MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 122029 bp
Accession: NZ_CP026813 Location: 1..122029 Organism: Shigella boydii strain 83-578 Replicon: plasmid unnamed
Accession: NZ_CP026813 Location: 1..122029 Organism: Shigella boydii strain 83-578 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P60_RS00005 () | 2..367 | + | 366 | WP_073691780.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| C1P60_RS00010 () | 413..1257 | + | 845 | Protein_1 | IS5 family transposase ISSfl7 | Transposase |
| C1P60_RS00015 () | 1429..2178 | - | 750 | WP_000828661.1 | phosphatase PAP2 family protein | - |
| C1P60_RS00025 () | 2541..2756 | + | 216 | Protein_3 | IS3 family transposase IS600 | Transposase |
| C1P60_RS25435 () | 3039..3482 | + | 444 | WP_201797260.1 | hypothetical protein | - |
| C1P60_RS00035 () | 3534..4747 | + | 1214 | WP_167692677.1 | IS3 family transposase IS629 | Transposase |
| C1P60_RS00040 () | 4823..5095 | - | 273 | WP_012421738.1 | hypothetical protein | - |
| C1P60_RS00050 () | 5688..5906 | + | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| C1P60_RS00055 () | 5908..6213 | + | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| C1P60_RS00060 () | 6249..6344 | + | 96 | Protein_9 | transposase domain-containing protein | - |
| C1P60_RS00065 () | 6606..8243 | + | 1638 | WP_012421769.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| C1P60_RS00070 () | 8451..8720 | + | 270 | WP_000079956.1 | hypothetical protein | - |
| C1P60_RS25440 () | 8717..8943 | + | 227 | Protein_12 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1P60_RS00080 () | 8972..9457 | + | 486 | WP_039058926.1 | Protein kinase OspG | VF |
| C1P60_RS00085 () | 9472..10169 | - | 698 | Protein_14 | IS1 family transposase IS1X2 | Transposase |
| C1P60_RS25195 () | 10339..10491 | + | 153 | WP_171765824.1 | hypothetical protein | - |
| C1P60_RS00090 () | 10855..11697 | + | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| C1P60_RS00095 () | 11700..12788 | + | 1089 | WP_005027207.1 | putative hexosyltransferase CapU | - |
| C1P60_RS00100 () | 12793..13743 | + | 951 | WP_012421771.1 | virulence factor VirK | - |
| C1P60_RS00105 () | 13808..14752 | + | 945 | WP_012421740.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| C1P60_RS00110 () | 14907..15578 | - | 672 | Protein_20 | IS630 family transposase IS630 | Transposase |
| C1P60_RS00115 () | 15594..16291 | - | 698 | Protein_21 | IS1 family transposase IS1X2 | Transposase |
| C1P60_RS00125 () | 16539..18727 | + | 2189 | Protein_22 | type IV conjugative transfer system coupling protein TraD | - |
| C1P60_RS00130 () | 18736..19134 | - | 399 | WP_000911319.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C1P60_RS00135 () | 19134..19361 | - | 228 | WP_000450530.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C1P60_RS00140 () | 19565..19858 | + | 294 | WP_171548087.1 | relaxase domain-containing protein | - |
| C1P60_RS00145 () | 19845..24716 | + | 4872 | WP_039058931.1 | Multifunctional conjugation protein TraI | Relaxase |
| C1P60_RS00150 () | 24736..25482 | + | 747 | WP_000205722.1 | conjugal transfer pilus acetylase TraX | - |
| C1P60_RS00155 () | 25537..26097 | + | 561 | WP_005056178.1 | fertility inhibition protein FinO | - |
| C1P60_RS00160 () | 26228..26440 | + | 213 | WP_011379083.1 | ANR family transcriptional regulator | - |
| C1P60_RS00170 () | 26684..27124 | + | 441 | WP_001233864.1 | thermonuclease family protein | - |
| C1P60_RS00175 () | 27191..27397 | + | 207 | WP_012421743.1 | hemolysin expression modulator Hha | - |
| C1P60_RS00180 () | 27408..28105 | - | 698 | Protein_32 | IS1 family transposase IS1R | Transposase |
| C1P60_RS00185 () | 28216..28806 | + | 591 | WP_000766818.1 | DUF2726 domain-containing protein | - |
