MGE detailed information
MGE type: Conjugative plasmid MGE length: 111697 bp
Accession: NZ_CP024291 Location: 1..111697 Organism: Escherichia coli O178:H19 strain 2012C-4431 Replicon: plasmid unnamed2
Accession: NZ_CP024291 Location: 1..111697 Organism: Escherichia coli O178:H19 strain 2012C-4431 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5960_RS26655 () | 357..1718 | - | 1362 | WP_028985386.1 | DUF3560 domain-containing protein | - |
| A5960_RS26660 () | 1770..2000 | - | 231 | WP_099528461.1 | hypothetical protein | - |
| A5960_RS28585 () | 2678..2986 | + | 309 | WP_071830340.1 | pilus assembly protein | - |
| A5960_RS26675 () | 2965..3156 | - | 192 | WP_001027048.1 | hypothetical protein | - |
| A5960_RS26680 () | 3156..3575 | - | 420 | WP_000271710.1 | DUF1380 family protein | - |
| A5960_RS26685 () | 3622..3924 | - | 303 | WP_137538285.1 | antirestriction protein | - |
| A5960_RS26695 () | 4463..5209 | - | 747 | WP_198406610.1 | hypothetical protein | - |
| A5960_RS28590 () | 5183..5590 | - | 408 | Protein_8 | DUF1380 family protein | - |
| A5960_RS26700 () | 5604..5825 | - | 222 | WP_001104895.1 | hypothetical protein | - |
| A5960_RS26705 () | 5826..6509 | - | 684 | WP_099528464.1 | DNA methylase | - |
| A5960_RS26710 () | 6586..6898 | - | 313 | Protein_11 | hypothetical protein | - |
| A5960_RS26715 () | 6895..7797 | - | 903 | WP_077629773.1 | DUF1281 domain-containing protein | - |
| A5960_RS26725 () | 8073..8321 | + | 249 | WP_000618108.1 | DinI-like family protein | - |
| A5960_RS26730 () | 8318..8755 | + | 438 | WP_028985391.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| A5960_RS26735 () | 8755..10025 | + | 1271 | Protein_15 | translesion error-prone DNA polymerase V subunit UmuC | - |
| A5960_RS26745 () | 10030..10422 | - | 393 | WP_000340836.1 | plasmid partitioning/stability family protein | - |
| A5960_RS26750 () | 10427..11398 | - | 972 | WP_001103695.1 | hypothetical protein | - |
| A5960_RS26755 () | 11627..12271 | + | 645 | WP_028985392.1 | AAA family ATPase | - |
| A5960_RS26760 () | 12265..12540 | + | 276 | WP_000239527.1 | hypothetical protein | - |
| A5960_RS26765 () | 12678..13487 | - | 810 | WP_000016958.1 | site-specific integrase | - |
| A5960_RS26770 () | 13488..13793 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| A5960_RS26775 () | 13795..14013 | - | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| A5960_RS26780 () | 14609..14869 | + | 261 | WP_000343084.1 | hypothetical protein | - |
| A5960_RS26785 () | 14866..15456 | + | 591 | WP_000194564.1 | hypothetical protein | - |
| A5960_RS26790 () | 15474..15821 | - | 348 | WP_000142428.1 | hypothetical protein | - |
| A5960_RS26800 () | 16006..16284 | + | 279 | WP_001365566.1 | hypothetical protein | - |
| A5960_RS26805 () | 16291..16626 | - | 336 | Protein_27 | colicin | - |
| A5960_RS26810 () | 16721..17452 | - | 732 | WP_000850413.1 | complement resistance protein TraT | - |
| A5960_RS28595 () | 17729..17839 | - | 111 | Protein_29 | IS481 family transposase | - |
| A5960_RS26830 () | 18622..19599 | + | 978 | WP_001369978.1 | RepB family plasmid replication initiator protein | - |
| A5960_RS26835 () | 19838..20120 | - | 283 | Protein_31 | ISL3 family transposase ISEc53 | Transposase |
| A5960_RS26840 () | 20277..20507 | - | 231 | WP_032279745.1 | hypothetical protein | - |
| A5960_RS26850 () | 20637..21131 | - | 495 | WP_099528465.1 | Transcriptional repressor MprA | VF |
| A5960_RS26855 () | 21252..22691 | - | 1440 | WP_001213534.1 | Hemolysin secretion protein D, chromosomal | VF |
| A5960_RS26860 () | 22695..24815 | - | 2121 | WP_072094473.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| A5960_RS26865 () | 24865..27861 | - | 2997 | WP_011310119.1 | Hemolysin, chromosomal | VF |
| A5960_RS26870 () | 27863..28378 | - | 516 | WP_001365635.1 | RTX-I toxin-activating lysine-acyltransferase ApxIC | VF |
| A5960_RS26880 () | 28806..29609 | - | 804 | WP_000899428.1 | Outer membrane protein A | VF |
| A5960_RS26885 () | 29634..33941 | - | 4308 | WP_099528466.1 | Autotransporter adhesin SadA | VF |
| A5960_RS26890 () | 34162..34446 | - | 285 | WP_000439678.1 | Major pilu subunit operon regulatory protein PapB | VF |
| A5960_RS26905 () | 35053..35600 | + | 548 | Protein_41 | transposase | - |
| A5960_RS26915 () | 35930..36364 | + | 435 | Protein_42 | IS110 family transposase ISEc21 | Transposase |
| A5960_RS26920 () | 36451..37988 | + | 1538 | Protein_43 | IS3 family transposase | - |
| A5960_RS26925 () | 38093..38722 | + | 630 | Protein_44 | transposase | - |
| A5960_RS26930 () | 38742..39090 | + | 349 | Protein_45 | integrase core domain-containing protein | - |
| A5960_RS26935 () | 39455..41011 | + | 1557 | WP_000554412.1 | L-lactate permease | - |
| A5960_RS26940 () | 41062..41781 | + | 720 | WP_001102093.1 | (Fe-S)-binding protein | - |
| A5960_RS26945 () | 41792..43207 | + | 1416 | WP_000054160.1 | iron-sulfur cluster-binding protein | - |
| A5960_RS26950 () | 43212..43910 | + | 699 | WP_000431492.1 | lactate utilization protein C | - |
| A5960_RS26955 () | 43951..44187 | - | 237 | WP_001369996.1 | hypothetical protein | - |
| A5960_RS26960 () | 44255..44719 | - | 465 | WP_077746874.1 | IS3 family transposase ISKpn8 | Transposase |
| A5960_RS26965 () | 44835..45146 | - | 312 | WP_000203483.1 | hypothetical protein | - |
| A5960_RS26970 () | 45174..45365 | - | 192 | WP_000264906.1 | hypothetical protein | - |
| A5960_RS26975 () | 45375..45740 | - | 366 | WP_028985519.1 | hypothetical protein | - |
| A5960_RS26985 () | 45874..46083 | + | 210 | WP_062896385.1 | hypothetical protein | - |
| A5960_RS26990 () | 46246..50148 | - | 3903 | WP_047091594.1 | Serine protease EspP | VF |
| A5960_RS26995 () | 50645..51031 | - | 387 | WP_099528467.1 | thermonuclease family protein | - |
| A5960_RS27000 () | 51190..51867 | + | 678 | WP_099528468.1 | DNA-binding protein | - |
| A5960_RS27015 () | 52357..52677 | - | 321 | WP_099528469.1 | adenylate cyclase | - |
| A5960_RS27020 () | 52735..53898 | - | 1164 | Protein_60 | IS3 family transposase ISEc17 | Transposase |
| A5960_RS27025 () | 54308..55690 | + | 1383 | WP_157774584.1 | Adhesin YadA | VF |
| A5960_RS27030 () | 55941..56230 | + | 290 | Protein_62 | IS3 family transposase IS3F | Transposase |
| A5960_RS27035 () | 56434..56613 | + | 180 | Protein_63 | integrase core domain-containing protein | - |
| A5960_RS27045 () | 56921..59008 | + | 2088 | WP_028985399.1 | bifunctional siderophore receptor/adhesin Iha | - |
| A5960_RS27050 () | 59269..59691 | - | 423 | WP_028985400.1 | Exc2 family lipoprotein | - |
| A5960_RS27055 () | 59974..60489 | + | 516 | Protein_66 | IS91 family transposase IS91 | Transposase |
| A5960_RS27060 () | 60820..61059 | - | 240 | WP_000859018.1 | MarR family transcriptional regulator | - |
| A5960_RS27080 () | 62035..62892 | - | 858 | WP_028985401.1 | incFII family plasmid replication initiator RepA | - |
| A5960_RS27085 () | 62885..62959 | - | 75 | WP_062865987.1 | RepA leader peptide Tap | - |
| A5960_RS27090 () | 63195..63452 | - | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
| A5960_RS27095 () | 63736..63942 | - | 207 | WP_032186826.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 63929..63990 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 63929..63990 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 63929..63990 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 63929..63990 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| A5960_RS28600 () | 64165..64548 | - | 384 | Protein_72 | hypothetical protein | - |
| A5960_RS27110 () | 64651..65110 | - | 460 | Protein_73 | thermonuclease family protein | - |
| A5960_RS27115 () | 65853..66056 | - | 204 | WP_032295436.1 | hypothetical protein | - |
| A5960_RS27120 () | 66211..66768 | - | 558 | WP_028985402.1 | fertility inhibition protein FinO | - |
| A5960_RS27125 () | 66823..67569 | - | 747 | WP_028985403.1 | conjugal transfer pilus acetylase TraX | - |
| A5960_RS27130 () | 67589..72859 | - | 5271 | WP_028985404.1 | Multifunctional conjugation protein TraI | Relaxase |
| A5960_RS27135 () | 72859..75066 | - | 2208 | WP_099528470.1 | type IV conjugative transfer system coupling protein TraD | - |
| A5960_RS27140 () | 75122..75853 | - | 732 | WP_137538280.1 | hypothetical protein | - |
| A5960_RS27145 () | 76029..76817 | - | 789 | WP_028985425.1 | hypothetical protein | - |
| A5960_RS27150 () | 76985..77296 | + | 312 | WP_000522220.1 | heavy metal-binding domain-containing protein | - |
| A5960_RS27155 () | 77299..80118 | - | 2820 | WP_028985426.1 | conjugal transfer mating pair stabilization protein TraG | - |
| A5960_RS27160 () | 80115..81488 | - | 1374 | WP_000944332.1 | conjugal transfer protein TraH | - |
| A5960_RS27165 () | 81475..81900 | - | 426 | WP_071531748.1 | F-type conjugal transfer protein TrbF | - |
| A5960_RS27170 () | 81848..82195 | - | 348 | WP_071531747.1 | P-type conjugative transfer protein TrbJ | - |
| A5960_RS27175 () | 82125..82670 | - | 546 | WP_001457363.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| A5960_RS27180 () | 82657..82947 | - | 291 | WP_021521297.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| A5960_RS27190 () | 83343..83684 | - | 342 | WP_028985427.1 | conjugal transfer protein TrbA | - |
| A5960_RS27195 () | 83698..84441 | - | 744 | WP_137538282.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| A5960_RS27200 () | 84434..84691 | - | 258 | WP_000864354.1 | conjugal transfer protein TrbE | - |
| A5960_RS27205 () | 84705..86543 | - | 1839 | WP_099528476.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| A5960_RS27210 () | 86703..87083 | - | 381 | WP_028985429.1 | hypothetical protein | - |
| A5960_RS27215 () | 87080..87718 | - | 639 | WP_001562875.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| A5960_RS27220 () | 87911..88150 | + | 240 | WP_001066128.1 | hypothetical protein | - |
| A5960_RS27225 () | 88147..88326 | - | 180 | WP_032295480.1 | hypothetical protein | - |
| A5960_RS27230 () | 88347..88495 | - | 149 | Protein_96 | TraU family protein | - |
| A5960_RS27235 () | 88499..88876 | - | 378 | WP_001365598.1 | hypothetical protein | - |
| A5960_RS27245 () | 89673..90215 | - | 543 | WP_001365589.1 | hypothetical protein | - |
| A5960_RS27250 () | 90229..91221 | - | 993 | WP_000817328.1 | conjugal transfer pilus assembly protein TraU | - |
| A5960_RS27255 () | 91218..91850 | - | 633 | WP_044804161.1 | type-F conjugative transfer system protein TraW | - |
| A5960_RS27260 () | 91847..92233 | - | 387 | WP_028985434.1 | type-F conjugative transfer system protein TrbI | - |
| A5960_RS27265 () | 92230..94857 | - | 2628 | WP_028985435.1 | type IV secretion system protein TraC | - |
| A5960_RS27270 () | 95017..95238 | - | 222 | WP_001278980.1 | conjugal transfer protein TraR | - |
| A5960_RS27275 () | 95373..95888 | - | 516 | WP_099528473.1 | type IV conjugative transfer system lipoprotein TraV | - |
| A5960_RS27280 () | 95885..96136 | - | 252 | WP_001038336.1 | conjugal transfer protein TrbG | - |
| A5960_RS27285 () | 96129..96449 | - | 321 | WP_001057268.1 | conjugal transfer protein TrbD | - |
| A5960_RS27290 () | 96436..97023 | - | 588 | WP_000002895.1 | conjugal transfer protein TraP | - |
| A5960_RS27295 () | 97013..98443 | - | 1431 | WP_000146622.1 | conjugal transfer protein TraB | - |
| A5960_RS27300 () | 98443..99171 | - | 729 | WP_001385684.1 | type-F conjugative transfer system secretin TraK | - |
| A5960_RS27305 () | 99158..99724 | - | 567 | WP_000399758.1 | type IV conjugative transfer system protein TraE | - |
| A5960_RS27310 () | 99746..100057 | - | 312 | WP_000012120.1 | type IV conjugative transfer system protein TraL | - |
| A5960_RS27315 () | 100072..100425 | - | 354 | WP_021521309.1 | type IV conjugative transfer system pilin TraA | - |
| A5960_RS27320 () | 100460..100687 | - | 228 | WP_032142519.1 | conjugal transfer relaxosome protein TraY | - |
| A5960_RS27325 () | 100775..101464 | - | 690 | WP_028985437.1 | PAS domain-containing protein | - |
| A5960_RS27330 () | 101656..102039 | - | 384 | WP_021521311.1 | relaxosome protein TraM | - |
| A5960_RS27335 () | 102370..102972 | + | 603 | WP_077630563.1 | hypothetical protein | VF |
| A5960_RS27340 () | 103268..104089 | - | 822 | WP_028985438.1 | DUF945 domain-containing protein | - |
| A5960_RS27345 () | 104207..104494 | - | 288 | WP_000107526.1 | hypothetical protein | - |
| A5960_RS27355 () | 104650..104952 | - | 303 | WP_001272236.1 | hypothetical protein | - |
| A5960_RS28605 () | 105252..105549 | + | 298 | Protein_120 | hypothetical protein | - |
| A5960_RS27375 () | 105850..106011 | - | 162 | WP_000775238.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 106076..106270 | - | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 106076..106270 | - | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 106076..106270 | - | 195 | NuclAT_0 | - | Antitoxin Detail |
| - () | 106076..106270 | - | 195 | NuclAT_0 | - | Antitoxin Detail |
| A5960_RS27380 () | 106219..106533 | - | 315 | Protein_122 | theronine dehydrogenase | - |
| A5960_RS27385 () | 106530..107249 | - | 720 | WP_000116348.1 | plasmid SOS inhibition protein A | - |
| A5960_RS27390 () | 107246..107680 | - | 435 | WP_000845927.1 | conjugation system SOS inhibitor PsiB | - |
| A5960_RS27395 () | 107735..109693 | - | 1959 | WP_050864290.1 | ParB/RepB/Spo0J family partition protein | - |
| A5960_RS27400 () | 109758..109991 | - | 234 | WP_000005988.1 | DUF905 family protein | - |
| A5960_RS27410 () | 110049..110570 | - | 522 | WP_000290783.1 | single-stranded DNA-binding protein | - |
| A5960_RS28610 () | 111053..111463 | + | 411 | WP_198406611.1 | pilus protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|