MGE detailed information
MGE type: Conjugative plasmid MGE length: 145883 bp
Accession: NZ_CP023816 Location: 1..145883 Organism: Escherichia coli strain IMT16316 Replicon: plasmid pEcIMT16316
Accession: NZ_CP023816 Location: 1..145883 Organism: Escherichia coli strain IMT16316 Replicon: plasmid pEcIMT16316
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CRI72_RS25000 () | 1..198 | - | 198 | Protein_0 | IS5/IS1182 family transposase | - |
| CRI72_RS25005 () | 328..1071 | - | 744 | WP_001030401.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CRI72_RS25010 () | 1064..1321 | - | 258 | WP_000864347.1 | conjugal transfer protein TrbE | - |
| CRI72_RS25015 () | 1348..3198 | - | 1851 | WP_000821866.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CRI72_RS25020 () | 3195..3755 | - | 561 | Protein_4 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CRI72_RS25025 () | 3812..4509 | + | 698 | Protein_5 | IS1 family transposase IS1G | Transposase |
| CRI72_RS26420 () | 4524..4610 | - | 87 | Protein_6 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CRI72_RS25035 () | 4619..4924 | - | 306 | WP_000224413.1 | hypothetical protein | - |
| CRI72_RS25040 () | 4954..5946 | - | 993 | WP_000830190.1 | conjugal transfer pilus assembly protein TraU | - |
| CRI72_RS25045 () | 5943..6575 | - | 633 | WP_001203727.1 | type-F conjugative transfer system protein TraW | - |
| CRI72_RS25050 () | 6572..6958 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| CRI72_RS25055 () | 6955..9582 | - | 2628 | WP_001064258.1 | type IV secretion system protein TraC | - |
| CRI72_RS25060 () | 9742..9963 | - | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| CRI72_RS25065 () | 10098..10613 | - | 516 | WP_000809886.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CRI72_RS25070 () | 10613..10972 | - | 360 | WP_001617876.1 | conjugal transfer protein TrbD | - |
| CRI72_RS25075 () | 10911..11498 | - | 588 | WP_071587349.1 | conjugal transfer protein TraP | - |
| CRI72_RS25080 () | 11467..12918 | - | 1452 | WP_000146687.1 | conjugal transfer protein TraB | - |
| CRI72_RS25085 () | 12918..13622 | - | 705 | WP_148725207.1 | type-F conjugative transfer system secretin TraK | - |
| CRI72_RS25090 () | 13633..14199 | - | 567 | WP_000399791.1 | type IV conjugative transfer system protein TraE | - |
| CRI72_RS25095 () | 14221..14532 | - | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| CRI72_RS25100 () | 14537..14899 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| CRI72_RS25105 () | 14933..15160 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| CRI72_RS25110 () | 15248..15925 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| CRI72_RS25115 () | 16059..16442 | - | 384 | WP_001151566.1 | relaxosome protein TraM | - |
| CRI72_RS25120 () | 16773..17375 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| CRI72_RS25125 () | 17672..18493 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| CRI72_RS25130 () | 18612..18899 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| CRI72_RS26425 () | 18924..19130 | - | 207 | WP_000275859.1 | hypothetical protein | - |
| CRI72_RS26430 () | 19043..19378 | - | 336 | WP_013023876.1 | hypothetical protein | - |
| CRI72_RS25145 () | 19821..19979 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 20023..20061 | - | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 20023..20061 | - | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 20023..20061 | - | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 20023..20061 | - | 39 | NuclAT_1 | - | Antitoxin Detail |
| - () | 21501..21603 | - | 103 | NuclAT_0 | - | - |
| - () | 21501..21603 | - | 103 | NuclAT_0 | - | - |
| - () | 21501..21603 | - | 103 | NuclAT_0 | - | - |
| - () | 21501..21603 | - | 103 | NuclAT_0 | - | - |
| CRI72_RS25155 () | 21615..22334 | - | 720 | WP_001276232.1 | plasmid SOS inhibition protein A | - |
| CRI72_RS25160 () | 22331..22765 | - | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| CRI72_RS25165 () | 22820..24778 | - | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| CRI72_RS25170 () | 24844..25077 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| CRI72_RS25175 () | 25140..25637 | - | 498 | WP_042045560.1 | single-stranded DNA-binding protein | - |
| CRI72_RS25180 () | 25787..27688 | - | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| CRI72_RS26435 () | 28485..28820 | - | 336 | WP_013023883.1 | hypothetical protein | - |
| CRI72_RS25205 () | 28983..29195 | - | 213 | WP_001348622.1 | hypothetical protein | - |
| CRI72_RS25210 () | 29221..29784 | - | 564 | WP_001348621.1 | class I SAM-dependent methyltransferase | - |
| CRI72_RS25215 () | 29831..31192 | - | 1362 | WP_000170714.1 | DUF3560 domain-containing protein | - |
| CRI72_RS25220 () | 31244..31474 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| CRI72_RS25235 () | 32509..32700 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| CRI72_RS25240 () | 32697..33119 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| CRI72_RS25245 () | 33166..33468 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| CRI72_RS26325 () | 34008..34784 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| CRI72_RS25260 () | 34835..35269 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| CRI72_RS25265 () | 35283..35504 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| CRI72_RS25270 () | 35505..36188 | - | 684 | WP_000086185.1 | DNA methylase | - |
| CRI72_RS25275 () | 36265..36569 | - | 305 | Protein_49 | hypothetical protein | - |
| CRI72_RS25280 () | 36573..37475 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| CRI72_RS25295 () | 38342..39313 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| CRI72_RS25300 () | 39313..40479 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| CRI72_RS25305 () | 41067..41822 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| CRI72_RS25310 () | 42596..43402 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| CRI72_RS25315 () | 43403..43708 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CRI72_RS25320 () | 43710..43928 | - | 219 | WP_023909027.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| CRI72_RS25330 () | 44561..44758 | + | 198 | WP_000215657.1 | hypothetical protein | - |
| CRI72_RS25335 () | 44755..45039 | - | 285 | WP_000642771.1 | hypothetical protein | - |
| CRI72_RS25340 () | 45059..46192 | - | 1134 | WP_000545983.1 | DUF3800 domain-containing protein | - |
| CRI72_RS25345 () | 46455..49574 | - | 3120 | WP_023909028.1 | hypothetical protein | - |
| CRI72_RS25355 () | 49881..50111 | + | 231 | WP_001261287.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| CRI72_RS25360 () | 50108..50524 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CRI72_RS25365 () | 50686..52824 | - | 2139 | WP_000350635.1 | AAA family ATPase | - |
| CRI72_RS25370 () | 53289..54284 | + | 996 | WP_000246636.1 | hypothetical protein | - |
| CRI72_RS25375 () | 54288..55220 | + | 933 | WP_000991832.1 | hypothetical protein | - |
| CRI72_RS25380 () | 55357..56054 | - | 698 | Protein_66 | IS1 family transposase IS1G | Transposase |
| CRI72_RS25390 () | 56268..59384 | - | 3117 | WP_031311986.1 | HsdR family type I site-specific deoxyribonuclease | - |
| CRI72_RS25395 () | 59506..60789 | - | 1284 | WP_001617890.1 | restriction endonuclease subunit S | - |
| CRI72_RS25400 () | 60786..62342 | - | 1557 | WP_001553856.1 | type I restriction-modification system subunit M | - |
| CRI72_RS25405 () | 62525..62746 | + | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| CRI72_RS25410 () | 62746..63126 | + | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin Detail |
| CRI72_RS25415 () | 63131..63310 | + | 180 | WP_001513661.1 | hypothetical protein | - |
| CRI72_RS25420 () | 63338..63697 | + | 360 | WP_001513660.1 | hypothetical protein | - |
| CRI72_RS25425 () | 63621..64034 | + | 414 | Protein_74 | IS3 family transposase ISLad1 | Transposase |
| CRI72_RS25435 () | 64830..65807 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| CRI72_RS25440 () | 66092..66832 | - | 741 | WP_001066942.1 | tyrosine-type recombinase/integrase | - |
| CRI72_RS25445 () | 66953..67135 | - | 183 | WP_042065278.1 | hypothetical protein | - |
| CRI72_RS25455 () | 67478..67785 | - | 308 | Protein_78 | type II toxin-antitoxin system ParD family antitoxin | - |
| CRI72_RS25465 () | 68278..69447 | + | 1170 | WP_001072355.1 | hypothetical protein | - |
| CRI72_RS25470 () | 69480..69608 | + | 129 | Protein_80 | IS481 family transposase | - |
| CRI72_RS25475 () | 69643..69837 | - | 195 | WP_086258557.1 | hypothetical protein | - |
| CRI72_RS25485 () | 69879..70576 | + | 698 | Protein_82 | IS1 family transposase IS1R | Transposase |
| CRI72_RS25490 () | 70592..70711 | + | 120 | Protein_83 | ArsR family transcriptional regulator | - |
| CRI72_RS25495 () | 70689..71312 | - | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| CRI72_RS25500 () | 71394..72599 | + | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| CRI72_RS25505 () | 72712..73305 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| CRI72_RS25510 () | 73438..73809 | + | 372 | WP_035689358.1 | Transposon Tn10 TetD protein | VF |
| CRI72_RS25515 () | 73819..74340 | - | 522 | Protein_88 | IS4 family transposase IS10R | Transposase |
| CRI72_RS25520 () | 74347..74535 | - | 189 | Protein_89 | IS1 family transposase | - |
| CRI72_RS25530 () | 74600..75304 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CRI72_RS26440 () | 75665..75951 | + | 287 | Protein_91 | DUF2726 domain-containing protein | - |
| - () | 75918..75978 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 75918..75978 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 75918..75978 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| - () | 75918..75978 | - | 61 | NuclAT_2 | - | Antitoxin Detail |
| CRI72_RS25545 () | 76023..76157 | + | 135 | WP_023144756.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| CRI72_RS25550 () | 76454..76708 | + | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| CRI72_RS25555 () | 76868..77614 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| CRI72_RS25560 () | 77629..79170 | - | 1542 | WP_002431311.1 | IS21 family transposase ISEc12 | Transposase |
| CRI72_RS26445 () | 79401..79535 | + | 135 | Protein_96 | protein CopA/IncA | - |
| CRI72_RS25570 () | 79532..79606 | + | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| CRI72_RS25575 () | 79599..80456 | + | 858 | WP_000130640.1 | incFII family plasmid replication initiator RepA | - |
| CRI72_RS25585 () | 81396..82049 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| CRI72_RS26330 () | 82142..82399 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| CRI72_RS25590 () | 82332..82733 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| CRI72_RS25595 () | 82870..85767 | - | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| CRI72_RS25600 () | 85862..86467 | + | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| CRI72_RS25605 () | 86491..87240 | - | 750 | Protein_104 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| CRI72_RS25610 () | 87229..87636 | + | 408 | WP_001214976.1 | cysteine hydrolase | - |
| CRI72_RS25615 () | 87774..88658 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| CRI72_RS25620 () | 88690..89889 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| CRI72_RS25625 () | 89995..90645 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| CRI72_RS25630 () | 90677..90919 | - | 243 | WP_032140899.1 | hypothetical protein | - |
| CRI72_RS25635 () | 90961..92475 | - | 1515 | Protein_110 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| CRI72_RS25640 () | 92541..93245 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CRI72_RS25650 () | 93279..93521 | - | 243 | WP_098944979.1 | class A beta-lactamase | - |
| CRI72_RS25655 () | 93704..94261 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| CRI72_RS25660 () | 94425..94637 | + | 213 | Protein_114 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CRI72_RS25665 () | 94825..95538 | + | 714 | Protein_115 | IS1380 family transposase ISEcp1 | Transposase |
| CRI72_RS25675 () | 95590..96294 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CRI72_RS25680 () | 96358..96696 | + | 339 | Protein_117 | recombinase family protein | - |
| CRI72_RS25685 () | 96879..97739 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| CRI72_RS25690 () | 97886..98167 | + | 282 | Protein_119 | transposase zinc-binding domain-containing protein | - |
| CRI72_RS25695 () | 98326..99030 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CRI72_RS25705 () | 99152..100057 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| CRI72_RS25710 () | 100054..101292 | + | 1239 | WP_000004159.1 | MFS transporter | - |
| CRI72_RS25715 () | 101292..101876 | + | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| CRI72_RS25725 () | 102369..103133 | - | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| CRI72_RS26450 () | 103251..103316 | - | 66 | Protein_125 | EAL domain-containing protein | - |
| CRI72_RS25735 () | 103360..103665 | - | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| CRI72_RS25740 () | 103676..104881 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| CRI72_RS25745 () | 105037..105240 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| CRI72_RS25755 () | 105368..106207 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| CRI72_RS25760 () | 106201..106548 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| CRI72_RS25765 () | 106754..107542 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| CRI72_RS25770 () | 107673..108146 | - | 474 | WP_001389366.1 | Dihydrofolate reductase type 1 | ARG |
| CRI72_RS25775 () | 108304..109317 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| CRI72_RS26455 () | 109520..109666 | + | 147 | Protein_134 | EAL domain-containing protein | - |
| CRI72_RS25790 () | 109719..110423 | - | 705 | Protein_135 | IS6 family transposase IS15DII | Transposase |
| CRI72_RS25795 () | 110488..112731 | - | 2244 | Protein_136 | Tn3 family transposase TnpA_Tn3 | Transposase |
| CRI72_RS25800 () | 112745..113077 | + | 333 | WP_001393253.1 | WbuC family cupin fold metalloprotein | - |
| CRI72_RS25805 () | 113124..113999 | - | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| CRI72_RS25810 () | 114255..114812 | - | 558 | Protein_139 | IS1380-like element ISEc9 family transposase | - |
| CRI72_RS25815 () | 114876..115580 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CRI72_RS25825 () | 115641..116477 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| CRI72_RS25830 () | 116477..117280 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| CRI72_RS25835 () | 117341..118156 | - | 816 | WP_001043265.1 | Dihydropteroate synthase | ARG |
| CRI72_RS25845 () | 118463..119095 | - | 633 | Protein_144 | replication protein C | - |
| CRI72_RS25850 () | 119159..119863 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CRI72_RS25855 () | 119912..120817 | - | 906 | Protein_146 | IS4 family transposase IS10R | Transposase |
| CRI72_RS25865 () | 120927..121889 | - | 963 | Protein_147 | IS4 family transposase IS10R | Transposase |
| CRI72_RS25870 () | 122032..122892 | + | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| CRI72_RS25875 () | 122905..123447 | + | 543 | WP_000587837.1 | AAA family ATPase | - |
| CRI72_RS25880 () | 123928..124119 | - | 192 | WP_000951934.1 | hypothetical protein | - |
| CRI72_RS25885 () | 124143..124370 | + | 228 | WP_000248278.1 | hypothetical protein | - |
| CRI72_RS25890 () | 124421..125548 | + | 1128 | WP_014837927.1 | DUF3883 domain-containing protein | - |
| CRI72_RS25895 () | 125585..126289 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CRI72_RS25905 () | 126339..127058 | + | 720 | Protein_154 | AAA family ATPase | - |
| CRI72_RS25910 () | 127045..127275 | + | 231 | Protein_155 | replication protein C | - |
| CRI72_RS25920 () | 127324..128028 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| CRI72_RS25930 () | 128129..128341 | - | 213 | WP_013023861.1 | hypothetical protein | - |
| CRI72_RS25935 () | 128472..129032 | - | 561 | WP_000139341.1 | fertility inhibition protein FinO | - |
| CRI72_RS25940 () | 129087..129833 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| CRI72_RS25945 () | 129853..135122 | - | 5270 | Protein_160 | Multifunctional conjugation protein TraI | Relaxase |
| CRI72_RS25950 () | 135122..137311 | - | 2190 | WP_024946705.1 | type IV conjugative transfer system coupling protein TraD | - |
| CRI72_RS25955 () | 137308..138087 | - | 780 | WP_000199914.1 | hypothetical protein | - |
| CRI72_RS25960 () | 138290..139021 | - | 732 | WP_000850429.1 | complement resistance protein TraT | - |
| CRI72_RS25965 () | 139053..139549 | - | 497 | Protein_164 | entry exclusion protein | - |
| CRI72_RS25970 () | 139568..142387 | - | 2820 | WP_001007062.1 | conjugal transfer mating pair stabilization protein TraG | - |
| CRI72_RS25975 () | 142384..143757 | - | 1374 | WP_000944328.1 | conjugal transfer protein TraH | - |
| CRI72_RS25980 () | 143744..144169 | - | 426 | WP_001348758.1 | F-type conjugal transfer protein TrbF | - |
| CRI72_RS25985 () | 144117..144464 | - | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| CRI72_RS25990 () | 144394..144939 | - | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CRI72_RS25995 () | 144926..145210 | - | 285 | WP_001617873.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CRI72_RS26000 () | 145337..145657 | - | 321 | WP_001348757.1 | conjugal transfer protein TrbA | - |
| CRI72_RS26005 () | 145705..145872 | - | 168 | Protein_172 | IS1 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|