NZ_CP0203431..144194

MGE detailed information

MGE type: Non-Mobilizable plasmid        MGE length: 144194 bp
Accession: NZ_CP020343        Location: 1..144194         Organism: Shigella flexneri 1a strain 0439       Replicon: plasmid unnamed1


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BS647_RS25430 210..581 - 372 Protein_0 integrase core domain-containing protein -
BS647_RS25440 825..944 + 120 Protein_1 Tn3 family transposase TnpA_ISNpu13 Transposase
BS647_RS25445 (BS647_25560) 1194..2060 + 867 WP_001046939.1 hypothetical protein VF
BS647_RS25450 (BS647_25565) 2389..3129 + 741 WP_000850662.1 PAP2 family phosphatase PhoN2 -
BS647_RS28000 3482..4936 - 1455 Protein_4 hypothetical protein VF
BS647_RS25465 (BS647_25575) 5303..5821 - 519 Protein_5 IS66 family transposase IS679 Transposase
BS647_RS25470 (BS647_25580) 5838..6074 - 237 Protein_6 IS3 family transposase ISSfl11 Transposase
BS647_RS25475 (BS647_25585) 6125..7281 - 1157 Protein_7 IS3 family transposase IS600 Transposase
BS647_RS25480 (BS647_25590) 7453..9162 - 1710 WP_005061014.1 hypothetical protein VF
BS647_RS25485 (BS647_25595) 9594..10313 - 720 WP_001121867.1 Phosphothreonine lyase OspF VF
BS647_RS25490 (BS647_25600) 10438..10994 - 557 Protein_10 ISL3 family transposase ISKox3 Transposase
BS647_RS25495 (BS647_25605) 10978..11236 + 259 Protein_11 IS1 family transposase -
BS647_RS25500 (BS647_25610) 11345..11923 - 579 WP_000868563.1 hypothetical protein -
BS647_RS28635 11972..12230 - 259 Protein_13 integrase core domain-containing protein -
BS647_RS25505 (BS647_25615) 12344..12581 - 238 Protein_14 IS21 family transposase IS21 Transposase
BS647_RS25510 (BS647_25620) 12768..13197 - 430 Protein_15 IS91 family transposase IS91 Transposase
BS647_RS28005 13275..13562 + 288 WP_001082155.1 hypothetical protein -
BS647_RS25525 (BS647_25635) 13593..13874 + 282 Protein_17 IS66 family transposase ISCro1 Transposase
BS647_RS25530 (BS647_25640) 13888..15234 - 1347 WP_011587243.1 IS4 family transposase IS4 Transposase
BS647_RS25535 (BS647_25645) 15304..15678 + 375 Protein_19 IS66 family transposase ISCro1 Transposase
BS647_RS25540 (BS647_25650) 15678..16025 + 348 WP_000622998.1 IS66 family transposase ISCro1 Transposase
BS647_RS25545 (BS647_25655) 16045..17274 + 1230 Protein_21 IS66 family transposase IS679 Transposase
BS647_RS25550 17278..17437 + 160 Protein_22 integrase core domain-containing protein -
BS647_RS28640 17680..17772 - 93 Protein_23 type III effector -
BS647_RS25555 (BS647_25665) 18026..18324 + 299 Protein_24 IS256 family transposase IS1414 Transposase
BS647_RS27590 18406..18543 + 138 Protein_25 IS630 family transposase -
BS647_RS25560 (BS647_25675) 18915..19592 + 678 WP_000026470.1 hypothetical protein VF
BS647_RS28010 19916..20026 + 111 Protein_27 IS3 family transposase -
BS647_RS28015 20104..20418 + 315 WP_011114726.1 hypothetical protein -
BS647_RS25575 (BS647_25690) 20700..21266 + 567 WP_000901798.1 hypothetical protein VF
BS647_RS28645 (BS647_25700) 21528..21650 - 123 Protein_30 transposase domain-containing protein -
BS647_RS25590 (BS647_25705) 21793..22347 + 555 Protein_31 IS3 family transposase IS3H Transposase
BS647_RS25595 (BS647_25710) 22686..23047 + 362 Protein_32 IS1 family transposase IS1N Transposase
BS647_RS25605 (BS647_25715) 23134..23811 + 678 Protein_33 IS21 family transposase IS100kyp Transposase
BS647_RS25610 (BS647_25720) 23837..25030 - 1194 WP_005064872.1 IS4 family transposase ISSfl1 Transposase
BS647_RS25620 (BS647_25730) 25110..25466 + 357 Protein_35 IS21 family transposase IS100kyp Transposase
BS647_RS25625 (BS647_25735) 25463..26245 + 783 WP_011114728.1 IS21 family transposase IS100kyp Transposase
BS647_RS25630 (BS647_25740) 26312..26650 + 339 Protein_37 IS1 family transposase -
BS647_RS28650 (BS647_25745) 26664..26798 + 135 Protein_38 hypothetical protein -
BS647_RS25640 (BS647_25750) 26972..28171 + 1200 WP_000200287.1 AAA family ATPase -
BS647_RS25645 (BS647_25755) 28171..29151 + 981 WP_000431558.1 ParB family protein -
BS647_RS25650 (BS647_25760) 29407..29892 + 486 WP_025760655.1 IS110 family transposase ISPpr8 Transposase
BS647_RS25655 (BS647_25765) 29919..30098 - 180 Protein_42 transposase domain-containing protein -
BS647_RS25660 (BS647_25770) 30181..31308 - 1128 WP_014526552.1 group II intron reverse transcriptase/maturase -
BS647_RS28655 31230..31568 + 339 WP_227804374.1 hypothetical protein -
BS647_RS25670 (BS647_25780) 31884..32063 - 180 Protein_45 IS66 family transposase -
BS647_RS25675 (BS647_25785) 32100..33309 - 1210 Protein_46 IS3 family transposase -
BS647_RS25680 33366..33662 - 297 Protein_47 IS3 family transposase IS150 Transposase
BS647_RS25685 (BS647_25795) 33778..33966 + 189 WP_000957853.1 hypothetical protein -
BS647_RS25690 (BS647_25800) 33976..35174 + 1199 WP_094081567.1 IS91 family transposase ISSbo1 Transposase
BS647_RS25695 (BS647_25805) 35347..36101 - 755 Protein_50 IS3 family transposase IS150 Transposase
BS647_RS25700 (BS647_25810) 36112..36471 + 360 Protein_51 IS21 family transposase IS100 Transposase
BS647_RS25705 (BS647_25815) 36464..37252 - 789 WP_005116773.1 AraC family invasion system transcriptional regulator VirF -
BS647_RS25710 (BS647_25820) 37681..38082 + 402 Protein_53 integrase core domain-containing protein -
BS647_RS25715 (BS647_25825) 38264..38530 + 267 WP_000957712.1 hypothetical protein VF
BS647_RS25720 (BS647_25830) 38720..39417 + 698 WP_227804301.1 IS1 family transposase IS1X2 Transposase
BS647_RS25725 (BS647_25835) 39678..40874 - 1197 WP_005085088.1 IS110 family transposase ISSfl4 Transposase
BS647_RS25730 (BS647_25840) 41210..42901 + 1692 WP_000597733.1 putative E3 ubiquitin-protein ligase ipaH7.8 VF
BS647_RS25735 (BS647_25845) 42953..44161 + 1209 Protein_58 IS3 family transposase -
BS647_RS25740 (BS647_25850) 44204..44727 - 524 Protein_59 IS3 family transposase ISSfl11 Transposase
BS647_RS25745 (BS647_25855) 44795..45277 - 483 WP_000405245.1 GNAT family N-acetyltransferase Toxin Detail
BS647_RS25750 (BS647_25860) 45268..45570 - 303 WP_010921625.1 DUF1778 domain-containing protein Antitoxin Detail
BS647_RS25760 (BS647_25870) 45842..46114 + 273 WP_000019158.1 hypothetical protein -
BS647_RS25765 (BS647_25875) 46095..47303 + 1209 WP_000198552.1 IS91 family transposase ISSbo1 Transposase
BS647_RS28020 47475..47603 + 129 Protein_64 IS5/IS1182 family transposase -
BS647_RS25775 (BS647_25885) 47752..49206 - 1455 WP_000701108.1 hypothetical protein VF
BS647_RS25780 (BS647_25890) 49610..50229 + 620 Protein_66 IS1 family transposase IS1X2 Transposase
BS647_RS25785 (BS647_25895) 50279..51488 + 1210 Protein_67 IS3 family transposase -
BS647_RS25790 (BS647_25900) 51532..51942 + 411 Protein_68 IS66 family transposase ISEc23 Transposase
BS647_RS25795 (BS647_25905) 51974..52588 + 615 Protein_69 IS21 family transposase ISEc10 Transposase
BS647_RS25800 (BS647_25910) 52757..56851 - 4095 WP_001034121.1 Serine protease SepA autotransporter VF
BS647_RS25810 (BS647_25920) 57253..57441 + 189 WP_000957853.1 hypothetical protein -
BS647_RS25815 (BS647_25925) 57451..58649 + 1199 WP_094081567.1 IS91 family transposase ISSbo1 Transposase
BS647_RS25820 58818..59324 - 507 Protein_73 IS3 family transposase -
BS647_RS25825 (BS647_25940) 59387..59791 - 405 WP_011114759.1 hypothetical protein -
BS647_RS28660 59981..60109 - 129 Protein_75 IS630 family transposase -
BS647_RS28025 (BS647_25945) 60343..61059 - 717 WP_011114760.1 hypothetical protein -
BS647_RS25840 61643..62043 - 401 Protein_77 transposase -
BS647_RS25845 (BS647_25960) 62076..62530 - 455 Protein_78 ISL3 family transposase ISKox3 Transposase
BS647_RS25850 (BS647_25965) 62583..63793 + 1211 Protein_79 IS3 family transposase -
BS647_RS25860 (BS647_25970) 63826..63975 - 150 Protein_80 ISL3 family transposase ISEc53 Transposase
BS647_RS25865 (BS647_25975) 64150..64579 - 430 Protein_81 IS91 family transposase IS91 Transposase
BS647_RS25870 (BS647_25980) 64627..64992 - 366 WP_000124083.1 hypothetical protein -
BS647_RS28115 65745..66143 - 399 Protein_83 reverse transcriptase/maturase family protein -
BS647_RS25885 66146..66512 - 367 Protein_84 IS3 family transposase IS3F Transposase
BS647_RS25890 66514..67201 - 688 Protein_85 IS3 family transposase IS629 Transposase
BS647_RS25895 (BS647_26010) 67380..68582 - 1203 WP_001195004.1 Cysteine protease-like VirA VF
BS647_RS25900 (BS647_26015) 69111..72419 + 3309 WP_001071795.1 Outer membrane protein IcsA autotransporter VF
BS647_RS25905 (BS647_26020) 72563..72881 + 319 Protein_88 Outer membrane usher protein PapC VF
BS647_RS25910 (BS647_26025) 73054..74263 + 1210 Protein_89 IS3 family transposase -
BS647_RS25915 (BS647_26030) 74604..76256 + 1653 WP_000612525.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA -
BS647_RS25920 (BS647_26035) 76267..76437 - 171 Protein_91 transposase -
BS647_RS28665 (BS647_26045) 76570..76689 - 120 Protein_92 transposase domain-containing protein -
BS647_RS28120 76763..77762 - 1000 Protein_93 group II intron reverse transcriptase/maturase -
BS647_RS25940 (BS647_26060) 77976..78176 - 201 Protein_94 IS3 family transposase ISSfl10 Transposase
BS647_RS25945 (BS647_26065) 78554..79303 + 750 WP_000828661.1 phosphatase PAP2 family protein -
BS647_RS28670 79358..79462 - 105 Protein_96 hypothetical protein -
BS647_RS25955 (BS647_26075) 80363..80743 - 381 WP_005015412.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
BS647_RS25960 (BS647_26080) 80926..81321 - 396 WP_000445929.1 plasmid partitioning/stability family protein -
BS647_RS25965 (BS647_26085) 81321..82280 - 960 WP_000921952.1 plasmid segregation protein ParM -
BS647_RS25975 (BS647_26090) 82720..83622 + 903 WP_015683198.1 DUF1281 domain-containing protein -
BS647_RS25980 (BS647_26095) 83619..83930 + 312 WP_011114770.1 hypothetical protein -
BS647_RS25985 (BS647_26100) 83994..84677 + 684 WP_000086135.1 DNA methylase -
BS647_RS25990 (BS647_26105) 84678..84899 + 222 WP_001104887.1 hypothetical protein -
BS647_RS27640 84859..85345 + 487 Protein_105 DUF1380 domain-containing protein -