| C1P60_RS00190 () | 29046..29306 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| C1P60_RS00200 () | 29530..29604 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| C1P60_RS00205 () | 29597..30454 | + | 858 | WP_000130973.1 | incFII family plasmid replication initiator RepA | - |
| C1P60_RS00220 () | 31438..31761 | - | 324 | Protein_37 | IS110 family transposase IS1663 | Transposase |
| C1P60_RS00225 () | 31933..33132 | - | 1200 | WP_134796874.1 | IS91 family transposase ISSbo1 | Transposase |
| C1P60_RS25200 () | 33142..33330 | - | 189 | WP_000957863.1 | hypothetical protein | - |
| C1P60_RS00235 () | 33438..33692 | - | 255 | Protein_40 | IS3 family transposase IS1203 | Transposase |
| C1P60_RS00240 () | 33747..34028 | + | 282 | Protein_41 | transposase domain-containing protein | - |
| C1P60_RS00250 () | 35542..36996 | + | 1455 | WP_000701110.1 | hypothetical protein | VF |
| C1P60_RS25055 () | 37145..37273 | - | 129 | Protein_44 | IS5 family transposase ISSfl7 | Transposase |
| C1P60_RS00265 () | 37445..38539 | - | 1095 | Protein_45 | IS91 family transposase | - |
| C1P60_RS00270 () | 38591..39804 | + | 1214 | WP_136952279.1 | IS3 family transposase IS629 | Transposase |
| C1P60_RS00275 () | 39947..40219 | - | 273 | WP_000019158.1 | hypothetical protein | - |
| C1P60_RS00285 () | 40491..40793 | + | 303 | WP_010921625.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| C1P60_RS00290 () | 40784..41266 | + | 483 | WP_000405248.1 | GNAT family N-acetyltransferase | Toxin Detail |
| C1P60_RS00300 () | 41435..42511 | + | 1077 | Protein_50 | IS3 family transposase IS911 | Transposase |
| C1P60_RS00305 () | 42535..43227 | - | 693 | WP_000625263.1 | hypothetical protein | VF |
| C1P60_RS00310 () | 43283..43435 | + | 153 | Protein_52 | IS3 family transposase | - |
| C1P60_RS00320 () | 44816..45763 | + | 948 | WP_005005342.1 | Outer membrane protease IcsP | VF |
| C1P60_RS00330 () | 46095..47251 | + | 1157 | WP_094106539.1 | IS3 family transposase IS600 | Transposase |
| C1P60_RS00340 () | 48930..49049 | + | 120 | Protein_56 | DUF3440 domain-containing protein | - |
| C1P60_RS00345 () | 49299..50165 | + | 867 | WP_001046939.1 | hypothetical protein | VF |
| C1P60_RS00350 () | 50494..51234 | + | 741 | WP_000850663.1 | PAP2 family phosphatase PhoN2 | - |
| C1P60_RS00360 () | 51587..51767 | - | 181 | Protein_59 | hypothetical protein | VF |
| C1P60_RS00365 () | 51773..52469 | - | 697 | Protein_60 | IS1 family transposase | - |
| C1P60_RS00370 () | 52561..53785 | - | 1225 | Protein_61 | IS3 family transposase IS2 | Transposase |
| C1P60_RS00375 () | 53984..54681 | + | 698 | Protein_62 | IS1 family transposase IS1R | Transposase |
| C1P60_RS00380 () | 54804..55322 | - | 519 | Protein_63 | IS66 family transposase IS679 | Transposase |
| C1P60_RS00385 () | 55339..56024 | - | 686 | Protein_64 | IS3 family transposase ISSfl11 | Transposase |
| C1P60_RS00390 () | 56435..56632 | + | 198 | WP_005008498.1 | hypothetical protein | - |
| C1P60_RS00395 () | 56714..58423 | - | 1710 | WP_012421777.1 | hypothetical protein | VF |
| C1P60_RS00400 () | 58855..59574 | - | 720 | WP_001121865.1 | Phosphothreonine lyase OspF | VF |
| C1P60_RS00405 () | 59699..60262 | - | 564 | Protein_68 | ISL3 family transposase ISKox3 | Transposase |
| C1P60_RS00410 () | 60246..60504 | + | 259 | Protein_69 | IS1 family transposase | - |
| C1P60_RS00415 () | 60613..61191 | - | 579 | WP_000868561.1 | hypothetical protein | - |
| C1P60_RS00420 () | 61612..61849 | - | 238 | Protein_71 | IS21 family transposase IS21 | Transposase |
| C1P60_RS00425 () | 62036..62465 | - | 430 | Protein_72 | IS91 family transposase ISEc37 | Transposase |
| C1P60_RS00430 () | 62513..62698 | - | 186 | WP_005008511.1 | hypothetical protein | - |
| C1P60_RS25205 () | 62861..63142 | + | 282 | Protein_74 | IS66 family transposase ISCro1 | Transposase |
| C1P60_RS00440 () | 63156..64502 | - | 1347 | WP_000483764.1 | IS4 family transposase IS4 | Transposase |
