NZ_CP0271301..170292

MGE detailed information

MGE type: Conjugative plasmid        MGE length: 170292 bp
Accession: NZ_CP027130        Location: 1..170292         Organism: Escherichia coli strain AR_0372       Replicon: plasmid unnamed1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CSC09_RS00065 () 1902..2693 + 792 WP_000977394.1 DUF4198 domain-containing protein -
CSC09_RS00070 () 2756..3364 - 609 Protein_2 IS66 family transposase ISEc22 Transposase
CSC09_RS00075 () 3432..4214 - 783 WP_001317493.1 IS21 family transposase IS100kyp Transposase
CSC09_RS00080 () 4211..5233 - 1023 WP_000255956.1 IS21 family transposase IS100kyp Transposase
CSC09_RS00090 () 5319..6264 - 946 Protein_5 IS66 family transposase ISEc8 Transposase
CSC09_RS00095 () 6313..6687 - 375 WP_024193849.1 IS66 family insertion sequence element accessory protein TnpB -
CSC09_RS00100 () 6712..7416 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
CSC09_RS00105 () 7469..7948 + 480 Protein_8 Tn3 family transposase TnpR_ISSba14 Transposase
CSC09_RS00110 () 8133..8690 + 558 WP_000108589.1 OsmC family protein -
CSC09_RS00115 () 8832..9413 + 582 WP_000210409.1 HTH-type transcriptional repressor NemR VF
CSC09_RS00120 () 9418..9756 + 339 WP_000888080.1 carboxymuconolactone decarboxylase family protein -
CSC09_RS00125 () 9786..10115 - 330 WP_002431133.1 thioredoxin family protein -
CSC09_RS00130 () 10329..11435 + 1107 WP_000039982.1 alkene reductase -
CSC09_RS00135 () 11501..12202 + 702 WP_001194013.1 DsbA family oxidoreductase -
CSC09_RS00140 () 12268..13041 + 774 WP_032152933.1 SDR family oxidoreductase -
CSC09_RS00145 () 13227..14450 - 1224 WP_000872613.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
CSC09_RS00150 () 14581..15453 - 873 WP_000090196.1 DMT family transporter -
CSC09_RS00155 () 15695..16447 + 753 WP_000734115.1 alpha/beta hydrolase -
CSC09_RS00160 () 16474..16787 + 314 Protein_19 Tn3 family transposase -
CSC09_RS00165 () 16887..17891 + 1005 WP_021546935.1 IS110 family transposase IS4321R Transposase
CSC09_RS00170 () 18169..18273 + 105 Protein_21 IS5/IS1182 family transposase -
CSC09_RS00175 () 18423..19055 - 633 Protein_22 histidine-type phosphatase -
CSC09_RS00180 () 19177..19662 - 486 WP_000874189.1 hypothetical protein -
CSC09_RS00185 () 19687..20172 - 486 WP_001267176.1 TlpA family protein disulfide reductase -
CSC09_RS00190 () 20159..20854 - 696 WP_000117262.1 Lipoprotein-releasing system ATP-binding protein LolD VF
CSC09_RS00195 () 20859..21989 - 1131 WP_000729219.1 ABC transporter permease -
CSC09_RS00200 () 21979..23262 - 1284 WP_000964653.1 ABC transporter permease -
CSC09_RS00205 () 23265..24644 - 1380 WP_000119836.1 DUF2318 domain-containing protein -
CSC09_RS00210 () 24748..25275 - 528 WP_000178050.1 iron transporter -
CSC09_RS00215 () 25316..27202 - 1887 WP_000118029.1 FTR1 family iron permease -
CSC09_RS00225 () 27549..28364 - 816 WP_012372823.1 Na(+)-translocating NADH-quinone reductase subunit C -
CSC09_RS00230 () 28547..29053 - 507 WP_000949452.1 protein disulfide oxidoreductase -
CSC09_RS00235 () 29043..29201 - 159 WP_000449408.1 DsbA family protein -
