NZ_CP0268121..181479

MGE detailed information

MGE type: Non-Mobilizable plasmid        MGE length: 181479 bp
Accession: NZ_CP026812        Location: 1..181479         Organism: Shigella flexneri strain 64-5500       Replicon: plasmid unnamed


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1P83_RS24290 1511..1630 + 120 Protein_1 DUF3440 domain-containing protein -
C1P83_RS24295 1880..2746 + 867 WP_001046942.1 hypothetical protein VF
C1P83_RS24300 3076..3816 + 741 WP_000850661.1 PAP2 family phosphatase PhoN2 -
C1P83_RS26680 3889..4011 + 123 WP_000537156.1 IS3 family transposase IS629 Transposase
C1P83_RS24310 4169..4349 - 181 Protein_5 hypothetical protein VF
C1P83_RS25870 5109..6373 - 1265 Protein_7 type 3 secretion system effector OspC4 -
C1P83_RS24335 8100..8618 - 519 Protein_9 IS66 family transposase IS679 Transposase
C1P83_RS24340 8635..9320 - 686 Protein_10 IS3 family transposase ISSfl11 Transposase
C1P83_RS24345 9659..9925 + 267 Protein_11 hypothetical protein -
C1P83_RS24350 10010..11718 - 1709 Protein_12 hypothetical protein VF
C1P83_RS24355 12150..12869 - 720 WP_001121865.1 Phosphothreonine lyase OspF VF
C1P83_RS24360 12994..13557 - 564 Protein_14 ISL3 family transposase ISKox3 Transposase
C1P83_RS24365 13541..13799 + 259 Protein_15 IS1 family transposase -
C1P83_RS24370 13908..14486 - 579 WP_000868560.1 hypothetical protein -
C1P83_RS26465 14535..14793 - 259 Protein_17 integrase core domain-containing protein -
C1P83_RS24375 14907..15144 - 238 Protein_18 ATP-binding protein -
C1P83_RS24380 15331..15760 - 430 Protein_19 IS91 family transposase ISEc37 Transposase
C1P83_RS25630 15808..15993 - 186 WP_005008511.1 hypothetical protein -
C1P83_RS25875 16156..16437 + 282 Protein_21 IS66 family transposase ISCro1 Transposase
C1P83_RS24395 16451..17795 - 1345 Protein_22 IS4 family transposase IS4 Transposase
C1P83_RS24400 17862..18239 + 378 Protein_23 IS66 family transposase ISCro1 Transposase
C1P83_RS24405 18239..18586 + 348 WP_000622995.1 IS66 family transposase ISCro1 Transposase
C1P83_RS24410 18606..19760 + 1155 Protein_25 IS66 family transposase ISCro1 Transposase
C1P83_RS24415 19764..19923 + 160 Protein_26 IS3 family transposase -
C1P83_RS24420 20512..20810 + 299 Protein_27 IS256 family transposase IS1414 Transposase
C1P83_RS24425 20892..21029 + 138 Protein_28 IS630 family transposase -
C1P83_RS25880 21400..22076 + 677 Protein_29 hypothetical protein VF
C1P83_RS26475 22397..22510 + 114 Protein_30 IS3 family transposase -
C1P83_RS25885 22588..22902 + 315 WP_032490754.1 hypothetical protein -
C1P83_RS24450 23184..23750 + 567 WP_005057975.1 hypothetical protein VF
C1P83_RS26480 24012..24134 - 123 Protein_33 transposase domain-containing protein -
C1P83_RS24460 24277..24831 + 555 Protein_34 IS3 family transposase IS3H Transposase
C1P83_RS24470 25948..26308 + 361 Protein_36 IS1 family transposase -
C1P83_RS24480 26395..27403 + 1009 Protein_37 IS21 family transposase IS100kyp Transposase
C1P83_RS24490 27516..28725 + 1210 Protein_38 IS3 family transposase IS629 Transposase
