MGE detailed information
MGE type: Conjugative plasmid MGE length: 85009 bp
Accession: NZ_CP019909 Location: 1..85009 Organism: Escherichia coli strain MDR_56 Replicon: plasmid unnamed3
Accession: NZ_CP019909 Location: 1..85009 Organism: Escherichia coli strain MDR_56 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B1200_RS28215 () | 504..815 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| B1200_RS28220 () | 830..1196 | - | 367 | Protein_2 | type IV conjugative transfer system pilin TraA | - |
| B1200_RS28225 () | 1230..1457 | - | 228 | WP_001442099.1 | conjugal transfer relaxosome protein TraY | - |
| B1200_RS28230 () | 1551..2237 | - | 687 | WP_078081140.1 | PAS domain-containing protein | - |
| B1200_RS28235 () | 2427..2810 | - | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| B1200_RS28240 () | 3144..3734 | + | 591 | WP_000252676.1 | hypothetical protein | VF |
| B1200_RS28245 () | 4030..4851 | - | 822 | WP_001234485.1 | DUF945 domain-containing protein | - |
| B1200_RS29870 () | 5030..5642 | + | 613 | Protein_8 | hypothetical protein | - |
| B1200_RS28260 () | 5880..6041 | - | 162 | WP_001332444.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 6094..6305 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| - () | 6094..6305 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| - () | 6094..6305 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| - () | 6094..6305 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| B1200_RS28270 () | 6316..7035 | - | 720 | WP_001276275.1 | plasmid SOS inhibition protein A | - |
| B1200_RS28275 () | 7032..7466 | - | 435 | WP_000845935.1 | conjugation system SOS inhibitor PsiB | - |
| B1200_RS29875 () | 7521..9479 | - | 1959 | Protein_12 | ParB/RepB/Spo0J family partition protein | - |
| B1200_RS28295 () | 9538..9771 | - | 234 | WP_001209608.1 | DUF905 domain-containing protein | - |
| B1200_RS28300 () | 9834..10331 | - | 498 | WP_050427786.1 | single-stranded DNA-binding protein | - |
| B1200_RS28310 () | 10983..11680 | + | 698 | Protein_15 | IS1 family transposase IS1S | Transposase |
| B1200_RS28315 () | 11737..12960 | - | 1224 | WP_001696651.1 | tyrosine-type recombinase/integrase | - |
| B1200_RS28320 () | 13037..13948 | - | 912 | WP_001442123.1 | hypothetical protein | - |
| B1200_RS28325 () | 13945..14943 | - | 999 | WP_000549075.1 | IS91 family transposase ISMno24 | Transposase |
| B1200_RS28330 () | 15006..16151 | + | 1146 | Protein_19 | translesion error-prone DNA polymerase V subunit UmuC | - |
| B1200_RS28340 () | 16288..17259 | - | 972 | WP_001233385.1 | ParB/RepB/Spo0J family partition protein | - |
| B1200_RS28345 () | 17256..18461 | - | 1206 | WP_001442122.1 | Plasmid partition protein A | VF |
| B1200_RS28350 () | 19082..19813 | + | 732 | WP_000504262.1 | replication initiation protein | - |
| B1200_RS28360 () | 20410..20841 | + | 432 | Protein_23 | relaxase NikB | - |
| B1200_RS28370 () | 21300..21968 | + | 669 | WP_000155780.1 | cysteine hydrolase | - |
| B1200_RS28375 () | 21974..22834 | + | 861 | WP_001442105.1 | DUF2877 domain-containing protein | - |
| B1200_RS28380 () | 22929..24488 | + | 1560 | WP_000865634.1 | acyl-CoA synthetase FdrA | - |
| B1200_RS28385 () | 24485..25909 | + | 1425 | WP_001093931.1 | DUF1116 domain-containing protein | - |
| B1200_RS28390 () | 25902..26858 | + | 957 | WP_001696801.1 | carbamate kinase | - |
| B1200_RS28395 () | 26875..27264 | + | 390 | WP_001696803.1 | hypothetical protein | - |
| B1200_RS28400 () | 27287..28510 | + | 1224 | WP_024188138.1 | cytosine permease | - |
| B1200_RS28405 () | 28588..29478 | + | 891 | WP_000470711.1 | putative HTH-type transcriptional regulator YahB | VF |
| B1200_RS28415 () | 29912..30301 | + | 390 | WP_000595317.1 | cytochrome B562 | - |
| B1200_RS28425 () | 30508..31541 | + | 1034 | Protein_33 | Multidrug resistance ABC transporter ATP-binding/permease protein BmrA | VF |
| B1200_RS30390 () | 31536..32012 | + | 477 | Protein_34 | Multidrug resistance ABC transporter ATP-binding/permease protein BmrA | VF |
| B1200_RS28430 () | 32690..32980 | - | 291 | WP_000633743.1 | hypothetical protein | - |
| B1200_RS28435 () | 33038..33703 | - | 666 | WP_000536047.1 | hypothetical protein | - |
| B1200_RS28440 () | 33806..34084 | - | 279 | Protein_37 | serine acetyltransferase | - |
| B1200_RS28445 () | 34100..34794 | - | 695 | Protein_38 | IS1 family transposase IS1A | Transposase |
| B1200_RS28465 () | 35459..35779 | + | 321 | WP_001334006.1 | IS3 family transposase | - |
| B1200_RS28470 () | 36453..37382 | - | 930 | WP_001084376.1 | putative HTH-type transcriptional regulator YahB | VF |
| B1200_RS28475 () | 37770..38375 | + | 606 | WP_000066154.1 | ankyrin repeat domain-containing protein | - |
| B1200_RS28480 () | 38461..39309 | + | 849 | WP_000531854.1 | DUF2877 domain-containing protein | - |
| B1200_RS28485 () | 39269..40816 | + | 1548 | WP_000027750.1 | acyl-CoA synthetase FdrA | - |
| B1200_RS28490 () | 40816..42234 | + | 1419 | WP_000084168.1 | DUF1116 domain-containing protein | - |
| B1200_RS28495 () | 42347..43897 | + | 1551 | WP_001084509.1 | hypothetical protein | - |
| B1200_RS28500 () | 43924..44886 | + | 963 | WP_000661609.1 | carbamate kinase family protein | - |
| B1200_RS28510 () | 45722..46943 | - | 1222 | Protein_47 | ISL3 family transposase ISEc38 | Transposase |
| B1200_RS28515 () | 47043..47407 | + | 365 | Protein_48 | IS1 family transposase IS1A | Transposase |
| B1200_RS28520 () | 47462..48244 | - | 783 | WP_001442137.1 | IS21 family transposase IS100kyp | Transposase |
| B1200_RS28525 () | 48241..49263 | - | 1023 | WP_000255956.1 | IS21 family transposase IS100kyp | Transposase |
| B1200_RS28535 () | 49352..49699 | + | 348 | Protein_51 | IS1 family transposase IS1A | Transposase |
| B1200_RS28545 () | 50139..50426 | - | 288 | WP_000222760.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| B1200_RS28550 () | 50423..50674 | - | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| B1200_RS28555 () | 51637..52494 | - | 858 | WP_000774297.1 | incFII family plasmid replication initiator RepA | - |
| B1200_RS28560 () | 52487..52969 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| B1200_RS28565 () | 52962..53036 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| B1200_RS28575 () | 53268..53525 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| B1200_RS28580 () | 53809..54015 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 54002..54063 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 54002..54063 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 54002..54063 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 54002..54063 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| B1200_RS30395 () | 54319..54393 | - | 75 | Protein_59 | endonuclease | - |
| B1200_RS28590 () | 54639..54851 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| B1200_RS28595 () | 54987..55547 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| B1200_RS28600 () | 55650..56510 | - | 861 | WP_000704513.1 | putative protein YcjY | VF |
| B1200_RS28605 () | 56569..57315 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| B1200_RS28610 () | 57335..62605 | - | 5271 | WP_078081141.1 | Multifunctional conjugation protein TraI | Relaxase |
| B1200_RS28615 () | 62687..62914 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| B1200_RS28620 () | 62914..63312 | + | 399 | WP_000911333.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| B1200_RS28625 () | 63321..65474 | - | 2154 | WP_000009379.1 | type IV conjugative transfer system coupling protein TraD | - |
| B1200_RS28630 () | 65727..66458 | - | 732 | WP_000850416.1 | complement resistance protein TraT | - |
| B1200_RS28635 () | 66472..66981 | - | 510 | WP_000628105.1 | conjugal transfer entry exclusion protein TraS | - |
| B1200_RS28640 () | 66978..69803 | - | 2826 | WP_001007036.1 | conjugal transfer mating pair stabilization protein TraG | - |
| B1200_RS28645 () | 69800..71173 | - | 1374 | WP_000944319.1 | conjugal transfer protein TraH | - |
| B1200_RS28660 () | 71539..71880 | - | 342 | WP_001442101.1 | P-type conjugative transfer protein TrbJ | - |
| B1200_RS28665 () | 71810..72355 | - | 546 | WP_000059833.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| B1200_RS28670 () | 72342..72626 | - | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| B1200_RS28675 () | 72707..72982 | + | 276 | WP_001513501.1 | hypothetical protein | - |
| B1200_RS28680 () | 72984..73331 | - | 348 | WP_001287907.1 | conjugal transfer protein TrbA | - |
| B1200_RS28685 () | 73347..74090 | - | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| B1200_RS28690 () | 74083..74340 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| B1200_RS28695 () | 74367..76175 | - | 1809 | WP_078081142.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| B1200_RS28700 () | 76172..76810 | - | 639 | WP_000777703.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| B1200_RS28705 () | 76819..77811 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| B1200_RS28710 () | 77808..78440 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| B1200_RS28715 () | 78437..78823 | - | 387 | WP_000099688.1 | type-F conjugative transfer system protein TrbI | - |
| B1200_RS28720 () | 78820..81447 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| B1200_RS28725 () | 81607..81828 | - | 222 | WP_001278690.1 | conjugal transfer protein TraR | - |
| B1200_RS28730 () | 81963..82478 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| B1200_RS28735 () | 82475..82726 | - | 252 | WP_001038351.1 | conjugal transfer protein TrbG | - |
| B1200_RS28740 () | 82738..82968 | - | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| B1200_RS28745 () | 82922..83512 | - | 591 | WP_000002787.1 | conjugal transfer protein TraP | - |
| B1200_RS28750 () | 83502..84929 | - | 1428 | WP_000146685.1 | conjugal transfer protein TraB | - |
| B1200_RS30225 () | 84929..85009 | - | 81 | Protein_91 | type-F conjugative transfer system secretin TraK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|