CSC09_RS29345 () 29351..29464 - 114 Protein_34 IS6 family transposase -
CSC09_RS00250 () 29664..30361 + 698 Protein_35 IS1 family transposase IS1X2 Transposase
CSC09_RS00255 () 30376..31539 + 1164 Protein_36 IS4 family transposase IS10R Transposase
CSC09_RS00260 () 31549..31920 - 372 WP_035689358.1 Transposon Tn10 TetD protein VF
CSC09_RS00265 () 32053..32646 + 594 WP_000428546.1 tetracyline resistance-associated transcriptional repressor TetC -
CSC09_RS00270 () 32759..33964 - 1206 WP_001089068.1 Tetracycline resistance protein, class B ARG
CSC09_RS00275 () 34046..34669 + 624 WP_000088605.1 Tetracycline repressor protein class B from transposon Tn10 VF
CSC09_RS00280 () 34647..35333 - 687 WP_001284954.1 winged helix-turn-helix domain-containing protein -
CSC09_RS00285 () 35341..35727 - 387 WP_000460651.1 hypothetical protein -
CSC09_RS00290 () 35720..35983 - 264 WP_049802299.1 antibiotic biosynthesis monooxygenase -
CSC09_RS00295 () 35980..36677 - 698 Protein_44 IS1 family transposase IS1R Transposase
CSC09_RS00305 () 36866..37570 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
CSC09_RS00310 () 37622..38131 + 510 Protein_46 IS6-like element IS6100 family transposase -
CSC09_RS00325 () 38624..39208 - 585 WP_001137892.1 TetR family transcriptional regulator -
CSC09_RS00330 () 39208..40446 - 1239 WP_000004159.1 MFS transporter -
CSC09_RS00335 () 40443..41348 - 906 WP_000219391.1 hypothetical protein ARG
CSC09_RS00345 () 41470..42174 - 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
CSC09_RS00355 () 42515..42718 - 204 WP_064765192.1 hypothetical protein -
CSC09_RS00365 () 42915..43754 - 840 WP_000259031.1 Dihydropteroate synthase ARG
CSC09_RS00370 () 43748..44095 - 348 WP_000679427.1 Multidrug transporter EmrE ARG
CSC09_RS00375 () 44301..45089 - 789 WP_000503573.1 Streptomycin 3''-adenylyltransferase ARG
CSC09_RS00380 () 45220..45693 - 474 WP_001389366.1 trimethoprim-resistant dihydrofolate reductase DfrA17 -
CSC09_RS00385 () 45851..46864 + 1014 WP_000845048.1 IS91 family transposase ISAzo26 Transposase
CSC09_RS29145 () 47067..47357 + 291 WP_032152941.1 DUF3330 domain-containing protein -
CSC09_RS00395 () 47394..48098 + 705 WP_001067858.1 IS6 family transposase IS15DI Transposase
CSC09_RS00400 () 48152..49120 + 969 Protein_59 IS1380 family transposase ISEcp1 Transposase
CSC09_RS00405 () 49376..50251 + 876 WP_000239590.1 Beta-lactamase CTX-M-1 ARG
CSC09_RS00410 () 50298..50630 - 333 WP_001393253.1 WbuC family cupin fold metalloprotein -
CSC09_RS00415 () 50644..52887 + 2244 Protein_62 Tn3 family transposase TnpA_Tn3 Transposase
CSC09_RS00420 () 52952..53656 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
CSC09_RS00425 () 53710..54758 - 1049 Protein_64 IS3 family transposase ISKpn11 Transposase
CSC09_RS00430 () 54850..55392 - 543 WP_002063889.1 AAA family ATPase -
CSC09_RS00435 () 55405..56265 - 861 WP_000557452.1 SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD ARG
CSC09_RS00440 () 56372..57076 + 705 WP_001067855.1 IS6 family transposase IS26 Transposase
CSC09_RS00445 () 57130..57570 - 441 Protein_68 CatB-related O-acetyltransferase -
CSC09_RS00450 () 57708..58538 - 831 WP_001334766.1 Beta-lactamase OXA-1 ARG