BS647_RS26005 (BS647_26120) 85390..86160 + 771 WP_001006196.1 hypothetical protein -
BS647_RS26015 (BS647_26130) 86499..87218 - 720 Protein_107 IS110 family transposase ISSfl8 Transposase
BS647_RS26020 (BS647_26135) 87227..88288 - 1062 Protein_108 IS66 family transposase ISSfl3 Transposase
BS647_RS26030 (BS647_26145) 89544..90095 - 552 Protein_110 IS66 family transposase ISSfl3 Transposase
BS647_RS26035 (BS647_26150) 90092..90442 - 351 WP_005048975.1 IS66 family transposase ISSfl3 Transposase
BS647_RS26040 (BS647_26155) 90439..91113 - 675 WP_001088287.1 IS66 family transposase ISSfl3 Transposase
BS647_RS26045 (BS647_26160) 91312..91782 + 471 Protein_113 IS1 family transposase IS1N Transposase
BS647_RS28035 (BS647_26165) 91941..92579 + 639 WP_000607008.1 hypothetical protein VF
BS647_RS26055 92694..92963 + 270 Protein_115 IS3 family transposase ISEc48 Transposase
BS647_RS26060 (BS647_26175) 93006..94093 + 1088 Protein_116 IS3 family transposase IS2 Transposase
BS647_RS26065 (BS647_26180) 94173..94847 + 675 WP_004967157.1 IS66 family transposase ISSfl3 Transposase
BS647_RS26070 (BS647_26185) 94844..95191 + 348 WP_000631708.1 IS66 family transposase ISSfl3 Transposase
BS647_RS26075 (BS647_26190) 95211..96812 + 1602 WP_011110603.1 IS66 family transposase ISSfl3 Transposase
BS647_RS26080 (BS647_26195) 97001..97186 + 186 Protein_120 IS21 family transposase IS100 Transposase
BS647_RS28040 (BS647_26200) 97286..97495 - 210 Protein_121 peptidoglycan-binding protein -
BS647_RS26090 (BS647_26205) 97545..97796 - 252 WP_015683204.1 transporter -
BS647_RS26100 (BS647_26215) 98248..98532 + 285 WP_011114774.1 ribbon-helix-helix domain-containing protein Antitoxin Detail
BS647_RS26105 (BS647_26220) 98532..98807 + 276 WP_000421262.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
BS647_RS26120 (BS647_26235) 99786..100739 + 954 Protein_126 IS66 family transposase ISEc49 Transposase
BS647_RS26125 (BS647_26240) 101275..101493 + 219 WP_000813626.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
BS647_RS26130 (BS647_26245) 101495..101800 + 306 WP_001159860.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
BS647_RS26140 (BS647_26250) 102193..103830 + 1638 WP_000936806.1 E3 ubiquitin-protein ligase ipaH9.8 VF
BS647_RS26145 (BS647_26255) 104038..104307 + 270 Protein_130 type II toxin-antitoxin system antitoxin YacA -
BS647_RS28675 104307..104476 + 170 Protein_131 type II toxin-antitoxin system toxin YacB -
BS647_RS26150 (BS647_26260) 104559..105149 + 591 WP_000705601.1 Protein kinase OspG VF
BS647_RS26160 (BS647_26270) 105506..105772 + 267 Protein_133 IS66 family transposase ISCro1 Transposase
BS647_RS26165 (BS647_26275) 105835..107103 + 1269 Protein_134 IS4 family transposase IS4 Transposase
BS647_RS26170 (BS647_26280) 107160..108369 + 1210 Protein_135 IS3 family transposase -
BS647_RS28680 108410..108490 + 81 Protein_136 hypothetical protein -
BS647_RS28125 (BS647_26285) 108504..108695 - 192 Protein_137 IS66 family transposase ISCro1 Transposase
BS647_RS26180 (BS647_26290) 108693..109017 + 325 Protein_138 IS3 family transposase -
BS647_RS26185 (BS647_26295) 109047..111959 - 2913 WP_011114777.1 ankyrin repeat domain-containing protein -
BS647_RS26200 (BS647_26305) 112442..113284 + 843 WP_000931197.1 polysaccharide deacetylase family protein -
BS647_RS26205 (BS647_26310) 113287..114375 + 1089 WP_094081571.1 putative hexosyltransferase CapU -
BS647_RS26210 (BS647_26315) 114380..115330 + 951 WP_015683210.1 virulence factor VirK -
BS647_RS26215 (BS647_26320) 115395..116339 + 945 WP_004996485.1 Lipid A biosynthesis myristoyltransferase 2 VF
BS647_RS26220 (BS647_26325) 116493..117416 - 924 Protein_144 IS630 family transposase IS630 Transposase
BS647_RS26230 (BS647_26335) 118662..118841 + 180 Protein_146 hypothetical protein -
BS647_RS26235 (BS647_26340) 118850..119248 - 399 WP_000911311.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
BS647_RS26240 (BS647_26345) 119248..119475 - 228 WP_000450531.1 toxin-antitoxin system antitoxin VapB Antitoxin Detail
BS647_RS26260 (BS647_26360) 119557..124810 + 5254 Protein_149 Multifunctional conjugation protein TraI Relaxase
BS647_RS26265 (BS647_26365) 124830..125576 + 747 WP_000205722.1 conjugal transfer pilus acetylase TraX -
BS647_RS26270 (BS647_26370) 125631..126191 + 561 WP_000139368.1 fertility inhibition protein FinO -
BS647_RS26275 (BS647_26375) 126322..126534 + 213 WP_004971339.1 ANR family transcriptional regulator -
BS647_RS26285 (BS647_26385) 126778..127017 + 240 Protein_153 thermonuclease family protein -
BS647_RS26295 (BS647_26395) 128243..128506 + 264 Protein_155 thermonuclease family protein -
BS647_RS26300 (BS647_26400) 128552..128761 + 210 WP_001299729.1 hemolysin expression modulator Hha -
BS647_RS26305 (BS647_26405) 128800..129390 + 591 WP_000766818.1 DUF2726 domain-containing protein -
BS647_RS26310 (BS647_26410) 129630..129890 + 261 WP_000083819.1 replication regulatory protein RepA -
BS647_RS26320 (BS647_26420) 130114..130188 + 75 WP_001365705.1 RepA leader peptide Tap -
BS647_RS26325 (BS647_26425) 130181..131038 + 858 WP_000130973.1 incFII family plasmid replication initiator RepA -
BS647_RS26335 (BS647_26435) 131739..131930 + 192 WP_000829592.1 hypothetical protein -
BS647_RS26345 (BS647_26445) 133365..133553 - 189 WP_000957853.1 hypothetical protein -
BS647_RS27665 (BS647_26450) 133699..133854 + 156 Protein_164 IS256 family transposase ISEc39 Transposase
BS647_RS26350 (BS647_26455) 133884..135611 - 1728 WP_031942484.1 putative E3 ubiquitin-protein ligase ipaH7.8 VF
BS647_RS26355 (BS647_26460) 136001..136267 - 267 WP_000957716.1 hypothetical protein VF
BS647_RS28685 136376..136506 - 131 Protein_167 IS1 family transposase -
BS647_RS28690 136504..136587 + 84 Protein_168 IS66 family insertion sequence element accessory protein TnpB -
BS647_RS26370 (BS647_26470) 137106..137629 + 524 Protein_169 IS3 family transposase ISSfl11 Transposase
BS647_RS26375 (BS647_26475) 137672..138010 - 339 Protein_170 IS3 family transposase IS629 Transposase
BS647_RS26385 (BS647_26480) 138084..139066 + 983 Protein_171 IS3-like element IS911 family transposase -
BS647_RS26390 (BS647_26485) 139157..140385 + 1229 WP_148936977.1 IS3 family transposase IS2 Transposase
BS647_RS27670 140397..140588 + 192 Protein_173 IS3 family transposase -
BS647_RS26400 (BS647_26495) 140612..141305 - 694 Protein_174 hypothetical protein VF
BS647_RS26405 (BS647_26500) 141361..141513 + 153 Protein_175 integrase core domain-containing protein -
BS647_RS26410 (BS647_26505) 141795..141932 - 138 WP_011378983.1 hypothetical protein -
BS647_RS26415 (BS647_26510) 142894..143841 + 948 WP_005061047.1 Outer membrane protease IcsP VF

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance