MGE detailed information
MGE type: Genomic_island MGE length: 19387 bp
Accession: NZ_CP026612 Location: 1928821..1948207 Organism: Escherichia coli strain DTU-1 Replicon: chromosome
Accession: NZ_CP026612 Location: 1928821..1948207 Organism: Escherichia coli strain DTU-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4J63_RS09765 () | 1923972..1924886 | - | 915 | WP_000648572.1 | LysR family transcriptional regulator | - |
| C4J63_RS09770 () | 1925127..1925927 | + | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| C4J63_RS09775 () | 1925958..1926554 | + | 597 | Protein_1768 | methyltransferase domain-containing protein | - |
| C4J63_RS09780 () | 1926602..1927960 | - | 1359 | WP_000644685.1 | murein transglycosylase D | - |
| C4J63_RS09785 () | 1928032..1928787 | - | 756 | WP_001052715.1 | hydroxyacylglutathione hydrolase | - |
| C4J63_RS09790 () | 1928821..1929543 | + | 723 | WP_001326702.1 | class I SAM-dependent methyltransferase | - |
| C4J63_RS09795 () | 1929540..1930007 | - | 468 | WP_000917883.1 | ribonuclease HI | - |
| C4J63_RS09800 () | 1930072..1930803 | + | 732 | WP_001340895.1 | DNA polymerase III subunit epsilon | - |
| C4J63_RS09815 () | 1931340..1932125 | + | 786 | WP_001086141.1 | lipoprotein | - |
| C4J63_RS09820 () | 1932262..1932741 | - | 480 | WP_001236645.1 | hypothetical protein | - |
| C4J63_RS09825 () | 1932751..1933107 | - | 357 | Protein_1776 | hypothetical protein | - |
| C4J63_RS09830 () | 1933105..1933383 | + | 279 | Protein_1777 | ISAs1 family transposase | - |
| C4J63_RS09835 () | 1933424..1934194 | - | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| C4J63_RS09840 () | 1934375..1934821 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| C4J63_RS09845 () | 1934864..1937308 | - | 2445 | WP_000973083.1 | Acyl-coenzyme A dehydrogenase | VF |
| C4J63_RS09850 () | 1937548..1938126 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| C4J63_RS09855 () | 1938332..1939099 | + | 768 | WP_104460172.1 | class II glutamine amidotransferase | - |
| C4J63_RS09860 () | 1939070..1939810 | - | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| C4J63_RS09865 () | 1939966..1940244 | - | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| C4J63_RS09870 () | 1940247..1940507 | - | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| C4J63_RS09875 () | 1940717..1941466 | + | 750 | WP_000056849.1 | Murein DD-endopeptidase MepH | VF |
| C4J63_RS09880 () | 1941642..1942139 | + | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| C4J63_RS09885 () | 1942363..1944075 | - | 1713 | Protein_1788 | Flagellar biosynthesis protein FlhA | VF |
| C4J63_RS09890 () | 1944047..1944832 | + | 786 | WP_000207552.1 | Chemotaxis protein LafU | VF |
| C4J63_RS09895 () | 1944903..1945958 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| C4J63_RS09900 () | 1946010..1946303 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| C4J63_RS09905 () | 1946306..1946704 | + | 399 | WP_001263489.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| C4J63_RS09910 () | 1946714..1947166 | + | 453 | WP_001059892.1 | GNAT family N-acetyltransferase | - |
| C4J63_RS09915 () | 1947484..1947690 | + | 207 | Protein_1794 | RtcB family protein | - |
| C4J63_RS09920 () | 1947686..1948207 | + | 522 | Protein_1795 | peptide chain release factor H | - |
| C4J63_RS09925 () | 1948264..1949721 | - | 1458 | WP_001292994.1 | cytosol nonspecific dipeptidase | - |
| C4J63_RS23140 () | 1949982..1950113 | + | 132 | Protein_1797 | xanthine phosphoribosyltransferase | - |
| C4J63_RS09930 () | 1950105..1950836 | + | 732 | Protein_1798 | 2-hydroxy-6-oxonona-2,4-dienedioate hydrolase | - |
| C4J63_RS09935 () | 1950846..1951655 | + | 810 | WP_000160710.1 | 2-keto-4-pentenoate hydratase | - |
| C4J63_RS09940 () | 1951652..1952602 | + | 951 | WP_000044314.1 | acetaldehyde dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA28996, TA28997 | NC_020518 | 223678..243064 | 0 |