C1P83_RS24495 28709..29491 + 783 WP_011379060.1 IS21 family transposase IS100kyp Transposase
C1P83_RS24500 29558..29896 + 339 Protein_40 IS1 family transposase -
C1P83_RS26485 29910..30044 + 135 Protein_41 hypothetical protein -
C1P83_RS24510 30218..31417 + 1200 WP_000200287.1 AAA family ATPase -
C1P83_RS24515 31417..32397 + 981 WP_000431558.1 ParB family protein -
C1P83_RS25640 32653..32889 + 237 WP_158250172.1 IS110 family transposase ISAzvi2 Transposase
C1P83_RS24525 33024..33380 + 357 WP_004983733.1 IS66 family transposase IS682 Transposase
C1P83_RS24530 33377..33727 + 351 WP_000624671.1 IS66 family transposase IS682 Transposase
C1P83_RS24535 33758..35350 + 1593 WP_001072392.1 IS66 family transposase ISEc43 Transposase
C1P83_RS24540 35386..35652 + 267 WP_241547467.1 transposase -
C1P83_RS25890 35703..35857 - 155 Protein_49 transposase domain-containing protein -
C1P83_RS24550 35940..37037 - 1098 Protein_50 group II intron reverse transcriptase/maturase -
C1P83_RS26490 36989..37144 + 156 Protein_51 hypothetical protein -
C1P83_RS24555 37152..37637 - 486 WP_000501969.1 GNAT family N-acetyltransferase Toxin Detail
C1P83_RS24560 37625..37909 - 285 WP_011114751.1 DUF1778 domain-containing protein Antitoxin Detail
C1P83_RS24575 38582..39750 + 1169 WP_134801051.1 IS3 family transposase -
C1P83_RS24580 39808..40934 - 1127 Protein_55 IS110 family transposase ISSso6 Transposase
C1P83_RS24585 41433..42221 + 789 WP_005116773.1 AraC family invasion system transcriptional regulator VirF -
C1P83_RS24590 42214..42585 - 372 Protein_57 IS21 family transposase IS100 Transposase
C1P83_RS24595 42584..43002 + 419 Protein_58 transposase -
C1P83_RS24600 43076..43452 + 377 Protein_59 IS3 family transposase IS911 Transposase
C1P83_RS24605 43508..44721 + 1214 WP_134810244.1 IS3 family transposase IS629 Transposase
C1P83_RS25895 44800..44919 - 120 Protein_61 IS66 family transposase ISCro1 Transposase
C1P83_RS24620 45036..46733 - 1698 WP_005058548.1 hypothetical protein VF
C1P83_RS24625 46809..46957 + 149 Protein_63 IS1 family transposase -
C1P83_RS24630 47061..48473 - 1413 WP_001026856.1 hypothetical protein VF
C1P83_RS24635 48924..48986 + 63 Protein_65 IS66 family transposase ISCro1 Transposase
C1P83_RS24640 49007..49228 - 222 Protein_66 IS66 family transposase ISCro1 Transposase
C1P83_RS26495 49371..49565 - 195 Protein_67 HNH endonuclease signature motif containing protein -
C1P83_RS26500 49619..49807 + 189 Protein_68 IS91 family transposase -
C1P83_RS24655 50180..51355 - 1176 WP_001020414.1 putative protein YncE VF
C1P83_RS24665 51424..53685 - 2262 WP_001100761.1 TonB-dependent receptor -
C1P83_RS24670 53854..54630 - 777 WP_000981089.1 energy transducer TonB -
C1P83_RS24675 54638..55513 - 876 WP_001224620.1 ChaN family lipoprotein -
C1P83_RS24680 55790..56005 + 216 Protein_73 IS91 family transposase -
C1P83_RS24685 56072..57418 + 1347 WP_000483764.1 IS4 family transposase IS4 Transposase
C1P83_RS24690 57432..57721 + 290 Protein_75 IS91 family transposase ISSbo1 Transposase
