MGE detailed information
MGE type: Mobilizable plasmid MGE length: 125877 bp
Accession: NZ_CP023827 Location: 1..125877 Organism: Escherichia coli strain 4/4 Replicon: plasmid p4_4.1
Accession: NZ_CP023827 Location: 1..125877 Organism: Escherichia coli strain 4/4 Replicon: plasmid p4_4.1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRT43_RS27775 () | 67..201 | - | 135 | Protein_2 | protein CopA/IncA | - |
| CRT43_RS25665 () | 307..441 | - | 135 | Protein_3 | replication protein A | - |
| CRT43_RS25670 () | 459..1156 | - | 698 | Protein_4 | IS1 family transposase | - |
| CRT43_RS25675 () | 1311..2291 | - | 981 | WP_000019450.1 | IS5-like element ISKpn26 family transposase | - |
| CRT43_RS25680 () | 2421..3164 | - | 744 | WP_001030401.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CRT43_RS25685 () | 3157..3414 | - | 258 | WP_000864347.1 | conjugal transfer protein TrbE | - |
| CRT43_RS25690 () | 3441..5291 | - | 1851 | WP_000821866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CRT43_RS25695 () | 5288..5926 | - | 639 | WP_001080259.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CRT43_RS25700 () | 5935..6240 | - | 306 | WP_000224413.1 | hypothetical protein | - |
| CRT43_RS25705 () | 6270..7262 | - | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
| CRT43_RS25710 () | 7259..7891 | - | 633 | WP_001203727.1 | type-F conjugative transfer system protein TraW | - |
| CRT43_RS25715 () | 7888..8274 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| CRT43_RS25720 () | 8271..10898 | - | 2628 | WP_001064258.1 | type IV secretion system protein TraC | - |
| CRT43_RS25725 () | 11058..11279 | - | 222 | WP_078207266.1 | conjugal transfer protein TraR | - |
| CRT43_RS25730 () | 11414..11929 | - | 516 | WP_000809886.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CRT43_RS25735 () | 11929..12288 | - | 360 | WP_001617876.1 | conjugal transfer protein TrbD | - |
| CRT43_RS25740 () | 12227..12814 | - | 588 | WP_013023871.1 | conjugal transfer protein TraP | - |
| CRT43_RS25745 () | 12783..14234 | - | 1452 | WP_000146687.1 | conjugal transfer protein TraB | - |
| CRT43_RS25750 () | 14234..14938 | - | 705 | WP_148725207.1 | type-F conjugative transfer system secretin TraK | - |
| CRT43_RS25755 () | 14949..15515 | - | 567 | WP_000399791.1 | type IV conjugative transfer system protein TraE | - |
| CRT43_RS25760 () | 15537..15848 | - | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| CRT43_RS25765 () | 15853..16215 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| CRT43_RS25770 () | 16249..16476 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| CRT43_RS25775 () | 16564..17241 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| CRT43_RS25780 () | 17375..17758 | - | 384 | WP_001151566.1 | relaxosome protein TraM | - |
| CRT43_RS25785 () | 18089..18691 | + | 603 | WP_000243712.1 | transglycosylase SLT domain-containing protein | - |
| CRT43_RS25790 () | 18988..19809 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CRT43_RS25795 () | 19928..20215 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| CRT43_RS27780 () | 20240..20446 | - | 207 | WP_000275859.1 | hypothetical protein | - |
| CRT43_RS27785 () | 20359..20694 | - | 336 | WP_013023876.1 | hypothetical protein | - |
| CRT43_RS25815 () | 21137..21295 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 21339..21379 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 21339..21379 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 21339..21379 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 21339..21379 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - () | 22823..23009 | - | 187 | NuclAT_0 | - | - |
| - () | 22823..23009 | - | 187 | NuclAT_0 | - | - |
| - () | 22823..23009 | - | 187 | NuclAT_0 | - | - |
| - () | 22823..23009 | - | 187 | NuclAT_0 | - | - |
| CRT43_RS25825 () | 23021..23740 | - | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| CRT43_RS25830 () | 23737..24171 | - | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| CRT43_RS25835 () | 24226..26184 | - | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| CRT43_RS25840 () | 26250..26483 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| CRT43_RS25845 () | 26546..27085 | - | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| CRT43_RS27790 () | 27230..27565 | - | 336 | WP_013023883.1 | hypothetical protein | - |
| CRT43_RS25870 () | 27728..27958 | - | 231 | WP_021526513.1 | hypothetical protein | - |
| CRT43_RS25875 () | 27984..28547 | - | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| CRT43_RS25880 () | 28595..29956 | - | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| CRT43_RS25885 () | 30008..30238 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| CRT43_RS25895 () | 31273..31464 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| CRT43_RS25900 () | 31461..31883 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| CRT43_RS25905 () | 31930..32232 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| CRT43_RS25915 () | 32772..33548 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| CRT43_RS25920 () | 33599..34033 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| CRT43_RS25925 () | 34047..34268 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| CRT43_RS25930 () | 34269..34952 | - | 684 | WP_000086185.1 | DNA methylase | - |
| CRT43_RS25935 () | 35029..35333 | - | 305 | Protein_51 | hypothetical protein | - |
| CRT43_RS25940 () | 35337..36239 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| CRT43_RS25955 () | 37106..38077 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CRT43_RS25960 () | 38077..39243 | - | 1167 | WP_000772446.1 | plasmid-partitioning protein SopA | - |
| CRT43_RS25965 () | 39831..40586 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| CRT43_RS25970 () | 41360..42166 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| CRT43_RS25975 () | 42167..42472 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CRT43_RS25980 () | 42474..42692 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CRT43_RS25985 () | 43400..44395 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| CRT43_RS25990 () | 44399..45331 | + | 933 | WP_000991832.1 | hypothetical protein | - |
| CRT43_RS25995 () | 45468..46165 | - | 698 | Protein_61 | IS1 family transposase | - |
| CRT43_RS26000 () | 46353..46574 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| CRT43_RS26005 () | 46574..46954 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| CRT43_RS26010 () | 46959..47138 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| CRT43_RS26015 () | 47166..47525 | + | 360 | WP_001513660.1 | hypothetical protein | - |
| CRT43_RS26020 () | 47449..47862 | + | 414 | Protein_66 | DDE-type integrase/transposase/recombinase | - |
| CRT43_RS26025 () | 47812..48129 | - | 318 | WP_001513659.1 | hypothetical protein | - |
| CRT43_RS26030 () | 48357..49337 | - | 981 | WP_000019407.1 | IS5-like element IS5 family transposase | - |
| CRT43_RS26035 () | 49581..50984 | + | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| CRT43_RS26040 () | 50971..51903 | + | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| CRT43_RS26045 () | 52012..52341 | - | 330 | Protein_71 | TOBE domain-containing protein | - |
| CRT43_RS26050 () | 52357..53054 | - | 698 | Protein_72 | IS1 family transposase | - |
| CRT43_RS26055 () | 53112..53360 | + | 249 | Protein_73 | abortive infection family protein | - |
| CRT43_RS26060 () | 53729..54460 | - | 732 | WP_001617898.1 | hypothetical protein | - |
| CRT43_RS26070 () | 55246..56223 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| CRT43_RS26075 () | 56508..57248 | - | 741 | WP_001066941.1 | tyrosine-type recombinase/integrase | - |
| CRT43_RS26080 () | 57369..57557 | - | 189 | WP_001309252.1 | hypothetical protein | - |
| CRT43_RS26085 () | 57924..59093 | + | 1170 | WP_001072358.1 | hypothetical protein | - |
| CRT43_RS26090 () | 59319..59494 | - | 176 | Protein_79 | IS3 family transposase | - |
| CRT43_RS26095 () | 59940..60212 | - | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| CRT43_RS26100 () | 60737..61173 | - | 437 | Protein_81 | transposase | - |
| CRT43_RS26105 () | 61455..63425 | + | 1971 | WP_001298664.1 | TonB-dependent hemoglobin/transferrin/lactoferrin family receptor | - |
| CRT43_RS26110 () | 63432..64223 | + | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| CRT43_RS26115 () | 64286..64894 | - | 609 | Protein_84 | IS66 family transposase | - |
| CRT43_RS26120 () | 64962..65744 | - | 783 | WP_001300609.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
| CRT43_RS26125 () | 65741..66763 | - | 1023 | WP_001310017.1 | IS21-like element IS100 family transposase | - |
| CRT43_RS26130 () | 66849..67794 | - | 946 | Protein_87 | IS66 family transposase | - |
| CRT43_RS26135 () | 67843..68190 | - | 348 | WP_000612626.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CRT43_RS26140 () | 68187..68591 | - | 405 | WP_000839179.1 | IS66 family insertion sequence hypothetical protein | - |
| CRT43_RS26145 () | 68620..69003 | - | 384 | Protein_90 | DDE-type integrase/transposase/recombinase | - |
| CRT43_RS26150 () | 69093..70601 | - | 1509 | WP_001189113.1 | group II intron reverse transcriptase/maturase | - |
| CRT43_RS26160 () | 71274..72013 | - | 740 | Protein_92 | IS3 family transposase | - |
| CRT43_RS26165 () | 72039..72344 | + | 306 | Protein_93 | IS91 family transposase | - |
| CRT43_RS26170 () | 72867..74042 | - | 1176 | WP_001020413.1 | enterotoxin production-related protein TieB | - |
| CRT43_RS26180 () | 74111..76372 | - | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| CRT43_RS26185 () | 76541..77317 | - | 777 | WP_000981091.1 | energy transducer TonB | - |
| CRT43_RS26190 () | 77325..78200 | - | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| CRT43_RS26195 () | 78532..79079 | - | 548 | Protein_98 | primase alpha helix C-terminal domain-containing protein | - |
| CRT43_RS26220 () | 80651..80986 | - | 336 | WP_001080732.1 | colicin transporter | - |
| CRT43_RS26225 () | 81115..81462 | + | 348 | WP_000142452.1 | hypothetical protein | - |
| CRT43_RS26230 () | 81482..81991 | - | 510 | WP_000194542.1 | hypothetical protein | - |
| CRT43_RS26235 () | 81988..82248 | - | 261 | WP_000371882.1 | hypothetical protein | - |
| CRT43_RS26240 () | 82350..83089 | + | 740 | Protein_103 | IS3 family transposase | - |
| CRT43_RS27795 () | 83762..84076 | + | 315 | Protein_104 | hypothetical protein | - |
| CRT43_RS27800 () | 84077..84250 | + | 174 | Protein_105 | transposase | - |
| CRT43_RS26255 () | 84400..85033 | - | 634 | Protein_106 | histidine-type phosphatase | - |
| CRT43_RS26260 () | 85155..85640 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| CRT43_RS26265 () | 85665..86150 | - | 486 | WP_001267176.1 | TlpA family protein disulfide reductase | - |
| CRT43_RS26270 () | 86137..86832 | - | 696 | WP_000117262.1 | ABC transporter ATP-binding protein | - |
| CRT43_RS26275 () | 86837..87967 | - | 1131 | WP_000729218.1 | ABC transporter permease | - |
| CRT43_RS26280 () | 87957..89240 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| CRT43_RS26285 () | 89243..90622 | - | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| CRT43_RS26290 () | 90726..91253 | - | 528 | WP_000178050.1 | iron transporter | - |
| CRT43_RS26295 () | 91294..93180 | - | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| CRT43_RS26305 () | 93527..94342 | - | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| CRT43_RS26310 () | 94525..95031 | - | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| CRT43_RS26315 () | 95021..95179 | - | 159 | WP_000449408.1 | DsbA family protein | - |
| CRT43_RS27805 () | 95329..95442 | - | 114 | Protein_118 | IS6 family transposase | - |
| CRT43_RS26330 () | 95642..96339 | + | 698 | Protein_119 | IS1 family transposase | - |
| CRT43_RS26335 () | 96354..96572 | + | 219 | Protein_120 | IS4 family transposase | - |
| CRT43_RS26340 () | 96622..97326 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| CRT43_RS26345 () | 97385..98134 | - | 750 | Protein_122 | class 1 integron integrase IntI1 | - |
| CRT43_RS26350 () | 98292..98765 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| CRT43_RS26355 () | 98896..99684 | + | 789 | WP_000503573.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5 | - |
| CRT43_RS26360 () | 99890..100237 | + | 348 | WP_000679427.1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | - |
| CRT43_RS26365 () | 100231..101070 | + | 840 | WP_000259031.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | - |
| CRT43_RS26375 () | 101198..101401 | + | 204 | WP_000376616.1 | hypothetical protein | - |
| CRT43_RS26380 () | 101557..102762 | + | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| CRT43_RS26385 () | 102773..103078 | + | 306 | WP_000130000.1 | PadR family transcriptional regulator | - |
| CRT43_RS27630 () | 103122..103187 | + | 66 | Protein_130 | EAL domain-containing protein | - |
| CRT43_RS26395 () | 103305..104069 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| CRT43_RS26410 () | 104562..105146 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| CRT43_RS26415 () | 105146..106384 | - | 1239 | WP_000004159.1 | MFS transporter | - |
| CRT43_RS26420 () | 106381..107286 | - | 906 | WP_000219391.1 | Mph(A) family macrolide 2'-phosphotransferase | - |
| CRT43_RS26430 () | 107408..108112 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| CRT43_RS26435 () | 108173..108349 | + | 177 | Protein_136 | replication protein C | - |
| CRT43_RS26445 () | 108657..109472 | + | 816 | WP_001043260.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | - |
| CRT43_RS26450 () | 109533..110336 | + | 804 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | - |
| CRT43_RS26455 () | 110336..111172 | + | 837 | WP_000480972.1 | aminoglycoside O-phosphotransferase APH(6)-Id | - |
| CRT43_RS26460 () | 111226..111462 | + | 237 | WP_042005022.1 | hypothetical protein | - |
| CRT43_RS26465 () | 111494..112120 | - | 627 | WP_031606906.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| CRT43_RS26470 () | 112226..113425 | + | 1200 | WP_000804064.1 | tetracycline efflux MFS transporter Tet(A) | - |
| CRT43_RS26475 () | 113457..114317 | - | 861 | WP_000493383.1 | EamA family transporter | - |
| CRT43_RS26480 () | 114326..114832 | - | 507 | Protein_144 | transposase | - |
| CRT43_RS26490 () | 114885..115589 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| CRT43_RS26495 () | 115650..116522 | + | 873 | Protein_146 | TonB-dependent receptor | - |
| CRT43_RS26500 () | 116590..116979 | - | 390 | Protein_147 | DUF4158 domain-containing protein | - |
| CRT43_RS26505 () | 117143..117247 | + | 105 | Protein_148 | recombinase family protein | - |
| CRT43_RS26510 () | 117311..118015 | + | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| CRT43_RS26515 () | 118067..118303 | - | 237 | Protein_150 | TonB-dependent siderophore receptor | - |
| CRT43_RS26520 () | 118360..119328 | - | 969 | WP_013362812.1 | IS5-like element IS903B family transposase | - |
| CRT43_RS26525 () | 119363..120238 | - | 876 | WP_032277257.1 | class A extended-spectrum beta-lactamase CTX-M-27 | - |
| CRT43_RS26530 () | 120488..120667 | - | 180 | Protein_153 | IS1380 family transposase | - |
| CRT43_RS26535 () | 120732..121436 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| CRT43_RS26540 () | 121502..122047 | + | 546 | Protein_155 | Tn3 family transposase | - |
| CRT43_RS26545 () | 122083..122498 | - | 416 | Protein_156 | IS1 family transposase | - |
| CRT43_RS26550 () | 122747..123148 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CRT43_RS26555 () | 123081..123338 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CRT43_RS26560 () | 123431..124084 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|