MGE detailed information
MGE type: Conjugative plasmid MGE length: 125977 bp
Accession: NZ_CP015239 Location: 1..125977 Organism: Escherichia coli strain 2011C-3911 Replicon: plasmid unnamed1
Accession: NZ_CP015239 Location: 1..125977 Organism: Escherichia coli strain 2011C-3911 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5956_RS00010 () | 695..1435 | - | 741 | WP_001066934.1 | tyrosine-type recombinase/integrase | - |
| A5956_RS00020 () | 2103..3272 | + | 1170 | WP_028985819.1 | hypothetical protein | - |
| A5956_RS27025 () | 3551..3834 | - | 284 | Protein_3 | IS3 family transposase | - |
| A5956_RS26445 () | 3854..4512 | - | 659 | Protein_4 | transposase | - |
| A5956_RS24760 () | 4848..5120 | - | 273 | WP_071827457.1 | Major pilu subunit operon regulatory protein PapB | VF |
| A5956_RS00035 () | 6490..6870 | + | 381 | WP_032326968.1 | IS66 family transposase ISEc8 | Transposase |
| A5956_RS00040 () | 6867..7214 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| A5956_RS00045 () | 7264..8802 | + | 1539 | WP_064055970.1 | IS66 family transposase ISEc8 | Transposase |
| A5956_RS00050 () | 9036..11006 | + | 1971 | WP_050437105.1 | Hemin receptor | VF |
| A5956_RS00055 () | 11025..11816 | + | 792 | WP_001774400.1 | DUF4198 domain-containing protein | - |
| A5956_RS00060 () | 11975..12544 | - | 570 | WP_028985823.1 | hypothetical protein | - |
| A5956_RS00065 () | 12796..14664 | - | 1869 | WP_032326966.1 | Lipase | VF |
| A5956_RS00070 () | 14723..25768 | - | 11046 | WP_064055971.1 | hypothetical protein | - |
| A5956_RS00075 () | 25994..27241 | - | 1248 | WP_001620879.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| A5956_RS00080 () | 27301..29448 | - | 2148 | WP_001620877.1 | Toxin RTX-I translocation ATP-binding protein | VF |
| A5956_RS00085 () | 29445..30713 | - | 1269 | WP_032211973.1 | TolC family protein | - |
| A5956_RS24765 () | 30771..31073 | - | 303 | WP_071978015.1 | Major pilu subunit operon regulatory protein PapB | VF |
| A5956_RS00090 () | 31618..31943 | + | 326 | Protein_18 | IS3 family transposase ISEal1 | Transposase |
| A5956_RS00095 () | 32030..33052 | + | 1023 | Protein_19 | IS21 family transposase IS100kyp | Transposase |
| A5956_RS00100 () | 33049..33830 | + | 782 | Protein_20 | IS21 family transposase IS100 | Transposase |
| A5956_RS00105 () | 33869..34021 | + | 153 | WP_028985868.1 | IS3 family transposase | - |
| A5956_RS00110 () | 34260..35831 | - | 1572 | WP_064055972.1 | IS66 family transposase ISCro1 | Transposase |
| A5956_RS00115 () | 35851..36198 | - | 348 | WP_028985869.1 | IS66 family transposase ISCro1 | Transposase |
| A5956_RS00120 () | 36198..36848 | - | 651 | WP_032326996.1 | IS66 family transposase IS679 | Transposase |
| A5956_RS00125 () | 36978..38534 | - | 1557 | WP_032326997.1 | IS66 family transposase ISSfl3 | Transposase |
| A5956_RS00130 () | 38554..38899 | - | 346 | Protein_26 | IS66 family insertion sequence element accessory protein TnpB | - |
| A5956_RS00135 () | 38896..39570 | - | 675 | WP_032326998.1 | IS66 family transposase ISSfl3 | Transposase |
| A5956_RS00140 () | 39906..40604 | - | 699 | WP_000431491.1 | lactate utilization protein C | - |
| A5956_RS00145 () | 40609..42024 | - | 1416 | WP_000054157.1 | iron-sulfur cluster-binding protein | - |
| A5956_RS00150 () | 42035..42754 | - | 720 | WP_001102132.1 | (Fe-S)-binding protein | - |
| A5956_RS00155 () | 42804..44360 | - | 1557 | WP_000554413.1 | L-lactate permease | - |
