MGE detailed information
MGE type: Conjugative plasmid MGE length: 117844 bp
Accession: NZ_CP018978 Location: 1..117844 Organism: Escherichia coli strain Ecol_656 Replicon: plasmid pEC656_1
Accession: NZ_CP018978 Location: 1..117844 Organism: Escherichia coli strain Ecol_656 Replicon: plasmid pEC656_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BE941_RS00385 () | 1..531 | + | 531 | Protein_0 | histidine-type phosphatase | - |
| BE941_RS00395 () | 589..1293 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| BE941_RS00400 () | 1318..2514 | + | 1197 | Protein_2 | IS3 family transposase | - |
| BE941_RS00405 () | 2536..2769 | + | 234 | Protein_3 | Tn3 family transposase | - |
| BE941_RS00410 () | 2846..3154 | + | 309 | Protein_4 | IS4 family transposase ISEc13 | Transposase |
| BE941_RS00415 () | 3213..4523 | - | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
| BE941_RS00420 () | 4516..5589 | - | 1074 | WP_000950177.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| BE941_RS00425 () | 5595..6419 | - | 825 | WP_000922702.1 | phosphodiesterase | - |
| BE941_RS00430 () | 6430..7317 | - | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
| BE941_RS00435 () | 7307..8185 | - | 879 | WP_000338039.1 | sugar ABC transporter permease | - |
| BE941_RS00440 () | 8316..8756 | - | 441 | Protein_10 | zinc-binding dehydrogenase | - |
| BE941_RS00450 () | 9157..10047 | + | 891 | WP_001077068.1 | dihydrodipicolinate synthase family protein | - |
| BE941_RS00455 () | 10072..10452 | + | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| BE941_RS00460 () | 10485..11450 | + | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| BE941_RS00465 () | 11496..12248 | - | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| BE941_RS00470 () | 12853..13137 | + | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| BE941_RS00475 () | 13137..13412 | + | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| BE941_RS00480 () | 13518..13811 | + | 294 | WP_001105060.1 | hypothetical protein | - |
| BE941_RS28415 () | 13846..13974 | - | 129 | Protein_18 | IS481 family transposase | - |
| BE941_RS00485 () | 14007..15176 | - | 1170 | WP_001072355.1 | hypothetical protein | - |
| BE941_RS00495 () | 15669..15976 | + | 308 | Protein_20 | type II toxin-antitoxin system ParD family antitoxin | - |
| BE941_RS00510 () | 16265..16962 | + | 698 | Protein_21 | IS1 family transposase IS1A | Transposase |
| BE941_RS00520 () | 17216..18238 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| BE941_RS00525 () | 18223..19788 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| BE941_RS00530 () | 19863..20279 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| BE941_RS00535 () | 20276..20506 | - | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| BE941_RS00540 () | 20887..24681 | + | 3795 | WP_001144732.1 | hypothetical protein | - |
| BE941_RS00545 () | 24726..25142 | - | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| BE941_RS00550 () | 25139..25369 | - | 231 | WP_001261278.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| BE941_RS00555 () | 25634..26134 | + | 501 | WP_000528932.1 | hypothetical protein | - |
| BE941_RS00560 () | 26147..26920 | + | 774 | WP_000905949.1 | hypothetical protein | - |
| BE941_RS00565 () | 27131..28744 | - | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| BE941_RS00570 () | 28775..29125 | - | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| BE941_RS00575 () | 29122..29547 | - | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| BE941_RS00580 () | 29609..30760 | + | 1152 | WP_031325939.1 | DUF3800 domain-containing protein | - |
| BE941_RS00585 () | 30794..31306 | - | 513 | WP_000151784.1 | hypothetical protein | - |
| BE941_RS00590 () | 31852..32070 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| BE941_RS00595 () | 32072..32377 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| BE941_RS00600 () | 32378..33184 | + | 807 | WP_000016982.1 | site-specific integrase | - |
| BE941_RS00605 () | 33958..34713 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| BE941_RS00610 () | 35301..36467 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| BE941_RS00615 () | 36467..37438 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| BE941_RS00630 () | 38305..39207 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| BE941_RS00635 () | 39211..39515 | + | 305 | Protein_43 | hypothetical protein | - |
