MGE detailed information
MGE type: Conjugative plasmid MGE length: 127667 bp
Accession: NZ_CP027324 Location: 1..127667 Organism: Escherichia coli strain 2013C-3033 Replicon: plasmid unnamed
Accession: NZ_CP027324 Location: 1..127667 Organism: Escherichia coli strain 2013C-3033 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6N24_RS28645 () | 1164..1805 | + | 642 | WP_024221658.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6N24_RS28650 () | 1854..2651 | - | 798 | Protein_2 | IS91 family transposase ISEc37 | Transposase |
| C6N24_RS28655 () | 2651..3016 | - | 366 | WP_089611745.1 | transposase | - |
| C6N24_RS28660 () | 3478..3609 | - | 132 | WP_106894632.1 | colicin 10 lysis protein | - |
| C6N24_RS28665 () | 3634..3924 | + | 291 | WP_089611770.1 | Cki family colicin immunity protein | - |
| C6N24_RS28670 () | 4191..4490 | - | 300 | WP_089611719.1 | XRE family transcriptional regulator | Antitoxin Detail |
| C6N24_RS28675 () | 4490..4837 | - | 348 | WP_089611717.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6N24_RS28685 () | 5250..6116 | - | 867 | WP_106894634.1 | DMT family transporter | - |
| C6N24_RS28690 () | 6338..7546 | - | 1209 | WP_106894635.1 | IS91 family transposase ISSbo1 | Transposase |
| C6N24_RS28695 () | 7527..7799 | - | 273 | WP_000019163.1 | hypothetical protein | - |
| C6N24_RS28710 () | 9599..10093 | + | 495 | WP_089611583.1 | GNAT family N-acetyltransferase | - |
| C6N24_RS28725 () | 10623..11210 | + | 588 | WP_062893098.1 | colanic acid biosynthesis acetyltransferase | - |
| C6N24_RS28730 () | 11492..12084 | - | 593 | Protein_14 | proQ/FINO family protein | - |
| C6N24_RS28740 () | 12681..13271 | - | 591 | WP_106894637.1 | hypothetical protein | - |
| C6N24_RS28745 () | 13268..13528 | - | 261 | WP_019842588.1 | hypothetical protein | - |
| C6N24_RS28755 () | 14097..14510 | + | 414 | WP_000465043.1 | hypothetical protein | - |
| C6N24_RS28760 () | 14512..15291 | + | 780 | WP_001164198.1 | site-specific integrase | - |
| C6N24_RS28765 () | 15471..16115 | + | 645 | WP_001144036.1 | ParA family protein | - |
| C6N24_RS28770 () | 16202..16510 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| C6N24_RS28775 () | 16924..17904 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| C6N24_RS28780 () | 17897..18313 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| C6N24_RS28785 () | 18315..19589 | - | 1275 | WP_106894639.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| C6N24_RS28790 () | 19589..20026 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| C6N24_RS28795 () | 20023..20271 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| C6N24_RS28805 () | 20689..21591 | + | 903 | WP_159032362.1 | DUF1281 domain-containing protein | - |
| C6N24_RS28810 () | 21595..21899 | + | 305 | Protein_27 | hypothetical protein | - |
| C6N24_RS28815 () | 21976..22659 | + | 684 | WP_032219114.1 | DNA methylase | - |
| C6N24_RS28820 () | 22660..22881 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| C6N24_RS28825 () | 22895..23329 | + | 435 | WP_040072501.1 | DUF1380 family protein | - |
| C6N24_RS28830 () | 23374..24144 | + | 771 | WP_106894641.1 | hypothetical protein | - |
| C6N24_RS28840 () | 24682..24984 | + | 303 | WP_001436678.1 | antirestriction protein | - |
| C6N24_RS28845 () | 25031..25453 | + | 423 | WP_106894642.1 | DUF1380 family protein | - |
| C6N24_RS28850 () | 25450..25641 | + | 192 | WP_001027494.1 | hypothetical protein | - |
| C6N24_RS28860 () | 25919..27586 | - | 1668 | WP_106894644.1 | group II intron reverse transcriptase/maturase | - |
