MGE detailed information
MGE type: Prophage MGE length: 22662 bp
Accession: NZ_CP014272 Location: 1515182..1537843 Organism: Escherichia coli K-12 strain K-12 C3026 Replicon: chromosome
Accession: NZ_CP014272 Location: 1515182..1537843 Organism: Escherichia coli K-12 strain K-12 C3026 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3026_RS07830 () | 1510732..1511964 | - | 1233 | WP_000628058.1 | diguanylate cyclase DgcM | - |
| C3026_RS28675 () | 1512158..1512205 | + | 48 | WP_211180494.1 | protein YnaN | - |
| C3026_RS07835 () | 1512219..1513202 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| C3026_RS07845 () | 1513680..1515053 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| C3026_RS07850 () | 1515182..1516117 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| C3026_RS25695 () | 1516169..1517404 | - | 1236 | WP_000040852.1 | DNA-directed RNA polymerase subunit omega ; Integrase | Integrase |
| C3026_RS07860 () | 1517406..1517621 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| C3026_RS07865 () | 1517700..1517909 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1517725..1517903 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1517725..1517903 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1517725..1517903 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1517725..1517903 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| C3026_RS07870 () | 1517902..1518096 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| C3026_RS07875 () | 1518153..1518962 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| C3026_RS07880 () | 1518955..1521555 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| C3026_RS07885 () | 1521657..1521932 | - | 276 | WP_000632297.1 | protein RacC | - |
| C3026_RS07890 () | 1522007..1522177 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| C3026_RS07895 () | 1522177..1522398 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| C3026_RS07900 () | 1522840..1523328 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| C3026_RS07905 () | 1523325..1523480 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| C3026_RS07910 () | 1523934..1524410 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| C3026_RS07915 () | 1524534..1524830 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| C3026_RS07920 () | 1524853..1525275 | + | 423 | WP_000693797.1 | phage protein | - |
| C3026_RS07925 () | 1525288..1526145 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| C3026_RS07930 () | 1526152..1526898 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| C3026_RS07935 () | 1526921..1527373 | + | 453 | Protein_1537 | DUF1627 domain-containing protein | - |
| C3026_RS27355 () | 1527569..1527754 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| C3026_RS07945 () | 1527951..1529408 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| C3026_RS07950 () | 1529546..1529809 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| C3026_RS07955 () | 1529790..1530149 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| C3026_RS07965 () | 1530623..1531555 | + | 933 | Protein_1542 | phage tail length tape measure family protein | - |
| C3026_RS07970 () | 1531558..1531773 | + | 216 | Protein_1543 | Ail/Lom family outer membrane beta-barrel protein | - |
| C3026_RS07975 () | 1531915..1532895 | - | 981 | WP_000019451.1 | IS5 family transposase ISKpn26 | Transposase |
| C3026_RS27360 () | 1532965..1533153 | + | 189 | Protein_1545 | Ail/Lom family outer membrane beta-barrel protein | - |
| C3026_RS25720 () | 1533218..1536580 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C3026_RS08000 () | 1536580..1537155 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| C3026_RS08005 () | 1537253..1537843 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| C3026_RS08010 () | 1538160..1538393 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| C3026_RS28060 () | 1538462..1538575 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| C3026_RS08015 () | 1539354..1539788 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| C3026_RS08020 () | 1539929..1541062 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0.001 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0.001 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0.001 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0.001 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0.001 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0.001 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0.001 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0.001 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0.001 |