| BE941_RS00640 () | 39592..40275 | + | 684 | WP_000086185.1 | DNA methylase | - |
| BE941_RS00645 () | 40276..40497 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| BE941_RS00650 () | 40511..40945 | + | 435 | WP_000274437.1 | DUF1380 family protein | - |
| BE941_RS28420 () | 40996..41772 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| BE941_RS00665 () | 42312..42614 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| BE941_RS00670 () | 42661..43083 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| BE941_RS00675 () | 43080..43271 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| BE941_RS00690 () | 44306..44536 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| BE941_RS00695 () | 44588..45949 | + | 1362 | WP_000170728.1 | DUF3560 domain-containing protein | - |
| BE941_RS00700 () | 45996..46559 | + | 564 | WP_012783964.1 | class I SAM-dependent methyltransferase | - |
| BE941_RS00725 () | 47423..47950 | + | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| BE941_RS00730 () | 48006..48239 | + | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| BE941_RS00735 () | 48298..50256 | + | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| BE941_RS00740 () | 50311..50745 | + | 435 | WP_000845901.1 | conjugation system SOS inhibitor PsiB | - |
| BE941_RS00745 () | 50742..51461 | + | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| BE941_RS28425 () | 51473..51661 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 51473..51697 | + | 225 | NuclAT_0 | - | - |
| - () | 51473..51697 | + | 225 | NuclAT_0 | - | - |
| - () | 51473..51697 | + | 225 | NuclAT_0 | - | - |
| - () | 51473..51697 | + | 225 | NuclAT_0 | - | - |
| - () | 51630..51695 | + | 66 | - | - | Antitoxin Detail |
| BE941_RS00750 () | 51741..51899 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| BE941_RS00770 () | 52818..53105 | + | 288 | WP_000107537.1 | hypothetical protein | - |
| BE941_RS00775 () | 53226..54047 | + | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| BE941_RS00780 () | 54344..54991 | - | 648 | WP_000614282.1 | hypothetical protein | VF |
| BE941_RS00785 () | 55277..55660 | + | 384 | WP_001151564.1 | relaxosome protein TraM | - |
| BE941_RS00790 () | 55854..56540 | + | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| BE941_RS00795 () | 56634..56861 | + | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| BE941_RS00800 () | 56895..57257 | + | 363 | WP_001098998.1 | type IV conjugative transfer system pilin TraA | - |
| BE941_RS00805 () | 57262..57573 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| BE941_RS00810 () | 57595..58161 | + | 567 | WP_000399804.1 | type IV conjugative transfer system protein TraE | - |
| BE941_RS00815 () | 58172..58876 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| BE941_RS00820 () | 58876..60303 | + | 1428 | WP_000146638.1 | conjugal transfer protein TraB | - |
| BE941_RS00825 () | 60293..60877 | + | 585 | WP_000002795.1 | conjugal transfer protein TraP | - |
| BE941_RS00830 () | 60831..61184 | + | 354 | WP_071528018.1 | conjugal transfer protein TrbD | - |
| BE941_RS00835 () | 61177..61428 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| BE941_RS00840 () | 61425..61940 | + | 516 | WP_000809893.1 | type IV conjugative transfer system lipoprotein TraV | - |
| BE941_RS00845 () | 62075..62296 | + | 222 | WP_001278978.1 | conjugal transfer protein TraR | - |
| BE941_RS00850 () | 62456..65083 | + | 2628 | WP_001064239.1 | type IV secretion system protein TraC | - |
| BE941_RS00855 () | 65080..65466 | + | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| BE941_RS00860 () | 65463..66095 | + | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| BE941_RS00865 () | 66092..67084 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| BE941_RS00870 () | 67114..67419 | + | 306 | WP_000224411.1 | hypothetical protein | - |
| BE941_RS00875 () | 67428..68042 | + | 615 | WP_061103956.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| BE941_RS00880 () | 68008..69618 | + | 1611 | WP_059219397.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| BE941_RS00885 () | 69645..69902 | + | 258 | WP_000864320.1 | conjugal transfer protein TrbE | - |
| BE941_RS00890 () | 69895..70638 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| BE941_RS00895 () | 70654..70992 | + | 339 | WP_001287905.1 | conjugal transfer protein TrbA | - |