| C6N24_RS28875 () | 28753..29280 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| C6N24_RS28880 () | 29338..29571 | + | 234 | WP_089611819.1 | DUF905 domain-containing protein | - |
| C6N24_RS28885 () | 29630..31588 | + | 1959 | WP_106894645.1 | ParB/RepB/Spo0J family partition protein | - |
| C6N24_RS28890 () | 31643..32077 | + | 435 | WP_097501877.1 | conjugation system SOS inhibitor PsiB | - |
| C6N24_RS28895 () | 32074..32793 | + | 720 | WP_001276264.1 | plasmid SOS inhibition protein A | - |
| C6N24_RS28900 () | 32790..33386 | + | 597 | WP_106894646.1 | hypothetical protein | - |
| C6N24_RS28910 () | 33852..34352 | + | 501 | WP_014065718.1 | antirestriction protein ArdA | - |
| C6N24_RS30130 () | 34661..34735 | - | 75 | Protein_43 | pilus protein | - |
| C6N24_RS28920 () | 35084..35518 | + | 435 | WP_089611668.1 | post-segregation killing protein PndC | - |
| C6N24_RS28925 () | 35611..35877 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| C6N24_RS28930 () | 35942..36856 | + | 915 | WP_106894647.1 | Recombination-promoting nuclease RpnA | VF |
| C6N24_RS28935 () | 36917..37123 | + | 207 | WP_001532090.1 | hypothetical protein | VF |
| C6N24_RS30135 () | 37154..37404 | - | 251 | Protein_48 | helix-turn-helix domain-containing protein | - |
| C6N24_RS28945 () | 37540..37814 | - | 275 | Protein_49 | hypothetical protein | - |
| C6N24_RS28960 () | 38453..38773 | + | 321 | WP_062877219.1 | hypothetical protein | - |
| C6N24_RS28965 () | 38855..39769 | + | 915 | WP_106894650.1 | Recombination-promoting nuclease RpnD | VF |
| C6N24_RS28975 () | 40865..41344 | + | 480 | WP_062877217.1 | hypothetical protein | - |
| C6N24_RS28980 () | 41424..41819 | + | 396 | WP_062877216.1 | hypothetical protein | - |
| C6N24_RS28985 () | 41873..42127 | - | 255 | WP_062877215.1 | hypothetical protein | - |
| C6N24_RS28995 () | 42934..43263 | + | 330 | WP_106894652.1 | hypothetical protein | - |
| C6N24_RS29000 () | 43321..43632 | - | 312 | WP_106894653.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| C6N24_RS29005 () | 43864..44196 | + | 333 | WP_089611168.1 | nikA protein | - |
| C6N24_RS29010 () | 44208..46919 | + | 2712 | WP_106894654.1 | Protein TraI | Relaxase |
| C6N24_RS29015 () | 47077..47472 | + | 396 | WP_089611172.1 | tolA family protein | - |
| C6N24_RS30140 () | 47555..47716 | - | 162 | WP_172842241.1 | hypothetical protein | - |
| C6N24_RS29030 () | 48264..50567 | - | 2304 | WP_106894656.1 | TraM recognition domain-containing protein | - |
| C6N24_RS29035 () | 50548..51672 | - | 1125 | WP_106894657.1 | DsbC family protein | - |
| C6N24_RS29910 () | 51669..52994 | - | 1326 | WP_199852860.1 | IncI1-type conjugal transfer protein TrbA | - |
| C6N24_RS29915 () | 53332..53478 | + | 147 | WP_159032359.1 | hypothetical protein | - |
| C6N24_RS29045 () | 53772..54095 | - | 324 | WP_016232743.1 | hypothetical protein | - |
| C6N24_RS29050 () | 54129..54320 | - | 192 | WP_000264910.1 | hypothetical protein | - |
| C6N24_RS29055 () | 54330..54695 | - | 366 | WP_106894659.1 | hypothetical protein | - |
| C6N24_RS29075 () | 56716..57201 | - | 486 | WP_106894660.1 | thermonuclease family protein | - |
| C6N24_RS29080 () | 57362..57985 | + | 624 | WP_106894661.1 | DNA-binding protein | - |
| C6N24_RS29085 () | 58073..58528 | + | 456 | WP_106894662.1 | DUF2569 family protein | - |
| C6N24_RS29090 () | 58728..60263 | + | 1536 | WP_199852861.1 | phosphoethanolamine transferase | - |
| C6N24_RS29095 () | 60356..60598 | - | 243 | WP_106894664.1 | hypothetical protein | - |