C1P83_RS24695 57894..57989 - 96 Protein_76 type II toxin-antitoxin system RelE/ParE family toxin -
C1P83_RS24700 57989..58072 - 84 Protein_77 CopG family transcriptional regulator -
C1P83_RS24705 58102..58497 - 396 WP_000174726.1 Tn3 family transposase TnpA_ISSod9 Transposase
C1P83_RS24710 58516..58881 + 366 WP_000124126.1 hypothetical protein -
C1P83_RS24715 58881..60068 + 1188 WP_024258531.1 IS91 family transposase ISEc37 Transposase
C1P83_RS24730 60605..60892 - 288 WP_000865087.1 helix-turn-helix transcriptional regulator -
C1P83_RS24735 60892..61203 - 312 WP_000483533.1 type II toxin-antitoxin system RelE/ParE family toxin -
C1P83_RS24745 61668..62864 + 1197 Protein_83 IS110 family transposase ISSfl4 Transposase
C1P83_RS24750 63235..63501 - 267 WP_000957717.1 hypothetical protein VF
C1P83_RS24755 63683..64081 - 399 Protein_85 integrase core domain-containing protein -
C1P83_RS24765 64404..65530 - 1127 Protein_86 IS110 family transposase ISSso6 Transposase
C1P83_RS24770 65660..65943 - 284 Protein_87 IS110 family transposase -
C1P83_RS24785 67507..67776 - 270 Protein_89 IS3 family transposase ISEc48 Transposase
C1P83_RS25900 67891..68529 - 639 WP_000607008.1 hypothetical protein VF
C1P83_RS24795 68761..69989 + 1229 WP_164994074.1 IS3 family transposase IS2 Transposase
C1P83_RS24800 70024..70521 - 498 Protein_92 IS1 family transposase -
C1P83_RS24805 70521..71372 - 852 Protein_93 IS66 family transposase ISSfl3 Transposase
C1P83_RS24810 71429..72638 + 1210 Protein_94 IS3 family transposase IS629 Transposase
C1P83_RS24820 73006..74460 + 1455 WP_000701115.1 hypothetical protein VF
C1P83_RS24830 74798..75954 + 1157 WP_094096518.1 IS3 family transposase IS600 Transposase
C1P83_RS24835 75998..76159 + 162 Protein_97 IS3 family transposase -
C1P83_RS24840 76183..77379 - 1197 Protein_98 IS110 family transposase ISSfl4 Transposase
C1P83_RS24845 77571..78561 - 991 Protein_99 IS21 family transposase IS100kyp Transposase
C1P83_RS26505 78908..79717 + 810 Protein_100 IS110 family transposase -
C1P83_RS24855 79914..80693 + 780 WP_005059304.1 Cysteine protease IpaJ VF
C1P83_RS24860 81637..82566 - 930 WP_000227976.1 virulence regulon transcriptional activator VirB -
C1P83_RS24865 82783..83019 - 237 WP_000588812.1 Acyl carrier protein VF
C1P83_RS24870 83023..84924 - 1902 WP_005059309.1 Invasin IpaA VF
C1P83_RS24875 84933..85931 - 999 WP_001028031.1 Invasin IpaD VF
C1P83_RS24880 85982..87073 - 1092 WP_000405473.1 Invasin IpaC VF
C1P83_RS24885 87093..88835 - 1743 WP_000552058.1 Invasin IpaB VF
C1P83_RS24890 88841..89308 - 468 WP_000055835.1 Chaperone protein IpgC VF
C1P83_RS24895 89366..89992 - 627 WP_001166515.1 hypothetical protein VF
C1P83_RS24900 90008..90397 - 390 WP_010921664.1 hypothetical protein VF
C1P83_RS24905 90410..91894 - 1485 WP_000601049.1 hypothetical protein VF
C1P83_RS24915 92208..93824 + 1617 WP_000548331.1 Inositol phosphate phosphatase IpgD VF
C1P83_RS24920 93834..94196 + 363 WP_000389733.1 Chaperone protein IpgE VF
C1P83_RS24925 94196..94654 + 459 WP_000086106.1 hypothetical protein VF
C1P83_RS24930 94663..95778 + 1116 WP_001287351.1 Protein MxiG VF
C1P83_RS24935 95786..96037 + 252 WP_032324888.1 Protein MxiH VF
C1P83_RS24940 96050..96343 + 294 WP_001106822.1 hypothetical protein VF
C1P83_RS24945 96349..97074 + 726 WP_024260580.1 Lipoprotein PrgK VF
C1P83_RS24950 97071..97598 + 528 WP_000620628.1 Oxygen-regulated invasion protein OrgA VF
C1P83_RS24955 97540..98235 + 696 WP_011310390.1 Oxygen-regulated invasion protein OrgB VF
C1P83_RS24960 98228..98635 + 408 WP_000609863.1 hypothetical protein VF
C1P83_RS24965 98619..99047 + 429 WP_001346200.1 Lipoprotein MxiM VF
C1P83_RS24970 99177..99809 + 633 WP_000398259.1 Invasion protein InvF VF
C1P83_RS24975 99796..101496 + 1701 WP_000714359.1 Outer membrane protein MxiD VF
C1P83_RS24980 101515..102582 + 1068 WP_000887823.1 Protein MxiC VF
C1P83_RS24985 102595..104655 + 2061 WP_032490756.1 Protein MxiA VF
C1P83_RS24990 104668..105069 + 402 WP_000065501.1 Surface presentation of antigens protein SpaK VF
C1P83_RS24995 105073..106365 + 1293 WP_000120387.1 putative ATP synthase SpaL/MxiB VF
C1P83_RS25000 106458..106796 + 339 WP_000387670.1 hypothetical protein VF
C1P83_RS25005 106783..107661 + 879 WP_001162455.1 Surface presentation of antigens protein SpaN VF
C1P83_RS25010 107655..108536 + 882 WP_000944308.1 Surface presentation of antigens protein SpaO VF
C1P83_RS25015 108541..109191 + 651 WP_000947538.1 Surface presentation of antigens protein SpaP VF
C1P83_RS25020 109206..109466 + 261 WP_001280546.1 hypothetical protein VF
C1P83_RS25025 109466..110236 + 771 WP_000355395.1 Surface presentation of antigens protein SpaR VF
C1P83_RS25030 110243..111271 + 1029 WP_001284685.1 Surface presentation of antigens protein SpaS VF
C1P83_RS25035 111293..111526 + 234 WP_000538708.1 biofilm/acid-resistance regulator YmgB/AriR -
C1P83_RS25040 112133..113166 - 1034 Protein_137 IS3 family transposase ISSfl11 Transposase
C1P83_RS25045 113231..113440 + 210 Protein_138 integrase core domain-containing protein -
C1P83_RS25050 113482..114116 - 635 Protein_139 IS3 family transposase IS3H Transposase
C1P83_RS25905 114179..114583 - 405 WP_011114759.1 hypothetical protein -
C1P83_RS26510 114773..114901 - 129 Protein_141 IS630 family transposase -
C1P83_RS25065 115135..115851 - 717 WP_005059327.1 hypothetical protein -
C1P83_RS25075 116486..117183 + 698 WP_094106546.1 IS1 family transposase IS1X2 Transposase
C1P83_RS25080 117223..117421 - 199 Protein_144 IS110 family transposase ISEc32 Transposase
C1P83_RS25085 117451..117912 - 462 Protein_145 ISL3 family transposase ISKox3 Transposase
C1P83_RS25090 117965..119174 + 1210 Protein_146 IS3 family transposase IS629 Transposase
C1P83_RS25095 119201..119350 - 150 Protein_147 ISL3 family transposase ISEc53 Transposase
C1P83_RS25100 119531..119960 - 430 Protein_148 IS91 family transposase IS91 Transposase
C1P83_RS25105 120008..120289 - 282 WP_005058080.1 hypothetical protein -
C1P83_RS25910 121127..121525 - 399 Protein_150 reverse transcriptase/maturase family protein -
C1P83_RS25125 121528..121894 - 367 Protein_151 IS3 family transposase IS629 Transposase