CSC09_RS00455 () 58669..59223 - 555 WP_063840321.1 Aminoglycoside N(6')-acetyltransferase type 1 ARG
CSC09_RS00460 () 59367..60071 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
CSC09_RS00465 () 60137..60649 + 513 Protein_72 Tn3 family transposase TnpA_TnAs1 Transposase
CSC09_RS00470 () 60673..61278 - 606 WP_000509965.1 Tn3 family transposase TnpR_Tn5403 Transposase
CSC09_RS00475 () 61373..64270 + 2898 WP_001553819.1 Tn3 family transposase TnpA_Tn5403 Transposase
CSC09_RS00485 () 64407..64808 - 402 WP_001398199.1 type II toxin-antitoxin system toxin endoribonuclease PemK -
CSC09_RS28685 () 64741..64998 - 258 WP_000557619.1 type II toxin-antitoxin system antitoxin PemI -
CSC09_RS00490 () 65091..65744 - 654 WP_000616807.1 CPBP family intramembrane metalloprotease -
CSC09_RS29150 () 65842..65982 - 141 WP_001333237.1 hypothetical protein -
CSC09_RS00500 () 66683..67540 - 858 WP_032152935.1 incFII family plasmid replication initiator RepA -
CSC09_RS00505 () 67533..67607 - 75 WP_001365705.1 RepA leader peptide Tap -
CSC09_RS00515 () 67842..68099 - 258 WP_000083821.1 replication regulatory protein RepA -
CSC09_RS00520 () 68504..69526 + 1023 WP_000156883.1 IS110 family transposase ISSm1 Transposase
CSC09_RS00525 () 69998..70351 + 354 WP_000005489.1 hypothetical protein -
CSC09_RS00530 () 70764..71342 - 579 WP_032152936.1 DUF2726 domain-containing protein -
CSC09_RS00540 () 71375..72072 + 698 Protein_85 IS1 family transposase IS1S Transposase
CSC09_RS00545 () 72181..72543 + 363 WP_059330006.1 IS66 family transposase ISEc23 Transposase
CSC09_RS00550 () 72540..72890 + 351 WP_000624725.1 IS66 family transposase ISEc47 Transposase
CSC09_RS00555 () 72921..73142 + 222 WP_000080227.1 IS66 family transposase ISEc43 Transposase
CSC09_RS00560 () 73094..73435 + 342 Protein_89 transposase -
CSC09_RS00565 () 73499..73978 - 480 WP_001496175.1 ArgR family transcriptional regulator -
CSC09_RS00570 () 74059..75462 - 1404 WP_000514417.1 YfcC family protein -
CSC09_RS00575 () 75510..76514 - 1005 WP_000154545.1 Ornithine carbamoyltransferase VF
CSC09_RS00580 () 76599..77510 - 912 WP_000440183.1 carbamate kinase -
CSC09_RS00585 () 77521..78741 - 1221 WP_000410951.1 arginine deiminase -
CSC09_RS00590 () 79634..80116 + 483 Protein_95 VENN motif pre-toxin domain-containing protein -
CSC09_RS00595 () 80062..80508 - 447 Protein_96 incFII family plasmid replication initiator RepA -
CSC09_RS00600 () 80501..80575 - 75 WP_032336874.1 RepA leader peptide Tap -
CSC09_RS00610 () 80811..81068 - 258 WP_000083833.1 replication regulatory protein RepA -
CSC09_RS00615 () 81352..81558 - 207 WP_015387399.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
- () 81545..81606 + 62 NuclAT_2 - Antitoxin Detail
- () 81545..81606 + 62 NuclAT_2 - Antitoxin Detail
- () 81545..81606 + 62 NuclAT_2 - Antitoxin Detail
- () 81545..81606 + 62 NuclAT_2 - Antitoxin Detail
CSC09_RS00625 () 81745..81927 - 183 WP_000968309.1 hypothetical protein -
CSC09_RS00635 () 82028..82644 + 617 Protein_101 IS1 family transposase IS1G Transposase
CSC09_RS00640 () 82682..84253 - 1572 WP_023149734.1 IS66 family transposase ISCro1 Transposase
