MGE detailed information
MGE type: Conjugative plasmid MGE length: 93170 bp
Accession: NZ_CP027327 Location: 1..93170 Organism: Escherichia coli strain 2013C-4830 Replicon: plasmid unnamed2
Accession: NZ_CP027327 Location: 1..93170 Organism: Escherichia coli strain 2013C-4830 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N65_RS27795 () | 259..693 | - | 435 | WP_000274493.1 | DUF1380 family protein | - |
| C6N65_RS27800 () | 707..928 | - | 222 | WP_001104893.1 | hypothetical protein | - |
| C6N65_RS27805 () | 929..1612 | - | 684 | WP_000086148.1 | DNA methylase | - |
| C6N65_RS27810 () | 1688..1999 | - | 312 | WP_014640311.1 | hypothetical protein | - |
| C6N65_RS28975 () | 2025..2432 | - | 408 | Protein_5 | DUF1281 domain-containing protein | - |
| C6N65_RS27815 () | 2406..2951 | - | 546 | Protein_6 | DUF1281 domain-containing protein | - |
| C6N65_RS27825 () | 3315..3563 | + | 249 | WP_000618111.1 | DinI-like family protein | - |
| C6N65_RS27830 () | 3560..3997 | + | 438 | WP_000109072.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C6N65_RS27835 () | 3997..5272 | + | 1276 | Protein_9 | Y-family DNA polymerase | - |
| C6N65_RS27840 () | 5274..5690 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| C6N65_RS27845 () | 5683..6663 | - | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| C6N65_RS27850 () | 7077..7385 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| C6N65_RS27855 () | 7472..8116 | - | 645 | WP_001144036.1 | ParA family protein | - |
| C6N65_RS27860 () | 8296..9102 | - | 807 | WP_106918818.1 | site-specific integrase | - |
| C6N65_RS27865 () | 9103..9408 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C6N65_RS27870 () | 9410..9628 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C6N65_RS27875 () | 10188..11114 | + | 927 | WP_001290416.1 | hypothetical protein | - |
| C6N65_RS27880 () | 11159..11413 | + | 255 | WP_000678527.1 | hypothetical protein | - |
| C6N65_RS27885 () | 11912..12256 | + | 345 | WP_000793307.1 | hypothetical protein | - |
| C6N65_RS27890 () | 12432..13433 | - | 1002 | WP_106918819.1 | DUF4238 domain-containing protein | - |
| C6N65_RS27895 () | 13784..14041 | + | 258 | WP_000371888.1 | hypothetical protein | - |
| C6N65_RS27900 () | 14041..14631 | + | 591 | WP_000194553.1 | hypothetical protein | - |
| C6N65_RS27905 () | 14651..14997 | - | 347 | Protein_23 | hypothetical protein | - |
| C6N65_RS27910 () | 15116..15463 | + | 348 | WP_000762570.1 | colicin 1B immunity protein | - |
| C6N65_RS27915 () | 15481..17361 | - | 1881 | WP_001283341.1 | colicin 1B | - |
| C6N65_RS27920 () | 17640..18986 | - | 1347 | WP_001132032.1 | hypothetical protein | - |
| C6N65_RS27930 () | 19339..19941 | + | 603 | WP_000517695.1 | hypothetical protein | - |
| C6N65_RS27935 () | 19997..20491 | + | 495 | WP_001459505.1 | hypothetical protein | - |
| C6N65_RS28980 () | 20491..20757 | + | 267 | WP_000955263.1 | hypothetical protein | - |
| C6N65_RS27950 () | 21234..21707 | - | 474 | WP_001334658.1 | hypothetical protein | - |
| C6N65_RS27955 () | 21824..22672 | - | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| C6N65_RS27960 () | 22712..22993 | - | 282 | WP_000970007.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6N65_RS27965 () | 22990..23259 | - | 270 | WP_000079941.1 | hypothetical protein | Antitoxin Detail |
| C6N65_RS28985 () | 23314..23472 | - | 159 | WP_000841008.1 | hypothetical protein | - |
| C6N65_RS27980 () | 24168..25199 | - | 1032 | WP_000907863.1 | replication initiation protein | - |
| C6N65_RS27995 () | 26172..26435 | + | 264 | WP_001324596.1 | ash family protein | - |
| C6N65_RS28000 () | 26353..26640 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| C6N65_RS28010 () | 27082..27615 | + | 534 | WP_001306770.1 | transcription termination factor NusG | - |
| C6N65_RS28015 () | 27868..28551 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| C6N65_RS28025 () | 28724..29275 | + | 552 | WP_000744644.1 | hypothetical protein | - |
| C6N65_RS28030 () | 29437..29691 | + | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| C6N65_RS28035 () | 29734..30186 | + | 453 | WP_000008894.1 | hypothetical protein | - |
| C6N65_RS28050 () | 30860..31926 | + | 1067 | Protein_43 | hypothetical protein | VF |
| C6N65_RS28055 () | 31926..32363 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| C6N65_RS28060 () | 32377..34058 | + | 1682 | Protein_45 | Outer membrane lipoprotein BfpB | VF |
| C6N65_RS28065 () | 34051..35346 | + | 1296 | WP_021560540.1 | hypothetical protein | VF |
| C6N65_RS28070 () | 35333..35785 | + | 453 | WP_001247336.1 | hypothetical protein | VF |
| C6N65_RS28075 () | 35796..37349 | + | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| C6N65_RS28080 () | 37362..38459 | + | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| C6N65_RS28085 () | 38477..39091 | + | 615 | WP_000959785.1 | hypothetical protein | VF |
| C6N65_RS28090 () | 39101..39661 | + | 561 | WP_000014116.1 | hypothetical protein | VF |
| C6N65_RS28095 () | 39646..40302 | + | 657 | WP_001193553.1 | hypothetical protein | VF |
| C6N65_RS28100 () | 40302..41593 | + | 1292 | Protein_53 | hypothetical protein | VF |
| C6N65_RS28110 () | 41995..43149 | + | 1155 | WP_001139957.1 | integrase | - |
| C6N65_RS28115 () | 43300..44124 | + | 825 | WP_001238939.1 | hypothetical protein | - |
| C6N65_RS28120 () | 44209..45411 | + | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| C6N65_RS28125 () | 45470..46054 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| C6N65_RS28130 () | 46449..46907 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| C6N65_RS28135 () | 46904..47722 | + | 819 | WP_000646098.1 | hypothetical protein | VF |
| C6N65_RS28140 () | 47719..48867 | + | 1149 | WP_001024972.1 | putative protein YggR | VF |
| C6N65_RS28145 () | 48864..49154 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| C6N65_RS28150 () | 49169..49720 | + | 552 | WP_000014583.1 | Phospholipase D | VF |
| C6N65_RS28155 () | 49809..53576 | + | 3768 | WP_063267538.1 | DNA primase | - |
| C6N65_RS28160 () | 53594..53941 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| C6N65_RS28165 () | 53938..54630 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| C6N65_RS28170 () | 54641..55624 | + | 984 | WP_001191879.1 | hypothetical protein | VF |
| C6N65_RS28175 () | 55627..56916 | + | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| C6N65_RS28180 () | 56916..57620 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| C6N65_RS28185 () | 57620..58147 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| C6N65_RS28190 () | 58198..58602 | + | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| C6N65_RS28195 () | 58666..58854 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| C6N65_RS28200 () | 58838..59638 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| C6N65_RS28205 () | 59728..62772 | + | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| C6N65_RS28210 () | 62772..63386 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| C6N65_RS28215 () | 63353..64555 | + | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| C6N65_RS28220 () | 64584..65168 | + | 585 | WP_001037982.1 | IncI1-type conjugal transfer protein TraX | - |
| C6N65_RS28225 () | 65264..67432 | + | 2169 | WP_063267537.1 | IncI1-type conjugal transfer membrane protein TraY | - |
| C6N65_RS28230 () | 67508..68122 | + | 615 | WP_000578649.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C6N65_RS28235 () | 68220..68429 | + | 210 | WP_001140545.1 | hemolysin expression modulator Hha | - |
| C6N65_RS28990 () | 68638..68814 | + | 177 | WP_001054897.1 | hypothetical protein | - |
| C6N65_RS28240 () | 69473..69724 | + | 252 | WP_001291965.1 | hypothetical protein | - |
| C6N65_RS28245 () | 69796..69948 | - | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| - () | 70003..70060 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 70003..70060 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 70003..70060 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| - () | 70003..70060 | + | 58 | NuclAT_0 | - | Antitoxin Detail |
| C6N65_RS28250 () | 70240..71448 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| C6N65_RS28255 () | 71467..72537 | + | 1071 | WP_059277929.1 | IncI1-type conjugal transfer protein TrbB | - |
| C6N65_RS28995 () | 72530..73675 | + | 1146 | WP_199852764.1 | hypothetical protein | - |
| C6N65_RS29000 () | 73996..74820 | + | 825 | WP_199852765.1 | icmO-like type IV secretion system domain protein | - |
| C6N65_RS28265 () | 74893..75711 | - | 819 | WP_059277930.1 | DUF2971 domain-containing protein | - |
| C6N65_RS28270 () | 75834..78536 | - | 2703 | WP_063267536.1 | Protein TraI | Relaxase |
| C6N65_RS28275 () | 78547..78879 | - | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| C6N65_RS28280 () | 79114..79449 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| C6N65_RS28285 () | 79534..80382 | - | 849 | WP_063267535.1 | DUF4942 domain-containing protein | - |
| C6N65_RS28295 () | 80963..81214 | + | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| C6N65_RS28300 () | 81245..81450 | - | 206 | Protein_93 | hypothetical protein | VF |
| C6N65_RS28305 () | 81511..82452 | - | 942 | WP_000038340.1 | Recombination-promoting nuclease RpnA | VF |
| C6N65_RS28310 () | 82517..82783 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| C6N65_RS28315 () | 82877..83311 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| C6N65_RS28785 () | 83600..83899 | + | 300 | WP_001348082.1 | hypothetical protein | - |
| C6N65_RS28325 () | 84039..84539 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| C6N65_RS28335 () | 84987..86146 | - | 1160 | Protein_99 | IS200-IS605 family transposase ISEc46 | Transposase |
| C6N65_RS28340 () | 86295..87013 | - | 719 | Protein_100 | plasmid SOS inhibition protein A | - |
| C6N65_RS28345 () | 87010..87444 | - | 435 | WP_058665227.1 | conjugation system SOS inhibitor PsiB | - |
| C6N65_RS28350 () | 87499..89424 | - | 1926 | Protein_102 | ParB/RepB/Spo0J family partition protein | - |
| C6N65_RS28355 () | 89515..89748 | - | 234 | WP_000006012.1 | DUF905 family protein | - |
| C6N65_RS28360 () | 89805..90332 | - | 528 | WP_001276114.1 | single-stranded DNA-binding protein | - |
| C6N65_RS29010 () | 90685..91032 | - | 348 | WP_001303314.1 | hypothetical protein | - |
| C6N65_RS28375 () | 91104..91295 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| C6N65_RS28380 () | 91292..91714 | - | 423 | WP_000271763.1 | DUF1380 family protein | - |
| C6N65_RS28385 () | 91761..92063 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| C6N65_RS29005 () | 92428..92628 | - | 201 | Protein_109 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|