MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 67286 bp
Accession: NZ_CP015041 Location: 1..67286 Organism: Rhodovulum sp. P5 Replicon: plasmid pRGUI02
Accession: NZ_CP015041 Location: 1..67286 Organism: Rhodovulum sp. P5 Replicon: plasmid pRGUI02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RGUI_RS20260 () | 2319..3923 | - | 1605 | WP_081536287.1 | hypothetical protein | - |
| RGUI_RS20265 () | 3920..4885 | - | 966 | WP_081536288.1 | DUF58 domain-containing protein | - |
| RGUI_RS20270 () | 4889..5998 | - | 1110 | WP_081536289.1 | AAA family ATPase | - |
| RGUI_RS20280 () | 6859..7044 | - | 186 | WP_156883118.1 | hypothetical protein | - |
| RGUI_RS21610 () | 7590..7841 | + | 252 | WP_156883119.1 | hypothetical protein | - |
| RGUI_RS20285 () | 8154..8489 | + | 336 | WP_081536292.1 | DUF4236 domain-containing protein | - |
| RGUI_RS20290 () | 9123..10484 | + | 1362 | WP_081536293.1 | IS5 family transposase ISRhsp1 | Transposase |
| RGUI_RS20295 () | 10618..12333 | - | 1716 | WP_081536294.1 | hypothetical protein | - |
| RGUI_RS20300 () | 12444..12818 | + | 375 | WP_081536295.1 | hypothetical protein | - |
| RGUI_RS20305 () | 12919..13101 | - | 183 | Protein_10 | integrase | - |
| RGUI_RS20310 () | 13215..13469 | - | 255 | WP_172841228.1 | VPLPA-CTERM sorting domain-containing protein | - |
| RGUI_RS20315 () | 13716..14621 | - | 906 | WP_081536297.1 | CopD family protein | - |
| RGUI_RS20320 () | 14628..14984 | - | 357 | WP_081536298.1 | copper resistance protein CopC | - |
| RGUI_RS20325 () | 15061..15402 | - | 342 | WP_081536299.1 | copper-binding protein | - |
| RGUI_RS20330 () | 15436..18615 | - | 3180 | WP_081536300.1 | efflux RND transporter permease subunit | - |
| RGUI_RS20335 () | 18612..20804 | - | 2193 | WP_081536301.1 | efflux RND transporter periplasmic adaptor subunit | - |
| RGUI_RS21615 () | 21121..21441 | + | 321 | WP_156883121.1 | hypothetical protein | - |
| RGUI_RS20340 () | 21738..22496 | - | 759 | WP_081536341.1 | hypothetical protein | - |
| RGUI_RS20345 () | 22615..22959 | - | 345 | WP_081536302.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| RGUI_RS20350 () | 22971..23222 | - | 252 | WP_081536303.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RGUI_RS20355 () | 23542..24514 | - | 973 | Protein_21 | IS5 family transposase ISPko3 | Transposase |
| RGUI_RS20360 () | 24670..25071 | - | 402 | WP_172841229.1 | PIN domain-containing protein | Toxin Detail |
| RGUI_RS20365 () | 25064..25297 | - | 234 | WP_081536305.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| RGUI_RS20370 () | 25606..26808 | - | 1203 | Protein_24 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| RGUI_RS21810 () | 26731..27105 | + | 375 | WP_172841227.1 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| RGUI_RS20375 () | 27209..27616 | - | 408 | WP_081536306.1 | hypothetical protein | - |
| RGUI_RS20380 () | 27622..28014 | + | 393 | WP_081536307.1 | hypothetical protein | - |
| RGUI_RS20385 () | 28042..29403 | - | 1362 | WP_081536293.1 | IS5 family transposase ISRhsp1 | Transposase |
| RGUI_RS20390 () | 29507..29728 | + | 222 | WP_081536308.1 | hypothetical protein | - |
| RGUI_RS20395 () | 29893..31914 | - | 2022 | WP_172841230.1 | TonB-dependent receptor | - |
| RGUI_RS20400 () | 32178..32984 | - | 807 | WP_081536310.1 | Hemin import ATP-binding protein HmuV | VF |
| RGUI_RS20405 () | 32984..33976 | - | 993 | WP_172841232.1 | Hemin transport system permease protein HmuU | VF |
| RGUI_RS20410 () | 34062..34886 | - | 825 | WP_081536312.1 | Hemin-binding periplasmic protein HmuT | VF |