CSC09_RS00645 () 84273..84620 - 348 WP_000624622.1 IS66 family transposase ISCro1 Transposase
CSC09_RS00650 () 84620..85297 - 678 WP_001339397.1 IS66 family transposase ISCro1 Transposase
CSC09_RS29350 () 85352..85441 + 90 Protein_105 IS1 family transposase -
CSC09_RS00665 () 85742..85954 - 213 WP_005012601.1 hypothetical protein -
CSC09_RS00670 () 86088..86648 - 561 WP_000139363.1 fertility inhibition protein FinO -
CSC09_RS00675 () 86703..87449 - 747 WP_023149624.1 conjugal transfer pilus acetylase TraX -
CSC09_RS00680 () 87469..92589 - 5121 WP_013362805.1 Multifunctional conjugation protein TraI Relaxase
CSC09_RS00685 () 92589..94778 - 2190 WP_040110343.1 type IV conjugative transfer system coupling protein TraD -
CSC09_RS00690 () 95030..95761 - 732 WP_000850424.1 complement resistance protein TraT -
CSC09_RS00695 () 95775..96284 - 510 WP_000628100.1 conjugal transfer entry exclusion protein TraS -
CSC09_RS00700 () 96281..99106 - 2826 WP_001553826.1 conjugal transfer mating pair stabilization protein TraG -
CSC09_RS00705 () 99103..100476 - 1374 WP_021518370.1 conjugal transfer protein TraH -
CSC09_RS00710 () 100463..100855 - 393 WP_000164675.1 F-type conjugal transfer protein TrbF -
CSC09_RS00715 () 100809..101183 - 375 WP_071788165.1 P-type conjugative transfer protein TrbJ -
CSC09_RS00720 () 101113..101667 - 555 WP_001553830.1 type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB -
CSC09_RS00725 () 101654..101938 - 285 WP_000624105.1 type-F conjugative transfer system pilin chaperone TraQ -
CSC09_RS00730 () 102019..102354 + 336 WP_000415571.1 hypothetical protein -
CSC09_RS00735 () 102335..102676 - 342 WP_000556794.1 conjugal transfer protein TrbA -
CSC09_RS00740 () 102690..103433 - 744 WP_001030378.1 type-F conjugative transfer system pilin assembly protein TraF -
CSC09_RS00745 () 103426..103683 - 258 WP_000864312.1 conjugal transfer protein TrbE -
CSC09_RS00750 () 103710..105518 - 1809 WP_000821840.1 type-F conjugative transfer system mating-pair stabilization protein TraN -
CSC09_RS00755 () 105515..106153 - 639 WP_021518374.1 type-F conjugative transfer system pilin assembly protein TrbC -
CSC09_RS00760 () 106162..107154 - 993 WP_000830180.1 conjugal transfer pilus assembly protein TraU -
CSC09_RS00765 () 107151..107783 - 633 WP_001203720.1 type-F conjugative transfer system protein TraW -
CSC09_RS00770 () 107780..108166 - 387 WP_000099686.1 type-F conjugative transfer system protein TrbI -
CSC09_RS00775 () 108163..110790 - 2628 WP_001064245.1 type IV secretion system protein TraC -
CSC09_RS00780 () 110950..111171 - 222 WP_001278689.1 conjugal transfer protein TraR -
CSC09_RS00785 () 111306..111821 - 516 WP_000809838.1 type IV conjugative transfer system lipoprotein TraV -
CSC09_RS00790 () 111818..112069 - 252 WP_001038342.1 conjugal transfer protein TrbG -
CSC09_RS00795 () 112081..112311 - 231 WP_001352845.1 conjugal transfer protein TrbD -
CSC09_RS00800 () 112265..112855 - 591 WP_000002787.1 conjugal transfer protein TraP -
CSC09_RS00805 () 112845..114272 - 1428 WP_000146685.1 conjugal transfer protein TraB -
CSC09_RS00810 () 114272..114976 - 705 WP_072095570.1 type-F conjugative transfer system secretin TraK -
CSC09_RS00815 () 114987..115553 - 567 WP_021514868.1 type IV conjugative transfer system protein TraE -
CSC09_RS00820 () 115575..115886 - 312 WP_000012106.1 type IV conjugative transfer system protein TraL -
CSC09_RS00825 () 115901..116266 - 366 WP_000994779.1 type IV conjugative transfer system pilin TraA -
CSC09_RS00830 () 116299..116694 - 396 WP_001309237.1 conjugal transfer relaxosome protein TraY -
CSC09_RS00835 () 116793..117482 - 690 WP_000283385.1 conjugal transfer transcriptional regulator TraJ -
CSC09_RS00840 () 117669..118052 - 384 WP_001151524.1 relaxosome protein TraM -
CSC09_RS00845 () 118373..118975 + 603 WP_013362798.1 hypothetical protein VF
CSC09_RS00850 () 119272..120093 - 822 WP_001234426.1 DUF945 domain-containing protein -
CSC09_RS00855 () 120211..120498 - 288 WP_000107535.1 hypothetical protein -
CSC09_RS00870 () 121419..121577 - 159 WP_001312861.1 type I toxin-antitoxin system Hok family toxin Toxin Detail
- () 121621..121652 - 32 NuclAT_1 - Antitoxin Detail
- () 121621..121652 - 32 NuclAT_1 - Antitoxin Detail
- () 121621..121652 - 32 NuclAT_1 - Antitoxin Detail
- () 121621..121652 - 32 NuclAT_1 - Antitoxin Detail
- () 123094..123291 - 198 NuclAT_0 - -
- () 123094..123291 - 198 NuclAT_0 - -
- () 123094..123291 - 198 NuclAT_0 - -
- () 123094..123291 - 198 NuclAT_0 - -
CSC09_RS29155 () 123103..123291 + 189 WP_001299721.1 hypothetical protein -
CSC09_RS00880 () 123303..124022 - 720 WP_001276238.1 plasmid SOS inhibition protein A -
CSC09_RS00885 () 124019..124453 - 435 WP_000845937.1 conjugation system SOS inhibitor PsiB -
CSC09_RS00890 () 124508..124705 - 198 Protein_150 hypothetical protein -
CSC09_RS00895 () 124733..124966 - 234 WP_000005990.1 DUF905 family protein -
CSC09_RS00900 () 125034..125573 - 540 WP_000290840.1 single-stranded DNA-binding protein -
CSC09_RS29355 () 125599..125805 - 207 WP_000275856.1 hypothetical protein -
CSC09_RS00915 () 126215..126421 - 207 WP_001774176.1 hypothetical protein -
CSC09_RS00920 () 126447..127012 - 566 Protein_155 class I SAM-dependent methyltransferase -
CSC09_RS00925 () 127060..128421 - 1362 WP_000199439.1 DUF3560 domain-containing protein -
CSC09_RS00930 () 128473..128703 - 231 WP_000218642.1 hypothetical protein -
CSC09_RS29160 () 129215..129463 + 249 WP_071781657.1 hypothetical protein -
CSC09_RS00945 () 129735..129926 - 192 WP_001027495.1 hypothetical protein -
CSC09_RS00950 () 129923..130345 - 423 WP_000271685.1 DUF1380 family protein -
CSC09_RS00955 () 130392..130694 - 303 WP_001666994.1 antirestriction protein -
CSC09_RS28725 () 131231..132001 - 771 WP_001006251.1 hypothetical protein -
CSC09_RS00970 () 132046..132480 - 435 WP_001546462.1 DUF1380 family protein -
CSC09_RS00975 () 132494..132715 - 222 WP_001104873.1 hypothetical protein -
CSC09_RS00980 () 132716..133399 - 684 WP_032181561.1 DNA methylase -
CSC09_RS00985 () 133476..133780 - 305 Protein_166 hypothetical protein -
CSC09_RS00990 () 133784..134686 - 903 WP_064766247.1 DUF1281 domain-containing protein -
CSC09_RS01000 () 135424..136395 - 972 WP_000817031.1 ParB/RepB/Spo0J family plasmid partition protein -