| BE941_RS00900 () | 71119..71403 | + | 285 | WP_001448202.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| BE941_RS00905 () | 71390..71935 | + | 546 | WP_000059824.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| BE941_RS00910 () | 71865..72206 | + | 342 | WP_001448115.1 | P-type conjugative transfer protein TrbJ | - |
| BE941_RS00915 () | 72154..72579 | + | 426 | WP_001448114.1 | F-type conjugal transfer protein TrbF | - |
| BE941_RS00920 () | 72566..73939 | + | 1374 | WP_001137364.1 | conjugal transfer protein TraH | - |
| BE941_RS00925 () | 73936..76755 | + | 2820 | WP_078214761.1 | conjugal transfer mating pair stabilization protein TraG | - |
| BE941_RS00930 () | 76774..77271 | + | 498 | WP_000605861.1 | hypothetical protein | - |
| BE941_RS00935 () | 77303..78034 | + | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| BE941_RS00940 () | 78287..80512 | + | 2226 | WP_052935733.1 | type IV conjugative transfer system coupling protein TraD | - |
| BE941_RS00945 () | 80512..85782 | + | 5271 | WP_000986934.1 | Multifunctional conjugation protein TraI | Relaxase |
| BE941_RS00950 () | 85802..86548 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| BE941_RS00955 () | 86607..87467 | + | 861 | WP_000704528.1 | putative protein YcjY | VF |
| BE941_RS00960 () | 87570..88130 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| BE941_RS00965 () | 88259..88471 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| BE941_RS00970 () | 88716..89177 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| BE941_RS00975 () | 89223..89432 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| BE941_RS00980 () | 89470..90060 | + | 591 | WP_000766805.1 | DUF2726 domain-containing protein | - |
| BE941_RS00985 () | 90300..90560 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| BE941_RS00995 () | 90785..90859 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| BE941_RS01000 () | 90852..91709 | + | 858 | WP_000130647.1 | incFII family plasmid replication initiator RepA | - |
| BE941_RS01010 () | 92735..93595 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| BE941_RS01015 () | 93710..94414 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| BE941_RS01025 () | 94480..95994 | + | 1515 | Protein_109 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| BE941_RS01030 () | 96036..96278 | + | 243 | WP_032140899.1 | hypothetical protein | - |
| BE941_RS01035 () | 96310..96960 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| BE941_RS01040 () | 97066..98265 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| BE941_RS01045 () | 98297..99181 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| BE941_RS01050 () | 99319..99726 | - | 408 | WP_194285099.1 | cysteine hydrolase | - |
| BE941_RS01055 () | 99715..100464 | + | 750 | Protein_115 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| BE941_RS01060 () | 100488..101093 | - | 606 | WP_000509965.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| BE941_RS01065 () | 101188..104085 | + | 2898 | WP_001553819.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| BE941_RS01070 () | 104222..104623 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| BE941_RS28430 () | 104556..104813 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| BE941_RS01075 () | 104906..105559 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| BE941_RS01080 () | 105658..107553 | - | 1896 | Protein_121 | Tn3 family transposase TnpA_Tn3 | Transposase |
| BE941_RS01090 () | 107606..108310 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| BE941_RS01095 () | 108536..109351 | + | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| BE941_RS01105 () | 109698..111584 | + | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| BE941_RS01110 () | 111625..112152 | + | 528 | WP_000178050.1 | iron transporter | - |
| BE941_RS01115 () | 112256..113635 | + | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| BE941_RS01120 () | 113638..114921 | + | 1284 | WP_000964653.1 | ABC transporter permease | - |
| BE941_RS01125 () | 114911..116041 | + | 1131 | WP_000729220.1 | ABC transporter permease | - |
| BE941_RS01130 () | 116046..116741 | + | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| BE941_RS01135 () | 116728..117213 | + | 486 | WP_001267177.1 | TlpA family protein disulfide reductase | - |
| BE941_RS01140 () | 117238..117723 | + | 486 | WP_000874189.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|