| C6N24_RS29100 () | 60931..61083 | + | 153 | WP_059331012.1 | Hok/Gef family protein | - |
| C6N24_RS29110 () | 61172..61546 | - | 375 | WP_089610697.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| C6N24_RS29115 () | 61543..61746 | - | 204 | WP_089610695.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| C6N24_RS29120 () | 62190..62342 | + | 153 | WP_001367784.1 | Hok/Gef family protein | - |
| C6N24_RS29130 () | 62429..62917 | - | 489 | WP_106894665.1 | GNAT family N-acetyltransferase | - |
| C6N24_RS29135 () | 62923..63204 | - | 282 | WP_089610691.1 | DUF1778 domain-containing protein | - |
| C6N24_RS29140 () | 63361..64011 | - | 651 | WP_106894666.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C6N24_RS29145 () | 64099..66264 | - | 2166 | WP_106894667.1 | DotA/TraY family protein | - |
| C6N24_RS29150 () | 66337..66906 | - | 570 | WP_106894668.1 | conjugal transfer protein TraX | - |
| C6N24_RS29155 () | 66903..68108 | - | 1206 | WP_159032360.1 | conjugal transfer protein TraW | - |
| C6N24_RS29160 () | 68054..68686 | - | 633 | WP_106894669.1 | conjugal transfer protein TraV | - |
| C6N24_RS29165 () | 68686..71730 | - | 3045 | WP_106894670.1 | conjugal transfer protein | - |
| C6N24_RS29170 () | 71906..72160 | - | 255 | Protein_86 | hypothetical protein | - |
| C6N24_RS29175 () | 72245..73063 | - | 819 | WP_159032361.1 | conjugal transfer protein TraT | - |
| C6N24_RS29180 () | 72978..73229 | - | 252 | WP_106894671.1 | TraS | - |
| C6N24_RS29185 () | 73286..73684 | - | 399 | WP_089610677.1 | conjugal transfer protein TraR | - |
| C6N24_RS29190 () | 73731..74258 | - | 528 | WP_089610714.1 | conjugal transfer protein TraQ | - |
| C6N24_RS29195 () | 74258..74965 | - | 708 | WP_106894672.1 | conjugal transfer protein TraP | - |
| C6N24_RS29200 () | 74962..76293 | - | 1332 | WP_106894673.1 | conjugal transfer protein TraO | - |
| C6N24_RS29205 () | 76297..77271 | - | 975 | WP_097334714.1 | hypothetical protein | VF |
| C6N24_RS29210 () | 77282..77977 | - | 696 | WP_106894674.1 | DotI/IcmL family type IV secretion protein | - |
| C6N24_RS29215 () | 77989..78339 | - | 351 | WP_021532713.1 | hypothetical protein | - |
| C6N24_RS29220 () | 78356..82387 | - | 4032 | WP_106894675.1 | DNA primase | - |
| C6N24_RS29225 () | 82451..82741 | - | 291 | WP_089610664.1 | IcmT/TraK family protein | - |
| C6N24_RS29230 () | 82738..83886 | - | 1149 | WP_106894676.1 | putative protein YggR | VF |
| C6N24_RS29235 () | 83870..84706 | - | 837 | WP_106894677.1 | hypothetical protein | VF |
| C6N24_RS29240 () | 84703..85161 | - | 459 | Protein_100 | DotD/TraH family lipoprotein | - |
| C6N24_RS29245 () | 85266..86465 | - | 1200 | WP_106894678.1 | conjugal transfer protein TraF | - |
| C6N24_RS29250 () | 86551..87387 | - | 837 | WP_089610654.1 | conjugal transfer protein TraE | - |
| C6N24_RS29255 () | 87647..87967 | + | 321 | WP_106894679.1 | hypothetical protein | - |
| C6N24_RS29270 () | 88414..88695 | - | 282 | WP_106894680.1 | hypothetical protein | - |
| C6N24_RS29275 () | 88736..89905 | - | 1170 | WP_106894681.1 | site-specific integrase | - |
| C6N24_RS29280 () | 89960..90358 | + | 399 | WP_106894682.1 | phage tail protein | - |
| C6N24_RS29285 () | 90364..91605 | - | 1242 | WP_106894683.1 | hypothetical protein | VF |
| C6N24_RS29290 () | 91602..92252 | - | 651 | WP_106894684.1 | A24 family peptidase | - |
| C6N24_RS29295 () | 92269..92751 | - | 483 | WP_033806797.1 | hypothetical protein | VF |
| C6N24_RS29300 () | 92800..93336 | - | 537 | WP_089610646.1 | prepilin-type cleavage/methylation domain-containing protein | - |