CSC09_RS01005 () 136395..137561 - 1167 WP_000772446.1 Sporulation initiation inhibitor protein Soj VF
CSC09_RS01010 () 138149..138904 - 756 WP_000852146.1 replication initiation protein RepE -
CSC09_RS01015 () 139626..140432 - 807 WP_000016970.1 site-specific integrase -
CSC09_RS01020 () 140433..140738 - 306 WP_001159871.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
CSC09_RS01025 () 140740..140958 - 219 WP_000813630.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
CSC09_RS01035 () 141518..141748 + 231 WP_001261286.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin Detail
CSC09_RS01040 () 141745..142161 + 417 WP_001034044.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
CSC09_RS01045 () 142236..143801 + 1566 WP_001128474.1 AAA family ATPase -
CSC09_RS01050 () 143786..144808 + 1023 WP_000361402.1 helicase UvrD -
CSC09_RS01060 () 145062..145748 - 687 Protein_178 IS1 family transposase IS1S Transposase
CSC09_RS01075 () 146274..148475 - 2202 WP_000973519.1 Ferric aerobactin receptor VF
CSC09_RS01080 () 148557..149834 - 1278 WP_000750130.1 L-lysine N6-monooxygenase VF
CSC09_RS01085 () 149831..151573 - 1743 WP_001015721.1 Aerobactin synthase VF
CSC09_RS01090 () 151573..152520 - 948 WP_000011908.1 N(6)-hydroxylysine O-acetyltransferase VF
CSC09_RS01095 () 152521..154245 - 1725 WP_000602863.1 N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase VF
CSC09_RS01100 () 154381..155574 + 1194 WP_000095526.1 MFS transporter -
CSC09_RS01105 () 155954..156334 - 381 WP_001318207.1 fluoride efflux transporter CrcB -
CSC09_RS01115 () 156675..157088 - 414 Protein_186 phosphopyruvate hydratase -
CSC09_RS01120 () 157086..157343 + 258 Protein_187 Tn3 family transposase -
CSC09_RS01125 () 157577..158434 - 858 WP_000968139.1 Manganese transport system membrane protein MntB ARG
CSC09_RS01130 () 158431..159288 - 858 WP_001101723.1 Manganese transport system membrane protein MntB ARG
CSC09_RS01135 () 159285..160112 - 828 WP_000983710.1 Iron(3+)-hydroxamate import ATP-binding protein FhuC VF
CSC09_RS01140 () 160112..161026 - 915 WP_000949005.1 Putative metal ABC transporter substrate-binding protein Hpf VF
CSC09_RS01155 () 161382..162079 + 698 Protein_192 IS1 family transposase IS1G Transposase
CSC09_RS01160 () 162259..162772 - 514 Protein_193 DUF4113 domain-containing protein -
CSC09_RS29360 () 162833..162937 - 105 Protein_194 AAA family ATPase -
CSC09_RS01170 () 162939..163262 - 324 Protein_195 IS21 family transposase IS21 Transposase
CSC09_RS01180 () 164008..164985 + 978 WP_000361611.1 RepB family plasmid replication initiator protein -
CSC09_RS01185 () 165270..166010 - 741 WP_001066953.1 tyrosine-type recombinase/integrase -
CSC09_RS01190 () 166131..166319 - 189 WP_001309252.1 hypothetical protein -
CSC09_RS01195 () 166686..167855 + 1170 WP_001072358.1 hypothetical protein -
CSC09_RS01200 () 168081..168256 - 176 Protein_200 IS3 family transposase -
CSC09_RS01205 () 168702..168974 - 273 WP_001322642.1 Major pilu subunit operon regulatory protein PapB VF
CSC09_RS01210 () 169499..169935 - 437 Protein_202 IS3 family transposase IS2 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance