MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 107229 bp
Accession: NZ_CP026474 Location: 1..107229 Organism: Escherichia coli strain KBN10P04869 Replicon: plasmid pKBN10P04869A
Accession: NZ_CP026474 Location: 1..107229 Organism: Escherichia coli strain KBN10P04869 Replicon: plasmid pKBN10P04869A
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YKEC1_RS27125 () | 62..196 | + | 135 | Protein_0 | protein CopA/IncA | - |
| YKEC1_RS24865 () | 193..267 | + | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| YKEC1_RS24870 () | 260..1117 | + | 858 | WP_000130640.1 | incFII family plasmid replication initiator RepA | - |
| YKEC1_RS24880 () | 2057..2710 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| YKEC1_RS26760 () | 2803..3060 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| YKEC1_RS24885 () | 2993..3394 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| YKEC1_RS24895 () | 3531..5876 | - | 2346 | Protein_6 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| YKEC1_RS24900 () | 5939..6643 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| YKEC1_RS24905 () | 6787..7341 | + | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| YKEC1_RS24910 () | 7472..8302 | + | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| YKEC1_RS24915 () | 8440..8880 | + | 441 | Protein_10 | CatB-related O-acetyltransferase | - |
| YKEC1_RS24920 () | 8934..9638 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| YKEC1_RS24925 () | 9703..11946 | - | 2244 | Protein_12 | Tn3 family transposase TnpA_Tn3 | Transposase |
| YKEC1_RS24930 () | 11960..12292 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| YKEC1_RS24935 () | 12339..13214 | - | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| YKEC1_RS24945 () | 13596..14300 | - | 705 | WP_001067855.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YKEC1_RS24950 () | 14364..14702 | + | 339 | Protein_16 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YKEC1_RS24955 () | 14885..15745 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| YKEC1_RS24960 () | 15892..18363 | - | 2472 | Protein_18 | Tn3-like element TnAs3 family transposase | - |
| YKEC1_RS24965 () | 18366..18926 | - | 561 | WP_000147567.1 | recombinase family protein | - |
| YKEC1_RS24970 () | 18939..19259 | + | 321 | Protein_20 | IS1380 family transposase ISEcp1 | Transposase |
| YKEC1_RS24975 () | 19499..20140 | + | 642 | WP_000134999.1 | MBL fold metallo-hydrolase | - |
| YKEC1_RS24980 () | 20365..21036 | - | 672 | Protein_22 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| YKEC1_RS24985 () | 21100..21804 | + | 705 | WP_001067858.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| YKEC1_RS24995 () | 21854..22573 | + | 720 | Protein_24 | AAA family ATPase | - |
| YKEC1_RS25000 () | 22560..23411 | + | 852 | WP_000240536.1 | replication protein | - |
| YKEC1_RS25010 () | 23719..24534 | + | 816 | WP_001043265.1 | Dihydropteroate synthase | ARG |
| YKEC1_RS25015 () | 24595..25398 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| YKEC1_RS25020 () | 25398..26234 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| YKEC1_RS25025 () | 26295..26999 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| YKEC1_RS25030 () | 27139..27903 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| YKEC1_RS25045 () | 28396..28980 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| YKEC1_RS25050 () | 28980..30218 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| YKEC1_RS25055 () | 30215..31129 | - | 915 | WP_023063803.1 | hypothetical protein | ARG |
| YKEC1_RS25065 () | 31251..31955 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| YKEC1_RS25070 () | 31992..33119 | - | 1128 | WP_014837927.1 | DUF3883 domain-containing protein | - |
| YKEC1_RS25075 () | 33170..33397 | - | 228 | WP_000248278.1 | hypothetical protein | - |
| YKEC1_RS25080 () | 33421..33612 | + | 192 | WP_000951934.1 | hypothetical protein | - |
| YKEC1_RS25085 () | 34094..34636 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| YKEC1_RS25090 () | 34649..35509 | - | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| YKEC1_RS25100 () | 35652..36614 | + | 963 | Protein_40 | IS4 family transposase IS10R | Transposase |
| YKEC1_RS25105 () | 36724..37569 | + | 846 | Protein_41 | IS4 family transposase IS10R | Transposase |
| YKEC1_RS25110 () | 37624..38328 | - | 705 | WP_001067858.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YKEC1_RS25115 () | 38392..38583 | + | 192 | Protein_43 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YKEC1_RS25120 () | 38766..39626 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| YKEC1_RS25125 () | 39773..40054 | + | 282 | Protein_45 | transposase zinc-binding domain-containing protein | - |
| YKEC1_RS25130 () | 40213..40917 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| YKEC1_RS26900 () | 40970..41116 | - | 147 | Protein_47 | EAL domain-containing protein | - |
| YKEC1_RS25145 () | 41319..42332 | - | 1014 | WP_000845048.1 | class 1 integron integrase IntI1 | - |
| YKEC1_RS25150 () | 42490..42963 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| YKEC1_RS25155 () | 43094..43882 | + | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| YKEC1_RS25160 () | 44088..44435 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| YKEC1_RS25165 () | 44429..45268 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| YKEC1_RS25170 () | 45673..47214 | + | 1542 | WP_000050481.1 | IS91 family transposase ISVsa3 | Transposase |
| YKEC1_RS25180 () | 47527..48558 | + | 1032 | WP_004201169.1 | protein-disulfide reductase DsbD N-terminal domain-containing protein | - |
| YKEC1_RS25185 () | 48569..49207 | - | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| YKEC1_RS25190 () | 49212..49577 | - | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| YKEC1_RS25195 () | 49581..50393 | - | 813 | WP_023408309.1 | Metallo-beta-lactamase type 2 | ARG |
| YKEC1_RS25200 () | 50494..50787 | - | 294 | Protein_58 | IS30 family transposase ISAba125 | Transposase |
| YKEC1_RS25205 () | 50952..51656 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| YKEC1_RS25210 () | 51711..52577 | - | 867 | Protein_60 | class 1 integron integrase IntI1 | - |
| YKEC1_RS25215 () | 52722..53219 | + | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| YKEC1_RS26510 () | 53331..53621 | + | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| YKEC1_RS25220 () | 53627..54418 | + | 792 | WP_001206356.1 | Streptomycin 3''-adenylyltransferase | ARG |
| YKEC1_RS25225 () | 54582..54929 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| YKEC1_RS25230 () | 54923..55762 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| YKEC1_RS25240 () | 55890..56093 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| YKEC1_RS25245 () | 56249..56614 | + | 366 | Protein_67 | chromate transporter | - |
| YKEC1_RS25250 () | 56668..57372 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| YKEC1_RS25255 () | 57506..58099 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| YKEC1_RS25260 () | 58212..59417 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| YKEC1_RS25265 () | 59499..60122 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| YKEC1_RS25270 () | 60100..60219 | - | 120 | Protein_72 | ArsR family transcriptional regulator | - |
| YKEC1_RS25275 () | 60235..60932 | - | 698 | Protein_73 | IS1 family transposase IS1R | Transposase |
| YKEC1_RS25285 () | 60966..61838 | - | 873 | WP_104989445.1 | hypothetical protein | - |
| YKEC1_RS25290 () | 62149..63377 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| YKEC1_RS25300 () | 63667..63974 | + | 308 | Protein_76 | type II toxin-antitoxin system ParD family antitoxin | - |
| YKEC1_RS25310 () | 64317..64499 | + | 183 | WP_042065278.1 | hypothetical protein | - |
| YKEC1_RS25315 () | 64620..65360 | + | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| YKEC1_RS25320 () | 65645..66622 | - | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| YKEC1_RS25330 () | 67418..67831 | - | 414 | Protein_80 | IS3 family transposase ISLad1 | Transposase |
| YKEC1_RS25335 () | 67755..68114 | - | 360 | WP_001513660.1 | hypothetical protein | - |
| YKEC1_RS25340 () | 68142..68321 | - | 180 | WP_001513661.1 | hypothetical protein | - |
| YKEC1_RS25345 () | 68326..68706 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| YKEC1_RS25350 () | 68706..68927 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| YKEC1_RS25355 () | 69110..70666 | + | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| YKEC1_RS25360 () | 70663..71946 | + | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| YKEC1_RS25365 () | 72068..75184 | + | 3117 | WP_031311986.1 | HsdR family type I site-specific deoxyribonuclease | - |
| YKEC1_RS25375 () | 75398..76095 | + | 698 | Protein_88 | IS1 family transposase IS1R | Transposase |
| YKEC1_RS25380 () | 76232..77164 | - | 933 | WP_000991832.1 | hypothetical protein | - |
| YKEC1_RS25385 () | 77168..78163 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| YKEC1_RS25390 () | 78628..80766 | + | 2139 | WP_000350635.1 | AAA family ATPase | - |
| YKEC1_RS25395 () | 80928..81344 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| YKEC1_RS25400 () | 81341..81571 | - | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| YKEC1_RS25410 () | 81878..84997 | + | 3120 | WP_023909028.1 | hypothetical protein | - |
| YKEC1_RS25415 () | 85260..86393 | + | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| YKEC1_RS25420 () | 86413..86697 | + | 285 | WP_000642771.1 | hypothetical protein | - |
| YKEC1_RS25425 () | 86694..86891 | - | 198 | WP_000215657.1 | hypothetical protein | - |
| YKEC1_RS25430 () | 87525..87743 | + | 219 | WP_023909027.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| YKEC1_RS25435 () | 87745..88050 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| YKEC1_RS25440 () | 88051..88857 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| YKEC1_RS25445 () | 89631..90386 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| YKEC1_RS25450 () | 90974..92140 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| YKEC1_RS25455 () | 92140..93111 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YKEC1_RS25470 () | 93978..94880 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| YKEC1_RS25475 () | 94884..95188 | + | 305 | Protein_105 | hypothetical protein | - |
| YKEC1_RS25480 () | 95265..95948 | + | 684 | WP_000086185.1 | DNA methylase | - |
| YKEC1_RS25485 () | 95949..96170 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| YKEC1_RS25490 () | 96184..96618 | + | 435 | WP_000274437.1 | DUF1380 family protein | - |
| YKEC1_RS26765 () | 96669..97445 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| YKEC1_RS25505 () | 97985..98287 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| YKEC1_RS25510 () | 98334..98756 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| YKEC1_RS25515 () | 98753..98935 | + | 183 | Protein_112 | hypothetical protein | - |
| YKEC1_RS25520 () | 98925..101318 | + | 2394 | Protein_113 | Multifunctional conjugation protein TraI | Relaxase |
| YKEC1_RS25525 () | 101338..102084 | + | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| YKEC1_RS25530 () | 102139..102699 | + | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| YKEC1_RS25535 () | 102830..103042 | + | 213 | WP_013023861.1 | hypothetical protein | - |
| YKEC1_RS26905 () | 103555..103841 | + | 287 | Protein_117 | DUF2726 domain-containing protein | - |
| - () | 103808..103868 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 103808..103868 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 103808..103868 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - () | 103808..103868 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| YKEC1_RS25550 () | 103913..104047 | + | 135 | WP_023144756.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| YKEC1_RS25555 () | 104344..104598 | + | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| YKEC1_RS25560 () | 104758..105504 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| YKEC1_RS25565 () | 105519..107060 | - | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|