| C1P60_RS00445 () | 64569..64946 | + | 378 | Protein_76 | IS66 family transposase ISCro1 | Transposase |
| C1P60_RS00450 () | 64946..65293 | + | 348 | WP_000622995.1 | IS66 family transposase ISCro1 | Transposase |
| C1P60_RS00455 () | 65313..66467 | + | 1155 | Protein_78 | IS66 family transposase ISCro1 | Transposase |
| C1P60_RS00460 () | 66471..66630 | + | 160 | Protein_79 | IS3 family transposase IS3F | Transposase |
| C1P60_RS00465 () | 67219..67517 | + | 299 | Protein_80 | transposase | - |
| C1P60_RS00470 () | 67599..67736 | + | 138 | Protein_81 | IS630 family transposase | - |
| C1P60_RS00475 () | 68106..68783 | + | 678 | WP_000026472.1 | hypothetical protein | VF |
| C1P60_RS25065 () | 69107..69217 | + | 111 | Protein_83 | IS3 family transposase | - |
| C1P60_RS25210 () | 69295..69609 | + | 315 | WP_011114726.1 | hypothetical protein | - |
| C1P60_RS00495 () | 69891..70457 | + | 567 | WP_005057975.1 | hypothetical protein | VF |
| C1P60_RS25445 () | 70719..70841 | - | 123 | Protein_86 | transposase domain-containing protein | - |
| C1P60_RS00505 () | 70984..71538 | + | 555 | Protein_87 | IS3 family transposase IS3H | Transposase |
| C1P60_RS00510 () | 71878..72116 | + | 239 | Protein_88 | IS1 family transposase | - |
| C1P60_RS00515 () | 72130..72827 | - | 698 | Protein_89 | IS1 family transposase IS1R | Transposase |
| C1P60_RS00520 () | 72868..73014 | + | 147 | Protein_90 | IS1 family transposase | - |
| C1P60_RS00530 () | 73101..74123 | + | 1023 | WP_005031026.1 | IS21 family transposase IS100kyp | Transposase |
| C1P60_RS00535 () | 74120..74902 | + | 783 | WP_012421731.1 | IS21 family transposase IS100kyp | Transposase |
| C1P60_RS00540 () | 74969..75306 | + | 338 | Protein_93 | IS1 family transposase | - |
| C1P60_RS00550 () | 75628..76827 | + | 1200 | WP_000200287.1 | AAA family ATPase | - |
| C1P60_RS00555 () | 76827..77807 | + | 981 | WP_000431558.1 | ParB/RepB/Spo0J family partition protein | - |
| C1P60_RS00560 () | 78063..78545 | + | 483 | Protein_96 | IS110 family transposase ISSde4 | Transposase |
| C1P60_RS00565 () | 78575..78754 | - | 180 | Protein_97 | transposase domain-containing protein | - |
| C1P60_RS00570 () | 78837..80015 | - | 1179 | WP_073692916.1 | group II intron reverse transcriptase/maturase | - |
| C1P60_RS00580 () | 80541..80720 | - | 180 | Protein_99 | transposase | - |
| C1P60_RS00585 () | 80757..81966 | - | 1210 | Protein_100 | IS3 family transposase IS629 | Transposase |
| C1P60_RS25450 () | 82020..82091 | + | 72 | Protein_101 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P60_RS00595 () | 82088..82438 | + | 351 | Protein_102 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P60_RS00600 () | 82469..84061 | + | 1593 | WP_001072392.1 | IS66 family transposase ISEc43 | Transposase |
| C1P60_RS00610 () | 84354..85481 | - | 1128 | WP_001063816.1 | IS110 family transposase ISSso6 | Transposase |
| C1P60_RS00615 () | 85622..86107 | - | 486 | WP_000501969.1 | GNAT family N-acetyltransferase | Toxin Detail |
| C1P60_RS00620 () | 86095..86379 | - | 285 | WP_011114751.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| C1P60_RS00635 () | 87052..88220 | + | 1169 | WP_134802537.1 | IS3 family transposase IS911 | Transposase |
| C1P60_RS00640 () | 88230..88356 | - | 127 | Protein_108 | IS110 family transposase | - |
| C1P60_RS00655 () | 89920..90189 | - | 270 | Protein_110 | IS3 family transposase ISEc48 | Transposase |
| C1P60_RS25215 () | 90304..90942 | - | 639 | WP_000607008.1 | hypothetical protein | VF |
| C1P60_RS00665 () | 91101..91598 | - | 498 | Protein_112 | IS1 family transposase | - |
| C1P60_RS00670 () | 91598..93199 | - | 1602 | WP_004967149.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P60_RS00675 () | 93219..93401 | - | 183 | WP_089519923.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P60_RS00685 () | 93704..94913 | + | 1210 | Protein_115 | IS3 family transposase IS629 | Transposase |
| C1P60_RS00690 () | 94956..95479 | - | 524 | Protein_116 | IS3 family transposase ISSfl11 | Transposase |
| C1P60_RS25220 () | 95518..95670 | + | 153 | WP_011114782.1 | hypothetical protein | - |
| C1P60_RS25455 () | 96028..96171 | + | 144 | Protein_118 | IS1 family transposase | - |
| C1P60_RS00700 () | 96318..96586 | + | 269 | Protein_119 | hypothetical protein | - |
| C1P60_RS00705 () | 96976..98703 | + | 1728 | WP_012421744.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
| C1P60_RS00710 () | 98733..98888 | - | 156 | Protein_121 | IS256 family transposase ISEc39 | Transposase |
| C1P60_RS00715 () | 99084..100160 | - | 1077 | Protein_122 | IS3 family transposase IS911 | Transposase |
| C1P60_RS00720 () | 100234..100652 | - | 419 | Protein_123 | transposase | - |
| C1P60_RS00725 () | 100651..101022 | + | 372 | Protein_124 | IS21 family transposase IS100 | Transposase |
| C1P60_RS00730 () | 101015..101803 | - | 789 | WP_005116773.1 | AraC family invasion system transcriptional regulator VirF | - |
| C1P60_RS00735 () | 102135..102832 | - | 698 | Protein_126 | IS1 family transposase IS1R | Transposase |
| C1P60_RS00740 () | 102892..102990 | + | 99 | Protein_127 | transposase | - |
| C1P60_RS00745 () | 103172..103438 | + | 267 | WP_000957717.1 | hypothetical protein | VF |
| C1P60_RS00750 () | 103808..105004 | - | 1197 | WP_134797190.1 | IS110 family transposase ISEc20 | Transposase |
| C1P60_RS00755 () | 105469..105780 | + | 312 | WP_000483533.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1P60_RS00760 () | 105780..106067 | + | 288 | WP_000865087.1 | helix-turn-helix transcriptional regulator | - |
| C1P60_RS00770 () | 106605..107792 | - | 1188 | WP_024258531.1 | IS91 family transposase ISEc37 | Transposase |
| C1P60_RS00775 () | 107792..108157 | - | 366 | WP_000124079.1 | hypothetical protein | - |
| C1P60_RS00780 () | 108242..108571 | + | 330 | Protein_134 | Tn3 family transposase TnpA_ISSod9 | Transposase |
| C1P60_RS00785 () | 108601..108684 | + | 84 | Protein_135 | CopG family transcriptional regulator | - |
| C1P60_RS00790 () | 108684..108779 | + | 96 | Protein_136 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1P60_RS00795 () | 108952..109893 | - | 942 | Protein_137 | IS91 family transposase ISSbo1 | Transposase |
| C1P60_RS00800 () | 109988..110368 | + | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| C1P60_RS00805 () | 110365..110712 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C1P60_RS00810 () | 110761..112143 | + | 1383 | Protein_140 | IS66 family transposase ISEc22 | Transposase |
| C1P60_RS00820 () | 112236..112616 | + | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| C1P60_RS00825 () | 112613..112960 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C1P60_RS00830 () | 113009..114547 | + | 1539 | WP_000099170.1 | IS66 family transposase ISEc22 | Transposase |
| C1P60_RS25125 () | 114587..114748 | + | 162 | Protein_144 | IS66 family transposase | - |
| C1P60_RS00840 () | 114785..115093 | + | 309 | Protein_145 | IS1 family transposase IS1X2 | Transposase |
| C1P60_RS00845 () | 115133..115252 | - | 120 | Protein_146 | transposase domain-containing protein | - |
| C1P60_RS00850 () | 115326..115616 | - | 291 | Protein_147 | reverse transcriptase | - |
| C1P60_RS00855 () | 115688..115819 | + | 132 | Protein_148 | IS3 family transposase IS911 | Transposase |
| C1P60_RS00860 () | 115863..117076 | - | 1214 | Protein_149 | IS3 family transposase IS629 | Transposase |
| C1P60_RS00865 () | 117130..118169 | + | 1040 | Protein_150 | IS3 family transposase IS911 | Transposase |
| C1P60_RS00885 () | 119188..120147 | + | 960 | WP_000921951.1 | plasmid segregation protein ParM | - |
| C1P60_RS00890 () | 120147..120542 | + | 396 | WP_000445931.1 | plasmid partitioning/stability family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|