C1P83_RS25130 121896..122584 - 689 Protein_152 IS3 family transposase IS629 Transposase
C1P83_RS25135 122763..123964 - 1202 Protein_153 alpha-tubulin-specific protease -
C1P83_RS25140 124493..127798 + 3306 Protein_154 Outer membrane protein IcsA autotransporter VF
C1P83_RS25145 127942..128260 + 319 Protein_155 Outer membrane usher protein PapC VF
C1P83_RS25150 128433..129645 + 1213 Protein_156 IS3 family transposase IS629 Transposase
C1P83_RS25155 130019..131638 + 1620 WP_232970571.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA -
C1P83_RS25160 131649..131819 - 171 Protein_158 transposase -
C1P83_RS25170 131992..132689 + 698 WP_094106546.1 IS1 family transposase IS1X2 Transposase
C1P83_RS25175 132729..132848 - 120 Protein_160 transposase domain-containing protein -
C1P83_RS25185 133074..134666 - 1593 WP_001072385.1 IS66 family transposase ISEc43 Transposase
C1P83_RS25190 134697..135047 - 351 WP_000624671.1 IS66 family transposase IS682 Transposase
C1P83_RS25195 135044..135367 - 324 WP_226342183.1 IS66 family transposase IS682 Transposase
C1P83_RS25200 135427..135881 + 455 Protein_164 IS3 family transposase IS911 Transposase
C1P83_RS25210 137239..137346 + 108 Protein_166 IS66 family insertion sequence element accessory protein TnpB -
C1P83_RS25215 137343..137693 + 351 WP_000624671.1 IS66 family transposase IS682 Transposase
C1P83_RS25220 137724..139316 + 1593 WP_001072392.1 IS66 family transposase ISEc43 Transposase
C1P83_RS25225 139347..139859 + 513 Protein_169 IS630 family transposase IS630 Transposase
C1P83_RS25230 140013..140957 - 945 WP_005027201.1 Lipid A biosynthesis myristoyltransferase 2 VF
C1P83_RS25235 141022..141972 - 951 WP_005059240.1 virulence factor VirK -
C1P83_RS25240 141977..143065 - 1089 WP_005059238.1 putative hexosyltransferase CapU -
C1P83_RS25245 143068..143910 - 843 WP_000931198.1 polysaccharide deacetylase family protein -
C1P83_RS25915 144274..144426 - 153 WP_171763767.1 hypothetical protein -
C1P83_RS26515 144392..144544 + 153 Protein_175 hypothetical protein -
C1P83_RS25250 144596..145293 + 698 WP_226342160.1 IS1 family transposase IS1X2 Transposase
C1P83_RS26520 145357..145526 - 170 Protein_177 type II toxin-antitoxin system toxin YacB -
C1P83_RS25260 145526..145795 - 270 WP_000079956.1 type II toxin-antitoxin system antitoxin YacA -
C1P83_RS25265 146003..147640 - 1638 WP_032490759.1 E3 ubiquitin-protein ligase ipaH9.8 VF
C1P83_RS25275 148033..148338 - 306 WP_001159860.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
C1P83_RS25280 148340..148558 - 219 WP_000813626.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
C1P83_RS26525 149151..149234 + 84 Protein_182 hypothetical protein -
C1P83_RS25290 149243..149959 - 717 Protein_183 IS3 family transposase ISLad1 Transposase
C1P83_RS25295 150014..150945 + 932 Protein_184 IS3 family transposase IS629 Transposase
C1P83_RS25300 150979..152571 - 1593 WP_001072385.1 IS66 family transposase ISEc43 Transposase
C1P83_RS25305 152602..152952 - 351 WP_000624671.1 IS66 family transposase IS682 Transposase
C1P83_RS25310 152949..153305 - 357 WP_005054686.1 IS66 family transposase IS682 Transposase
C1P83_RS25315 153457..153621 - 165 Protein_188 IS630 family transposase -
C1P83_RS25325 154390..154863 + 474 Protein_190 conjugal transfer protein TraD -
C1P83_RS25330 154872..155270 - 399 WP_000911318.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
C1P83_RS25335 155270..155497 - 228 WP_000450530.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
C1P83_RS25345 155579..160856 + 5278 Protein_193 Multifunctional conjugation protein TraI Relaxase
C1P83_RS25350 160876..161622 + 747 WP_000205722.1 conjugal transfer pilus acetylase TraX -
C1P83_RS25355 161677..162237 + 561 WP_005056178.1 fertility inhibition protein FinO -
C1P83_RS25360 162368..162580 + 213 WP_011379083.1 ANR family transcriptional regulator -
C1P83_RS25370 162824..163285 + 462 WP_001233866.1 thermonuclease family protein -
C1P83_RS25375 163331..163540 + 210 WP_001299729.1 hemolysin expression modulator Hha -
C1P83_RS25380 163579..164169 + 591 WP_000766820.1 DUF2726 domain-containing protein -
C1P83_RS25385 164409..164669 + 261 WP_000083819.1 replication regulatory protein RepA -
C1P83_RS25395 164893..164967 + 75 WP_001365705.1 RepA leader peptide Tap -
C1P83_RS25400 164960..165817 + 858 WP_000130973.1 incFII family plasmid replication initiator RepA -
C1P83_RS25410 166870..167133 - 264 Protein_203 IS110 family transposase IS1663 Transposase
C1P83_RS25920 168513..168701 - 189 WP_000957844.1 hypothetical protein -
C1P83_RS25425 168809..169063 - 255 Protein_206 IS3 family transposase IS1203 Transposase
C1P83_RS25430 169118..169399 + 282 Protein_207 transposase domain-containing protein -
C1P83_RS26530 169472..169549 - 78 Protein_208 IS630 family transposase IS630 Transposase
C1P83_RS25440 170913..172367 + 1455 WP_000701107.1 hypothetical protein VF
C1P83_RS25450 172506..173714 - 1209 WP_000198551.1 IS91 family transposase ISSbo1 Transposase
C1P83_RS25455 173695..173967 - 273 WP_000019158.1 hypothetical protein -
C1P83_RS25465 174239..174541 + 303 WP_010921625.1 DUF1778 domain-containing protein Antitoxin Detail
C1P83_RS25470 174532..175014 + 483 WP_000405246.1 GNAT family N-acetyltransferase Toxin Detail
C1P83_RS25475 175082..175605 + 524 Protein_215 IS3 family transposase ISSfl11 Transposase
C1P83_RS25480 175648..175977 - 330 Protein_216 IS3 family transposase IS629 Transposase
C1P83_RS25485 176058..177226 + 1169 WP_094096489.1 IS3-like element IS911 family transposase -
C1P83_RS25490 177250..177942 - 693 WP_000625262.1 hypothetical protein VF
C1P83_RS25495 177998..178150 + 153 Protein_219 IS3 family transposase -
C1P83_RS25655 178432..178569 - 138 WP_011378983.1 hypothetical protein -
C1P83_RS25505 179531..180477 + 947 Protein_221 Outer membrane protease IcsP VF
C1P83_RS25660 180446..180613 - 168 WP_000165219.1 IS3 family transposase IS629 Transposase
C1P83_RS25515 181039..181411 - 373 Protein_223 IS3 family transposase IS2 Transposase

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance