290 () | 30126..30389 | + | 264 | WP_088130853.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| DA391_RS23295 () | 30376..30672 | + | 297 | WP_108088331.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DA391_RS23300 () | 30994..32193 | + | 1200 | WP_088130852.1 | AAA family ATPase | - |
| DA391_RS23305 () | 32202..33170 | + | 969 | WP_088130851.1 | ParB/RepB/Spo0J family partition protein | - |
| DA391_RS23315 () | 33620..34560 | - | 941 | Protein_29 | translesion error-prone DNA polymerase V subunit UmuC | - |
| DA391_RS23320 () | 34713..35123 | - | 411 | WP_088130874.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| DA391_RS23325 () | 35534..36355 | + | 822 | WP_088130827.1 | N-6 DNA methylase | - |
| DA391_RS23330 () | 36874..37374 | + | 501 | WP_088130826.1 | hypothetical protein | - |
| DA391_RS23335 () | 37600..38577 | + | 978 | WP_088130825.1 | StbA family protein | - |
| DA391_RS23340 () | 38584..38988 | + | 405 | WP_088130824.1 | plasmid partitioning/stability family protein | - |
| DA391_RS23345 () | 39088..39651 | + | 564 | WP_088130823.1 | helix-turn-helix transcriptional regulator | - |
| DA391_RS23350 () | 39826..40137 | + | 312 | WP_088130822.1 | type II toxin-antitoxin system HigB family toxin | Toxin Detail |
| DA391_RS23355 () | 40137..40571 | + | 435 | WP_088130831.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| DA391_RS24285 () | 41092..41304 | + | 213 | WP_159074585.1 | hypothetical protein | - |
| DA391_RS23365 () | 41532..42461 | + | 930 | WP_159074586.1 | DUF1281 domain-containing protein | - |
| DA391_RS24395 () | 42720..42938 | - | 219 | WP_176396509.1 | hypothetical protein | - |
| DA391_RS23375 () | 42923..43423 | + | 501 | WP_167398252.1 | antirestriction protein ArdA | - |
| DA391_RS23380 () | 43467..43670 | + | 204 | WP_088130818.1 | hypothetical protein | - |
| DA391_RS23390 () | 44350..44631 | + | 282 | WP_088130816.1 | ribulokinase | - |
| DA391_RS23395 () | 44725..46740 | + | 2016 | WP_088130815.1 | ParB/RepB/Spo0J family partition protein | - |
| DA391_RS23400 () | 46779..47225 | + | 447 | WP_088130814.1 | conjugation system SOS inhibitor PsiB | - |
| DA391_RS23405 () | 47222..47983 | + | 762 | WP_088130813.1 | plasmid SOS inhibition protein A | - |
| DA391_RS23410 () | 47973..48245 | + | 273 | WP_088130812.1 | hypothetical protein | - |
| DA391_RS23415 () | 48912..49229 | + | 318 | WP_088130811.1 | hypothetical protein | - |
| DA391_RS23420 () | 49284..49622 | + | 339 | WP_088130810.1 | hypothetical protein | - |
| DA391_RS23425 () | 49712..49957 | + | 246 | WP_088130809.1 | hypothetical protein | - |
| DA391_RS23430 () | 50012..50386 | + | 375 | WP_088130808.1 | hypothetical protein | - |
| DA391_RS23435 () | 50858..51679 | + | 822 | WP_088130807.1 | DUF945 domain-containing protein | - |
| DA391_RS23440 () | 51724..52035 | + | 312 | WP_088130806.1 | hypothetical protein | - |
| DA391_RS23445 () | 52166..52504 | - | 339 | WP_088130805.1 | mobilization protein MobC | - |
| DA391_RS23450 () | 52773..53123 | + | 351 | WP_088130804.1 | mobilization protein | - |
| DA391_RS23455 () | 53120..55075 | + | 1956 | WP_088130803.1 | Protein TraI | Relaxase |
| DA391_RS23460 () | 55137..55454 | - | 318 | WP_088130801.1 | hypothetical protein | - |
| DA391_RS23465 () | 55515..56000 | - | 486 | WP_108088352.1 | phospholipase D family protein | - |
| DA391_RS23470 () | 56427..58463 | - | 2037 | WP_088130830.1 | conjugal transfer protein TrbC | - |
| DA391_RS23475 () | 58645..59307 | - | 663 | WP_129111489.1 | thioredoxin fold domain-containing protein | - |
| DA391_RS23480 () | 59669..60991 | - | 1323 | WP_176396512.1 | conjugal transfer protein TrbA | - |
| DA391_RS23485 () | 61147..61674 | - | 528 | WP_108088334.1 | hypothetical protein | - |
| DA391_RS23490 () | 61694..63826 | - | 2133 | WP_108088335.1 | DotA/TraY family protein | - |
| DA391_RS23495 () | 63940..64539 | - | 600 | WP_108088336.1 | conjugal transfer protein TraX | - |
| DA391_RS23500 () | 64532..65761 | - | 1230 | WP_108088337.1 | conjugal transfer protein TraW | - |
| DA391_RS23505 () | 65952..69026 | - | 3075 | WP_108088338.1 | conjugal transfer protein | - |
| DA391_RS23510 () | 69029..69634 | - | 606 | WP_108088339.1 | hypothetical protein | - |
| DA391_RS23515 () | 69725..70129 | - | 405 | WP_108088340.1 | hypothetical protein | - |
| DA391_RS23520 () | 70144..70674 | - | 531 | WP_108088341.1 | conjugal transfer protein TraQ | - |
| DA391_RS23525 () | 70683..71417 | - | 735 | WP_088130789.1 | hypothetical protein | - |
| DA391_RS23530 () | 71417..72628 | - | 1212 | WP_088130787.1 | conjugal transfer protein TraO | - |
| DA391_RS23535 () | 72633..73643 | - | 1011 | WP_088130785.1 | hypothetical protein | VF |
| DA391_RS23540 () | 73646..74320 | - | 675 | WP_088130783.1 | hypothetical protein | VF |
| DA391_RS23545 () | 74405..74890 | - | 486 | WP_108088342.1 | hypothetical protein | - |
| DA391_RS23550 () | 74900..78100 | - | 3201 | WP_108088343.1 | hypothetical protein | - |
| DA391_RS23555 () | 78159..78425 | - | 267 | WP_050074346.1 | IcmT/TraK family protein | - |
| DA391_RS23560 () | 78425..79600 | - | 1176 | WP_108088344.1 | putative protein YggR | VF |
| DA391_RS23565 () | 79620..80408 | - | 789 | WP_050074349.1 | hypothetical protein | VF |
| DA391_RS23570 () | 80405..80860 | - | 456 | WP_108088345.1 | DotD/TraH family lipoprotein | - |
| DA391_RS23575 () | 81008..82285 | - | 1278 | WP_088130772.1 | hypothetical protein | VF |
| DA391_RS23580 () | 82275..82943 | - | 669 | WP_088130829.1 | hypothetical protein | VF |
| DA391_RS23585 () | 82940..83410 | - | 471 | WP_088130770.1 | hypothetical protein | VF |
| DA391_RS23590 () | 83420..84028 | - | 609 | WP_088130769.1 | hypothetical protein | VF |
| DA391_RS23595 () | 84051..85178 | - | 1128 | WP_088130767.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| DA391_RS23600 () | 85237..86739 | - | 1503 | WP_176396511.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| DA391_RS23605 () | 86741..87277 | - | 537 | WP_088130765.1 | type IV pilus biogenesis protein PilP | - |
| DA391_RS23610 () | 87264..88529 | - | 1266 | WP_088130763.1 | type 4b pilus protein PilO2 | - |
| DA391_RS23615 () | 88534..90174 | - | 1641 | WP_088130761.1 | Outer membrane lipoprotein BfpB | VF |
| DA391_RS23620 () | 90185..90610 | - | 426 | WP_088130760.1 | type IV pilus biogenesis protein PilM | - |
| DA391_RS23625 () | 90607..91614 | - | 1008 | WP_088130758.1 | hypothetical protein | VF |
| DA391_RS24295 () | 91601..91960 | + | 360 | WP_129111488.1 | hypothetical protein | - |
| DA391_RS23640 () | 92185..92667 | - | 483 | WP_088130754.1 | antitermination protein NusG | - |