| A5956_RS00160 () | 44635..44859 | - | 225 | Protein_32 | IS3 family transposase IS1203 | Transposase |
| A5956_RS00165 () | 44914..45947 | - | 1034 | Protein_33 | IS256 family transposase IS1414 | Transposase |
| A5956_RS00170 () | 46040..46387 | - | 348 | WP_028985873.1 | hypothetical protein | - |
| A5956_RS00180 () | 47061..47810 | - | 750 | Protein_35 | ISKra4 family transposase ISEc51 | Transposase |
| A5956_RS24790 () | 47810..48148 | + | 339 | Protein_36 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| A5956_RS24795 () | 48487..48726 | - | 240 | WP_071978018.1 | MarR family transcriptional regulator | - |
| A5956_RS26460 () | 48739..48999 | - | 261 | WP_072148071.1 | hypothetical protein | - |
| A5956_RS00195 () | 49702..50559 | - | 858 | WP_064055973.1 | incFII family plasmid replication initiator RepA | - |
| A5956_RS00200 () | 50552..50626 | - | 75 | WP_001365571.1 | RepA leader peptide Tap | - |
| A5956_RS00205 () | 50862..51119 | - | 258 | WP_000084404.1 | replication regulatory protein RepA | - |
| A5956_RS00210 () | 51403..51609 | - | 207 | WP_032211975.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 51601..51657 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 51601..51657 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 51601..51657 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| - () | 51601..51657 | + | 57 | NuclAT_1 | - | Antitoxin Detail |
| A5956_RS00215 () | 51832..52215 | - | 384 | WP_028985877.1 | hypothetical protein | - |
| A5956_RS00220 () | 52318..52779 | - | 462 | WP_000760076.1 | thermonuclease family protein | - |
| A5956_RS00230 () | 53880..54437 | - | 558 | WP_028985878.1 | fertility inhibition protein FinO | - |
| A5956_RS00235 () | 54473..54841 | - | 369 | WP_000722534.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| A5956_RS00240 () | 54924..55670 | - | 747 | WP_028985879.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| A5956_RS00245 () | 55690..60960 | - | 5271 | WP_032326999.1 | Multifunctional conjugation protein TraI | Relaxase |
| A5956_RS00250 () | 61042..61269 | + | 228 | WP_000450527.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| A5956_RS00255 () | 61269..61667 | + | 399 | WP_000911320.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| A5956_RS00260 () | 61676..63878 | - | 2203 | Protein_51 | type IV conjugative transfer system coupling protein TraD | - |
| A5956_RS00265 () | 63934..64665 | - | 732 | WP_047643166.1 | hypothetical protein | - |
| A5956_RS00270 () | 64841..65629 | - | 789 | WP_032327001.1 | hypothetical protein | - |
| A5956_RS00275 () | 65797..66108 | + | 312 | WP_000522220.1 | heavy metal-binding domain-containing protein | - |
| A5956_RS00280 () | 66111..68930 | - | 2820 | WP_032327002.1 | conjugal transfer mating pair stabilization protein TraG | - |
| A5956_RS00285 () | 68927..70300 | - | 1374 | WP_000944332.1 | conjugal transfer protein TraH | - |
| A5956_RS00290 () | 70287..70712 | - | 426 | WP_071978021.1 | F-type conjugal transfer protein TrbF | - |
| A5956_RS00295 () | 70660..71007 | - | 348 | WP_071532380.1 | P-type conjugative transfer protein TrbJ | - |
| A5956_RS00300 () | 70937..71517 | - | 581 | Protein_59 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| A5956_RS00305 () | 71504..71794 | - | 291 | WP_021521297.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| A5956_RS00310 () | 72190..72531 | - | 342 | WP_000556797.1 | conjugal transfer protein TrbA | - |