| RGUI_RS20415 () | 34886..35938 | - | 1053 | WP_081536313.1 | Hemin transport protein HemS | VF |
| RGUI_RS20420 () | 36310..36708 | + | 399 | WP_156883127.1 | hypothetical protein | - |
| RGUI_RS20425 () | 36705..37358 | + | 654 | WP_081536315.1 | MotA/TolQ/ExbB proton channel family protein | - |
| RGUI_RS20430 () | 37375..37728 | + | 354 | WP_081536316.1 | biopolymer transporter ExbD | - |
| RGUI_RS20435 () | 37725..38108 | + | 384 | WP_081536317.1 | biopolymer transporter ExbD | - |
| RGUI_RS20440 () | 38105..38923 | + | 819 | WP_081536318.1 | energy transducer TonB | - |
| RGUI_RS20445 () | 39150..39893 | - | 744 | WP_081536319.1 | hypothetical protein | - |
| RGUI_RS20450 () | 39984..41144 | - | 1161 | Protein_41 | hypothetical protein | - |
| RGUI_RS20455 () | 41417..41920 | - | 504 | WP_081536320.1 | cytochrome b/b6 domain-containing protein | - |
| RGUI_RS20460 () | 42249..42746 | + | 498 | WP_081536321.1 | twin-arginine translocation pathway signal | - |
| RGUI_RS20465 () | 42821..43333 | + | 513 | WP_081536322.1 | ferric reductase-like transmembrane domain-containing protein | - |
| RGUI_RS20470 () | 43706..44422 | + | 717 | WP_081536343.1 | c-type cytochrome | - |
| RGUI_RS20475 () | 44485..45750 | + | 1266 | WP_081536323.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| RGUI_RS21620 () | 46125..46295 | + | 171 | WP_156883123.1 | hypothetical protein | - |
| RGUI_RS20480 () | 46666..46920 | + | 255 | WP_081536344.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RGUI_RS20485 () | 46917..47324 | + | 408 | WP_081536324.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| RGUI_RS20490 () | 47392..48858 | - | 1467 | WP_156883128.1 | xylulokinase | - |
| RGUI_RS20495 () | 48919..49191 | - | 273 | WP_172841231.1 | hypothetical protein | - |
| RGUI_RS20500 () | 49259..50737 | - | 1479 | WP_081536327.1 | mannitol dehydrogenase family protein | - |
| RGUI_RS20505 () | 50766..51539 | - | 774 | WP_081536328.1 | Sorbitol dehydrogenase | VF |
| RGUI_RS20510 () | 51536..52549 | - | 1014 | WP_081536329.1 | Maltose/maltodextrin import ATP-binding protein MalK | VF |
| RGUI_RS20515 () | 52559..53389 | - | 831 | WP_081536330.1 | carbohydrate ABC transporter permease | - |
| RGUI_RS20520 () | 53400..54269 | - | 870 | WP_081536331.1 | sugar ABC transporter permease | - |
| RGUI_RS20525 () | 54372..55679 | - | 1308 | WP_081536332.1 | sugar ABC transporter substrate-binding protein | - |
| RGUI_RS20530 () | 55769..56800 | - | 1032 | WP_081536333.1 | LacI family transcriptional regulator | - |
| RGUI_RS20535 () | 56951..57319 | - | 369 | Protein_59 | IS21 family transposase ISAzs30 | Transposase |
| RGUI_RS20540 () | 57496..58725 | - | 1230 | WP_081536334.1 | hypothetical protein | - |
| RGUI_RS20545 () | 58794..59051 | + | 258 | WP_081536335.1 | helix-turn-helix domain-containing protein | - |
| RGUI_RS20550 () | 59337..59876 | + | 540 | WP_156883125.1 | SRPBCC domain-containing protein | - |
| RGUI_RS20555 () | 60130..63258 | - | 3129 | WP_081536337.1 | Efflux pump membrane transporter BepE | VF |
| RGUI_RS20560 () | 63255..64397 | - | 1143 | WP_081536338.1 | Efflux pump periplasmic linker BepD | VF |
| RGUI_RS20565 () | 64563..65060 | - | 498 | WP_081536339.1 | DUF4405 domain-containing protein | - |
| RGUI_RS21625 () | 65359..65499 | + | 141 | WP_156883126.1 | hypothetical protein | - |
| RGUI_RS20570 () | 65580..66494 | - | 915 | WP_081536340.1 | FAD:protein FMN transferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|