| DA391_RS23645 () | 93837..94787 | + | 951 | WP_088130752.1 | Replication protein | - |
| DA391_RS23650 () | 95568..96491 | + | 924 | WP_088130750.1 | hypothetical protein | - |
| DA391_RS23655 () | 96681..98036 | + | 1356 | WP_108088346.1 | FRG domain-containing protein | - |
| DA391_RS23660 () | 98338..99045 | - | 708 | WP_088130748.1 | replication initiation protein | - |
| DA391_RS23665 () | 99502..99855 | + | 354 | WP_025376942.1 | As(III)-sensing metalloregulatory transcriptional repressor ArsR | - |
| DA391_RS23670 () | 99903..100265 | + | 363 | WP_025376941.1 | arsenite efflux transporter metallochaperone ArsD | - |
| DA391_RS23675 () | 100282..102033 | + | 1752 | WP_025376940.1 | arsenical pump-driving ATPase | - |
| DA391_RS23680 () | 102080..103369 | + | 1290 | WP_025376939.1 | arsenic transporter | - |
| DA391_RS23685 () | 103382..103807 | + | 426 | WP_025376938.1 | glutaredoxin-dependent arsenate reductase | - |
| DA391_RS23690 () | 103825..104406 | - | 582 | WP_025376937.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| DA391_RS23695 () | 104566..104958 | + | 393 | Protein_103 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| DA391_RS23700 () | 105012..105707 | - | 696 | Protein_104 | IS6 family transposase ISYps1 | Transposase |
| DA391_RS23705 () | 106007..106645 | + | 639 | WP_108088347.1 | DUF1120 domain-containing protein | - |
| DA391_RS23710 () | 107137..107778 | + | 642 | WP_087769695.1 | DUF1120 domain-containing protein | - |
| DA391_RS23715 () | 107874..108395 | - | 522 | Protein_107 | IS6 family transposase ISYps1 | Transposase |
| DA391_RS23720 () | 108462..108767 | - | 306 | WP_108088348.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| DA391_RS24300 () | 108778..108945 | - | 168 | WP_159074587.1 | hypothetical protein | - |
| DA391_RS24305 () | 109216..109380 | - | 165 | WP_159074588.1 | hypothetical protein | - |
| DA391_RS23730 () | 110058..110798 | - | 741 | WP_098905038.1 | fimbria/pilus periplasmic chaperone | - |
| DA391_RS23735 () | 110855..113233 | - | 2379 | WP_108088349.1 | fimbrial biogenesis outer membrane usher protein | - |
| DA391_RS23740 () | 113351..113992 | - | 642 | WP_087769695.1 | DUF1120 domain-containing protein | - |
| DA391_RS23745 () | 114484..115122 | - | 639 | WP_108088347.1 | DUF1120 domain-containing protein | - |
| DA391_RS23750 () | 115422..116117 | + | 696 | Protein_115 | IS6 family transposase ISYps1 | Transposase |
| DA391_RS23755 () | 116170..117045 | + | 876 | Protein_116 | ISL3 family transposase ISSoEn4 | Transposase |
| DA391_RS23760 () | 117533..118258 | + | 726 | WP_159074589.1 | N-6 DNA methylase | - |
| DA391_RS23765 () | 118396..118686 | + | 291 | WP_049615238.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DA391_RS23770 () | 118698..119027 | + | 330 | WP_049615233.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| DA391_RS23775 () | 119433..120038 | - | 606 | Protein_120 | IS91 family transposase ISVa3 | Transposase |
| DA391_RS23780 () | 120037..120258 | + | 222 | Protein_121 | Tn3 family transposase | - |
| DA391_RS23785 () | 120324..120617 | - | 294 | Protein_122 | IS91 family transposase ISVa3 | Transposase |
| DA391_RS23790 () | 120700..121086 | - | 387 | Protein_123 | IS6 family transposase ISYps1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|