| A5956_RS00315 () | 72545..73288 | - | 744 | WP_001030373.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| A5956_RS00320 () | 73281..73538 | - | 258 | WP_000864346.1 | conjugal transfer protein TrbE | - |
| A5956_RS00325 () | 73552..75381 | - | 1830 | WP_032327013.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| A5956_RS00330 () | 75550..75930 | - | 381 | WP_000056344.1 | hypothetical protein | - |
| A5956_RS00335 () | 75927..76565 | - | 639 | WP_001035178.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| A5956_RS00340 () | 76758..76997 | + | 240 | WP_001066128.1 | hypothetical protein | - |
| A5956_RS00345 () | 76994..77173 | - | 180 | WP_000970212.1 | hypothetical protein | - |
| A5956_RS27030 () | 77194..77318 | - | 125 | Protein_69 | TraU family protein | - |
| A5956_RS00350 () | 77353..77730 | - | 378 | WP_001365598.1 | hypothetical protein | - |
| A5956_RS00360 () | 78527..79069 | - | 543 | WP_032327006.1 | hypothetical protein | - |
| A5956_RS00365 () | 79083..80075 | - | 993 | WP_000817328.1 | conjugal transfer pilus assembly protein TraU | - |
| A5956_RS00370 () | 80072..80704 | - | 633 | WP_001203739.1 | type-F conjugative transfer system protein TraW | - |
| A5956_RS00375 () | 80701..81087 | - | 387 | WP_000214101.1 | type-F conjugative transfer system protein TrbI | - |
| A5956_RS00380 () | 81084..83714 | - | 2631 | WP_032327007.1 | type IV secretion system protein TraC | - |
| A5956_RS27035 () | 83839..84186 | - | 348 | WP_000836684.1 | hypothetical protein | - |
| A5956_RS00390 () | 84512..84985 | - | 474 | WP_032327008.1 | hypothetical protein | - |
| A5956_RS00395 () | 84996..85391 | - | 396 | WP_000549593.1 | hypothetical protein | - |
| A5956_RS00400 () | 85384..85605 | - | 222 | WP_001278977.1 | conjugal transfer protein TraR | - |
| A5956_RS00405 () | 85740..86255 | - | 516 | WP_000809868.1 | type IV conjugative transfer system lipoprotein TraV | - |
| A5956_RS00410 () | 86252..86503 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| A5956_RS00415 () | 86496..86816 | - | 321 | WP_032327009.1 | conjugal transfer protein TrbD | - |
| A5956_RS00420 () | 86803..87390 | - | 588 | WP_032327010.1 | conjugal transfer protein TraP | - |
| A5956_RS00425 () | 87380..88810 | - | 1431 | WP_000146622.1 | conjugal transfer protein TraB | - |
| A5956_RS00430 () | 88810..89538 | - | 729 | WP_001365587.1 | type-F conjugative transfer system secretin TraK | - |
| A5956_RS00435 () | 89525..90091 | - | 567 | WP_000399759.1 | type IV conjugative transfer system protein TraE | - |
| A5956_RS00440 () | 90113..90424 | - | 312 | WP_000012099.1 | type IV conjugative transfer system protein TraL | - |
| A5956_RS00445 () | 90439..90792 | - | 354 | WP_028985883.1 | type IV conjugative transfer system pilin TraA | - |
| A5956_RS24835 () | 90827..91066 | - | 240 | WP_050481378.1 | conjugal transfer relaxosome protein TraY | - |
| A5956_RS00450 () | 91173..91820 | - | 648 | WP_000332526.1 | transcriptional regulator TraJ family protein | - |
| A5956_RS00455 () | 92014..92397 | - | 384 | WP_001151535.1 | relaxosome protein TraM | - |
| A5956_RS00460 () | 92673..93320 | + | 648 | WP_000602507.1 | hypothetical protein | VF |
| A5956_RS00465 () | 93616..94437 | - | 822 | WP_001234499.1 | DUF945 domain-containing protein | - |
| A5956_RS00470 () | 94556..94843 | - | 288 | WP_000107543.1 | hypothetical protein | - |