| C6N24_RS29305 () | 93388..94488 | - | 1101 | WP_089610644.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| C6N24_RS29310 () | 94490..95998 | - | 1509 | WP_106894685.1 | Type II secretion system protein E | VF |
| C6N24_RS29315 () | 96095..96691 | - | 597 | WP_033804405.1 | hypothetical protein | - |
| C6N24_RS29320 () | 96780..97334 | - | 555 | WP_089610638.1 | hypothetical protein | - |
| C6N24_RS29325 () | 97383..97835 | - | 453 | WP_033806465.1 | hypothetical protein | VF |
| C6N24_RS29330 () | 97825..99120 | - | 1296 | WP_106894686.1 | type 4b pilus protein PilO2 | - |
| C6N24_RS29335 () | 99141..100760 | - | 1620 | WP_062859202.1 | Outer membrane lipoprotein BfpB | VF |
| C6N24_RS29340 () | 100791..101228 | - | 438 | WP_033804489.1 | type IV pilus biogenesis protein PilM | - |
| C6N24_RS29345 () | 101233..102303 | - | 1071 | WP_106894687.1 | hypothetical protein | VF |
| C6N24_RS29350 () | 102423..102848 | + | 426 | WP_106894688.1 | hypothetical protein | - |
| C6N24_RS29355 () | 102841..103728 | - | 888 | WP_106894689.1 | hypothetical protein | - |
| C6N24_RS29365 () | 104236..104583 | - | 348 | WP_001681787.1 | hypothetical protein | - |
| C6N24_RS29370 () | 104700..105017 | - | 318 | WP_106894691.1 | PilI type IV pilus biogenesis protein | - |
| C6N24_RS29375 () | 105023..106717 | - | 1695 | WP_106894692.1 | flotillin family protein | - |
| C6N24_RS29380 () | 106744..107364 | - | 621 | WP_106894693.1 | DUF1449 family protein | - |
| C6N24_RS29390 () | 107629..108294 | - | 666 | WP_106894711.1 | traC | - |
| C6N24_RS29395 () | 108434..109075 | - | 642 | WP_089611238.1 | transcription termination factor NusG | - |
| C6N24_RS29405 () | 109777..110649 | + | 873 | WP_199852859.1 | incFII family plasmid replication initiator RepA | - |
| C6N24_RS29425 () | 111644..111907 | + | 264 | WP_106894697.1 | plasmid stabilization protein | - |
| C6N24_RS29430 () | 111897..112196 | + | 300 | WP_106894698.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C6N24_RS29435 () | 112742..112996 | + | 255 | WP_000108831.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| C6N24_RS29440 () | 112986..113276 | + | 291 | WP_106894699.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6N24_RS29445 () | 113380..113973 | + | 594 | WP_106894700.1 | Serine acetyltransferase | VF |
| C6N24_RS29450 () | 114073..114690 | + | 618 | WP_106894701.1 | hypothetical protein | - |
| C6N24_RS29455 () | 114715..115008 | + | 294 | WP_106894702.1 | hypothetical protein | - |
| C6N24_RS29460 () | 115192..116348 | + | 1157 | WP_089611701.1 | IS3 family transposase ISSd1 | Transposase |
| C6N24_RS29470 () | 116684..117550 | + | 867 | WP_106894703.1 | radical SAM protein | - |
| C6N24_RS29475 () | 117547..118275 | + | 729 | WP_106894704.1 | deoxynucleoside kinase | - |
| C6N24_RS29480 () | 118257..118694 | + | 438 | WP_106894705.1 | nucleoside triphosphatase NudI | - |
| C6N24_RS29485 () | 119767..121491 | - | 1725 | WP_044804912.1 | ATM1-type heavy metal exporter | VF |
| C6N24_RS29490 () | 121491..122174 | - | 684 | WP_000200414.1 | lasso peptide biosynthesis B2 protein | - |
| C6N24_RS29495 () | 122174..123562 | - | 1389 | WP_044804914.1 | hypothetical protein | - |
| C6N24_RS29500 () | 123690..123878 | - | 189 | WP_000744815.1 | hypothetical protein | - |
| C6N24_RS29505 () | 124090..124516 | + | 427 | Protein_144 | hypothetical protein | - |
| C6N24_RS29510 () | 124534..124893 | - | 360 | WP_106894706.1 | colicin transporter | - |
| C6N24_RS29515 () | 124901..125674 | - | 774 | Protein_146 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|