MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 144194 bp
Accession: NZ_CP020343 Location: 1..144194 Organism: Shigella flexneri 1a strain 0439 Replicon: plasmid unnamed1
Accession: NZ_CP020343 Location: 1..144194 Organism: Shigella flexneri 1a strain 0439 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BS647_RS25430 | 210..581 | - | 372 | Protein_0 | integrase core domain-containing protein | - |
BS647_RS25440 | 825..944 | + | 120 | Protein_1 | Tn3 family transposase TnpA_ISNpu13 | Transposase |
BS647_RS25445 (BS647_25560) | 1194..2060 | + | 867 | WP_001046939.1 | hypothetical protein | VF |
BS647_RS25450 (BS647_25565) | 2389..3129 | + | 741 | WP_000850662.1 | PAP2 family phosphatase PhoN2 | - |
BS647_RS28000 | 3482..4936 | - | 1455 | Protein_4 | hypothetical protein | VF |
BS647_RS25465 (BS647_25575) | 5303..5821 | - | 519 | Protein_5 | IS66 family transposase IS679 | Transposase |
BS647_RS25470 (BS647_25580) | 5838..6074 | - | 237 | Protein_6 | IS3 family transposase ISSfl11 | Transposase |
BS647_RS25475 (BS647_25585) | 6125..7281 | - | 1157 | Protein_7 | IS3 family transposase IS600 | Transposase |
BS647_RS25480 (BS647_25590) | 7453..9162 | - | 1710 | WP_005061014.1 | hypothetical protein | VF |
BS647_RS25485 (BS647_25595) | 9594..10313 | - | 720 | WP_001121867.1 | Phosphothreonine lyase OspF | VF |
BS647_RS25490 (BS647_25600) | 10438..10994 | - | 557 | Protein_10 | ISL3 family transposase ISKox3 | Transposase |
BS647_RS25495 (BS647_25605) | 10978..11236 | + | 259 | Protein_11 | IS1 family transposase | - |
BS647_RS25500 (BS647_25610) | 11345..11923 | - | 579 | WP_000868563.1 | hypothetical protein | - |
BS647_RS28635 | 11972..12230 | - | 259 | Protein_13 | integrase core domain-containing protein | - |
BS647_RS25505 (BS647_25615) | 12344..12581 | - | 238 | Protein_14 | IS21 family transposase IS21 | Transposase |
BS647_RS25510 (BS647_25620) | 12768..13197 | - | 430 | Protein_15 | IS91 family transposase IS91 | Transposase |
BS647_RS28005 | 13275..13562 | + | 288 | WP_001082155.1 | hypothetical protein | - |
BS647_RS25525 (BS647_25635) | 13593..13874 | + | 282 | Protein_17 | IS66 family transposase ISCro1 | Transposase |
BS647_RS25530 (BS647_25640) | 13888..15234 | - | 1347 | WP_011587243.1 | IS4 family transposase IS4 | Transposase |
BS647_RS25535 (BS647_25645) | 15304..15678 | + | 375 | Protein_19 | IS66 family transposase ISCro1 | Transposase |
BS647_RS25540 (BS647_25650) | 15678..16025 | + | 348 | WP_000622998.1 | IS66 family transposase ISCro1 | Transposase |
BS647_RS25545 (BS647_25655) | 16045..17274 | + | 1230 | Protein_21 | IS66 family transposase IS679 | Transposase |
BS647_RS25550 | 17278..17437 | + | 160 | Protein_22 | integrase core domain-containing protein | - |
BS647_RS28640 | 17680..17772 | - | 93 | Protein_23 | type III effector | - |
BS647_RS25555 (BS647_25665) | 18026..18324 | + | 299 | Protein_24 | IS256 family transposase IS1414 | Transposase |
BS647_RS27590 | 18406..18543 | + | 138 | Protein_25 | IS630 family transposase | - |
BS647_RS25560 (BS647_25675) | 18915..19592 | + | 678 | WP_000026470.1 | hypothetical protein | VF |
BS647_RS28010 | 19916..20026 | + | 111 | Protein_27 | IS3 family transposase | - |
BS647_RS28015 | 20104..20418 | + | 315 | WP_011114726.1 | hypothetical protein | - |
BS647_RS25575 (BS647_25690) | 20700..21266 | + | 567 | WP_000901798.1 | hypothetical protein | VF |
BS647_RS28645 (BS647_25700) | 21528..21650 | - | 123 | Protein_30 | transposase domain-containing protein | - |
BS647_RS25590 (BS647_25705) | 21793..22347 | + | 555 | Protein_31 | IS3 family transposase IS3H | Transposase |
BS647_RS25595 (BS647_25710) | 22686..23047 | + | 362 | Protein_32 | IS1 family transposase IS1N | Transposase |
BS647_RS25605 (BS647_25715) | 23134..23811 | + | 678 | Protein_33 | IS21 family transposase IS100kyp | Transposase |
BS647_RS25610 (BS647_25720) | 23837..25030 | - | 1194 | WP_005064872.1 | IS4 family transposase ISSfl1 | Transposase |
BS647_RS25620 (BS647_25730) | 25110..25466 | + | 357 | Protein_35 | IS21 family transposase IS100kyp | Transposase |
BS647_RS25625 (BS647_25735) | 25463..26245 | + | 783 | WP_011114728.1 | IS21 family transposase IS100kyp | Transposase |
BS647_RS25630 (BS647_25740) | 26312..26650 | + | 339 | Protein_37 | IS1 family transposase | - |
BS647_RS28650 (BS647_25745) | 26664..26798 | + | 135 | Protein_38 | hypothetical protein | - |
BS647_RS25640 (BS647_25750) | 26972..28171 | + | 1200 | WP_000200287.1 | AAA family ATPase | - |
BS647_RS25645 (BS647_25755) | 28171..29151 | + | 981 | WP_000431558.1 | ParB family protein | - |
BS647_RS25650 (BS647_25760) | 29407..29892 | + | 486 | WP_025760655.1 | IS110 family transposase ISPpr8 | Transposase |
BS647_RS25655 (BS647_25765) | 29919..30098 | - | 180 | Protein_42 | transposase domain-containing protein | - |
BS647_RS25660 (BS647_25770) | 30181..31308 | - | 1128 | WP_014526552.1 | group II intron reverse transcriptase/maturase | - |
BS647_RS28655 | 31230..31568 | + | 339 | WP_227804374.1 | hypothetical protein | - |
BS647_RS25670 (BS647_25780) | 31884..32063 | - | 180 | Protein_45 | IS66 family transposase | - |
BS647_RS25675 (BS647_25785) | 32100..33309 | - | 1210 | Protein_46 | IS3 family transposase | - |
BS647_RS25680 | 33366..33662 | - | 297 | Protein_47 | IS3 family transposase IS150 | Transposase |
BS647_RS25685 (BS647_25795) | 33778..33966 | + | 189 | WP_000957853.1 | hypothetical protein | - |
BS647_RS25690 (BS647_25800) | 33976..35174 | + | 1199 | WP_094081567.1 | IS91 family transposase ISSbo1 | Transposase |
BS647_RS25695 (BS647_25805) | 35347..36101 | - | 755 | Protein_50 | IS3 family transposase IS150 | Transposase |
BS647_RS25700 (BS647_25810) | 36112..36471 | + | 360 | Protein_51 | IS21 family transposase IS100 | Transposase |
BS647_RS25705 (BS647_25815) | 36464..37252 | - | 789 | WP_005116773.1 | AraC family invasion system transcriptional regulator VirF | - |
BS647_RS25710 (BS647_25820) | 37681..38082 | + | 402 | Protein_53 | integrase core domain-containing protein | - |
BS647_RS25715 (BS647_25825) | 38264..38530 | + | 267 | WP_000957712.1 | hypothetical protein | VF |
BS647_RS25720 (BS647_25830) | 38720..39417 | + | 698 | WP_227804301.1 | IS1 family transposase IS1X2 | Transposase |
BS647_RS25725 (BS647_25835) | 39678..40874 | - | 1197 | WP_005085088.1 | IS110 family transposase ISSfl4 | Transposase |
BS647_RS25730 (BS647_25840) | 41210..42901 | + | 1692 | WP_000597733.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
BS647_RS25735 (BS647_25845) | 42953..44161 | + | 1209 | Protein_58 | IS3 family transposase | - |
BS647_RS25740 (BS647_25850) | 44204..44727 | - | 524 | Protein_59 | IS3 family transposase ISSfl11 | Transposase |
BS647_RS25745 (BS647_25855) | 44795..45277 | - | 483 | WP_000405245.1 | GNAT family N-acetyltransferase | Toxin Detail |
BS647_RS25750 (BS647_25860) | 45268..45570 | - | 303 | WP_010921625.1 | DUF1778 domain-containing protein | Antitoxin Detail |
BS647_RS25760 (BS647_25870) | 45842..46114 | + | 273 | WP_000019158.1 | hypothetical protein | - |
BS647_RS25765 (BS647_25875) | 46095..47303 | + | 1209 | WP_000198552.1 | IS91 family transposase ISSbo1 | Transposase |
BS647_RS28020 | 47475..47603 | + | 129 | Protein_64 | IS5/IS1182 family transposase | - |
BS647_RS25775 (BS647_25885) | 47752..49206 | - | 1455 | WP_000701108.1 | hypothetical protein | VF |
BS647_RS25780 (BS647_25890) | 49610..50229 | + | 620 | Protein_66 | IS1 family transposase IS1X2 | Transposase |
BS647_RS25785 (BS647_25895) | 50279..51488 | + | 1210 | Protein_67 | IS3 family transposase | - |
BS647_RS25790 (BS647_25900) | 51532..51942 | + | 411 | Protein_68 | IS66 family transposase ISEc23 | Transposase |
BS647_RS25795 (BS647_25905) | 51974..52588 | + | 615 | Protein_69 | IS21 family transposase ISEc10 | Transposase |
BS647_RS25800 (BS647_25910) | 52757..56851 | - | 4095 | WP_001034121.1 | Serine protease SepA autotransporter | VF |
BS647_RS25810 (BS647_25920) | 57253..57441 | + | 189 | WP_000957853.1 | hypothetical protein | - |
BS647_RS25815 (BS647_25925) | 57451..58649 | + | 1199 | WP_094081567.1 | IS91 family transposase ISSbo1 | Transposase |
BS647_RS25820 | 58818..59324 | - | 507 | Protein_73 | IS3 family transposase | - |
BS647_RS25825 (BS647_25940) | 59387..59791 | - | 405 | WP_011114759.1 | hypothetical protein | - |
BS647_RS28660 | 59981..60109 | - | 129 | Protein_75 | IS630 family transposase | - |
BS647_RS28025 (BS647_25945) | 60343..61059 | - | 717 | WP_011114760.1 | hypothetical protein | - |
BS647_RS25840 | 61643..62043 | - | 401 | Protein_77 | transposase | - |
BS647_RS25845 (BS647_25960) | 62076..62530 | - | 455 | Protein_78 | ISL3 family transposase ISKox3 | Transposase |
BS647_RS25850 (BS647_25965) | 62583..63793 | + | 1211 | Protein_79 | IS3 family transposase | - |
BS647_RS25860 (BS647_25970) | 63826..63975 | - | 150 | Protein_80 | ISL3 family transposase ISEc53 | Transposase |
BS647_RS25865 (BS647_25975) | 64150..64579 | - | 430 | Protein_81 | IS91 family transposase IS91 | Transposase |
BS647_RS25870 (BS647_25980) | 64627..64992 | - | 366 | WP_000124083.1 | hypothetical protein | - |
BS647_RS28115 | 65745..66143 | - | 399 | Protein_83 | reverse transcriptase/maturase family protein | - |
BS647_RS25885 | 66146..66512 | - | 367 | Protein_84 | IS3 family transposase IS3F | Transposase |
BS647_RS25890 | 66514..67201 | - | 688 | Protein_85 | IS3 family transposase IS629 | Transposase |
BS647_RS25895 (BS647_26010) | 67380..68582 | - | 1203 | WP_001195004.1 | Cysteine protease-like VirA | VF |
BS647_RS25900 (BS647_26015) | 69111..72419 | + | 3309 | WP_001071795.1 | Outer membrane protein IcsA autotransporter | VF |
BS647_RS25905 (BS647_26020) | 72563..72881 | + | 319 | Protein_88 | Outer membrane usher protein PapC | VF |
BS647_RS25910 (BS647_26025) | 73054..74263 | + | 1210 | Protein_89 | IS3 family transposase | - |
BS647_RS25915 (BS647_26030) | 74604..76256 | + | 1653 | WP_000612525.1 | bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA | - |
BS647_RS25920 (BS647_26035) | 76267..76437 | - | 171 | Protein_91 | transposase | - |
BS647_RS28665 (BS647_26045) | 76570..76689 | - | 120 | Protein_92 | transposase domain-containing protein | - |
BS647_RS28120 | 76763..77762 | - | 1000 | Protein_93 | group II intron reverse transcriptase/maturase | - |
BS647_RS25940 (BS647_26060) | 77976..78176 | - | 201 | Protein_94 | IS3 family transposase ISSfl10 | Transposase |
BS647_RS25945 (BS647_26065) | 78554..79303 | + | 750 | WP_000828661.1 | phosphatase PAP2 family protein | - |
BS647_RS28670 | 79358..79462 | - | 105 | Protein_96 | hypothetical protein | - |
BS647_RS25955 (BS647_26075) | 80363..80743 | - | 381 | WP_005015412.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
BS647_RS25960 (BS647_26080) | 80926..81321 | - | 396 | WP_000445929.1 | plasmid partitioning/stability family protein | - |
BS647_RS25965 (BS647_26085) | 81321..82280 | - | 960 | WP_000921952.1 | plasmid segregation protein ParM | - |
BS647_RS25975 (BS647_26090) | 82720..83622 | + | 903 | WP_015683198.1 | DUF1281 domain-containing protein | - |
BS647_RS25980 (BS647_26095) | 83619..83930 | + | 312 | WP_011114770.1 | hypothetical protein | - |
BS647_RS25985 (BS647_26100) | 83994..84677 | + | 684 | WP_000086135.1 | DNA methylase | - |
BS647_RS25990 (BS647_26105) | 84678..84899 | + | 222 | WP_001104887.1 | hypothetical protein | - |
BS647_RS27640 | 84859..85345 | + | 487 | Protein_105 | DUF1380 domain-containing protein | - |
BS647_RS26005 (BS647_26120) | 85390..86160 | + | 771 | WP_001006196.1 | hypothetical protein | - |
BS647_RS26015 (BS647_26130) | 86499..87218 | - | 720 | Protein_107 | IS110 family transposase ISSfl8 | Transposase |
BS647_RS26020 (BS647_26135) | 87227..88288 | - | 1062 | Protein_108 | IS66 family transposase ISSfl3 | Transposase |
BS647_RS26030 (BS647_26145) | 89544..90095 | - | 552 | Protein_110 | IS66 family transposase ISSfl3 | Transposase |
BS647_RS26035 (BS647_26150) | 90092..90442 | - | 351 | WP_005048975.1 | IS66 family transposase ISSfl3 | Transposase |
BS647_RS26040 (BS647_26155) | 90439..91113 | - | 675 | WP_001088287.1 | IS66 family transposase ISSfl3 | Transposase |
BS647_RS26045 (BS647_26160) | 91312..91782 | + | 471 | Protein_113 | IS1 family transposase IS1N | Transposase |
BS647_RS28035 (BS647_26165) | 91941..92579 | + | 639 | WP_000607008.1 | hypothetical protein | VF |
BS647_RS26055 | 92694..92963 | + | 270 | Protein_115 | IS3 family transposase ISEc48 | Transposase |
BS647_RS26060 (BS647_26175) | 93006..94093 | + | 1088 | Protein_116 | IS3 family transposase IS2 | Transposase |
BS647_RS26065 (BS647_26180) | 94173..94847 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
BS647_RS26070 (BS647_26185) | 94844..95191 | + | 348 | WP_000631708.1 | IS66 family transposase ISSfl3 | Transposase |
BS647_RS26075 (BS647_26190) | 95211..96812 | + | 1602 | WP_011110603.1 | IS66 family transposase ISSfl3 | Transposase |
BS647_RS26080 (BS647_26195) | 97001..97186 | + | 186 | Protein_120 | IS21 family transposase IS100 | Transposase |
BS647_RS28040 (BS647_26200) | 97286..97495 | - | 210 | Protein_121 | peptidoglycan-binding protein | - |
BS647_RS26090 (BS647_26205) | 97545..97796 | - | 252 | WP_015683204.1 | transporter | - |
BS647_RS26100 (BS647_26215) | 98248..98532 | + | 285 | WP_011114774.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
BS647_RS26105 (BS647_26220) | 98532..98807 | + | 276 | WP_000421262.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
BS647_RS26120 (BS647_26235) | 99786..100739 | + | 954 | Protein_126 | IS66 family transposase ISEc49 | Transposase |
BS647_RS26125 (BS647_26240) | 101275..101493 | + | 219 | WP_000813626.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
BS647_RS26130 (BS647_26245) | 101495..101800 | + | 306 | WP_001159860.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
BS647_RS26140 (BS647_26250) | 102193..103830 | + | 1638 | WP_000936806.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
BS647_RS26145 (BS647_26255) | 104038..104307 | + | 270 | Protein_130 | type II toxin-antitoxin system antitoxin YacA | - |
BS647_RS28675 | 104307..104476 | + | 170 | Protein_131 | type II toxin-antitoxin system toxin YacB | - |
BS647_RS26150 (BS647_26260) | 104559..105149 | + | 591 | WP_000705601.1 | Protein kinase OspG | VF |
BS647_RS26160 (BS647_26270) | 105506..105772 | + | 267 | Protein_133 | IS66 family transposase ISCro1 | Transposase |
BS647_RS26165 (BS647_26275) | 105835..107103 | + | 1269 | Protein_134 | IS4 family transposase IS4 | Transposase |
BS647_RS26170 (BS647_26280) | 107160..108369 | + | 1210 | Protein_135 | IS3 family transposase | - |
BS647_RS28680 | 108410..108490 | + | 81 | Protein_136 | hypothetical protein | - |
BS647_RS28125 (BS647_26285) | 108504..108695 | - | 192 | Protein_137 | IS66 family transposase ISCro1 | Transposase |
BS647_RS26180 (BS647_26290) | 108693..109017 | + | 325 | Protein_138 | IS3 family transposase | - |
BS647_RS26185 (BS647_26295) | 109047..111959 | - | 2913 | WP_011114777.1 | ankyrin repeat domain-containing protein | - |
BS647_RS26200 (BS647_26305) | 112442..113284 | + | 843 | WP_000931197.1 | polysaccharide deacetylase family protein | - |
BS647_RS26205 (BS647_26310) | 113287..114375 | + | 1089 | WP_094081571.1 | putative hexosyltransferase CapU | - |
BS647_RS26210 (BS647_26315) | 114380..115330 | + | 951 | WP_015683210.1 | virulence factor VirK | - |
BS647_RS26215 (BS647_26320) | 115395..116339 | + | 945 | WP_004996485.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
BS647_RS26220 (BS647_26325) | 116493..117416 | - | 924 | Protein_144 | IS630 family transposase IS630 | Transposase |
BS647_RS26230 (BS647_26335) | 118662..118841 | + | 180 | Protein_146 | hypothetical protein | - |
BS647_RS26235 (BS647_26340) | 118850..119248 | - | 399 | WP_000911311.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
BS647_RS26240 (BS647_26345) | 119248..119475 | - | 228 | WP_000450531.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
BS647_RS26260 (BS647_26360) | 119557..124810 | + | 5254 | Protein_149 | Multifunctional conjugation protein TraI | Relaxase |
BS647_RS26265 (BS647_26365) | 124830..125576 | + | 747 | WP_000205722.1 | conjugal transfer pilus acetylase TraX | - |
BS647_RS26270 (BS647_26370) | 125631..126191 | + | 561 | WP_000139368.1 | fertility inhibition protein FinO | - |
BS647_RS26275 (BS647_26375) | 126322..126534 | + | 213 | WP_004971339.1 | ANR family transcriptional regulator | - |
BS647_RS26285 (BS647_26385) | 126778..127017 | + | 240 | Protein_153 | thermonuclease family protein | - |
BS647_RS26295 (BS647_26395) | 128243..128506 | + | 264 | Protein_155 | thermonuclease family protein | - |
BS647_RS26300 (BS647_26400) | 128552..128761 | + | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
BS647_RS26305 (BS647_26405) | 128800..129390 | + | 591 | WP_000766818.1 | DUF2726 domain-containing protein | - |
BS647_RS26310 (BS647_26410) | 129630..129890 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
BS647_RS26320 (BS647_26420) | 130114..130188 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
BS647_RS26325 (BS647_26425) | 130181..131038 | + | 858 | WP_000130973.1 | incFII family plasmid replication initiator RepA | - |
BS647_RS26335 (BS647_26435) | 131739..131930 | + | 192 | WP_000829592.1 | hypothetical protein | - |
BS647_RS26345 (BS647_26445) | 133365..133553 | - | 189 | WP_000957853.1 | hypothetical protein | - |
BS647_RS27665 (BS647_26450) | 133699..133854 | + | 156 | Protein_164 | IS256 family transposase ISEc39 | Transposase |
BS647_RS26350 (BS647_26455) | 133884..135611 | - | 1728 | WP_031942484.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
BS647_RS26355 (BS647_26460) | 136001..136267 | - | 267 | WP_000957716.1 | hypothetical protein | VF |
BS647_RS28685 | 136376..136506 | - | 131 | Protein_167 | IS1 family transposase | - |
BS647_RS28690 | 136504..136587 | + | 84 | Protein_168 | IS66 family insertion sequence element accessory protein TnpB | - |
BS647_RS26370 (BS647_26470) | 137106..137629 | + | 524 | Protein_169 | IS3 family transposase ISSfl11 | Transposase |
BS647_RS26375 (BS647_26475) | 137672..138010 | - | 339 | Protein_170 | IS3 family transposase IS629 | Transposase |
BS647_RS26385 (BS647_26480) | 138084..139066 | + | 983 | Protein_171 | IS3-like element IS911 family transposase | - |
BS647_RS26390 (BS647_26485) | 139157..140385 | + | 1229 | WP_148936977.1 | IS3 family transposase IS2 | Transposase |
BS647_RS27670 | 140397..140588 | + | 192 | Protein_173 | IS3 family transposase | - |
BS647_RS26400 (BS647_26495) | 140612..141305 | - | 694 | Protein_174 | hypothetical protein | VF |
BS647_RS26405 (BS647_26500) | 141361..141513 | + | 153 | Protein_175 | integrase core domain-containing protein | - |
BS647_RS26410 (BS647_26505) | 141795..141932 | - | 138 | WP_011378983.1 | hypothetical protein | - |
BS647_RS26415 (BS647_26510) | 142894..143841 | + | 948 | WP_005061047.1 | Outer membrane protease IcsP | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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