| A5956_RS00475 () | 95000..95302 | - | 303 | WP_001272236.1 | hypothetical protein | - |
| A5956_RS00485 () | 96229..96390 | - | 162 | WP_032327044.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 96455..96653 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 96455..96653 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 96455..96653 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - () | 96455..96653 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| A5956_RS00495 () | 96665..97384 | - | 720 | WP_032327045.1 | plasmid SOS inhibition protein A | - |
| A5956_RS00500 () | 97381..97815 | - | 435 | WP_032327046.1 | conjugation system SOS inhibitor PsiB | - |
| A5956_RS00505 () | 97870..99834 | - | 1965 | WP_064055974.1 | ParB/RepB/Spo0J family partition protein | - |
| A5956_RS00510 () | 99900..100133 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| A5956_RS00515 () | 100190..100729 | - | 540 | WP_032326923.1 | single-stranded DNA-binding protein | - |
| A5956_RS00520 () | 100755..100961 | - | 207 | WP_000547940.1 | hypothetical protein | - |
| A5956_RS27615 () | 101031..101558 | + | 528 | WP_064055975.1 | hypothetical protein | - |
| A5956_RS00530 () | 101528..101719 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| A5956_RS00535 () | 101716..102138 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| A5956_RS00540 () | 102185..102487 | - | 303 | WP_072148062.1 | antirestriction protein | - |
| A5956_RS27620 () | 103023..103799 | - | 777 | WP_001005035.1 | hypothetical protein | - |
| A5956_RS00550 () | 103845..104399 | - | 555 | WP_077248347.1 | DUF1380 family protein | - |
| A5956_RS00555 () | 104293..104514 | - | 222 | WP_001104870.1 | hypothetical protein | - |
| A5956_RS00560 () | 104515..105198 | - | 684 | WP_032326920.1 | DNA methylase | - |
| A5956_RS26480 () | 105275..105580 | - | 306 | WP_010891292.1 | hypothetical protein | - |
| A5956_RS00570 () | 105584..106483 | - | 900 | WP_077836284.1 | DUF1281 domain-containing protein | - |
| A5956_RS00575 () | 107135..108106 | - | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| A5956_RS00580 () | 108106..109272 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| A5956_RS00585 () | 109860..110615 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| A5956_RS00590 () | 111389..112195 | - | 807 | Protein_116 | phage integrase family protein | - |
| A5956_RS00595 () | 112196..112501 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| A5956_RS00600 () | 112503..112721 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| A5956_RS00605 () | 113301..114389 | + | 1089 | WP_028985936.1 | transcriptional repressor PifC | - |
| A5956_RS00610 () | 114391..116616 | + | 2226 | WP_028985935.1 | exclusion suppressor FxsA | - |
| A5956_RS00615 () | 116666..117565 | - | 900 | WP_032326914.1 | nucleotide-binding protein | - |
| A5956_RS00620 () | 117555..117872 | - | 318 | WP_064055977.1 | hypothetical protein | - |
| A5956_RS00625 () | 117855..118532 | + | 678 | WP_032327097.1 | IS66 family transposase ISCro1 | Transposase |
| A5956_RS00630 () | 118532..118879 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| A5956_RS00635 () | 118899..120470 | + | 1572 | WP_000381335.1 | IS66 family transposase ISCro1 | Transposase |
| A5956_RS00640 () | 122667..123308 | + | 642 | WP_028985818.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|