MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP014270 Location: 1317105..1338779 Organism: Escherichia coli K-12 strain K-12 DHB4 Replicon: chromosome
Accession: NZ_CP014270 Location: 1317105..1338779 Organism: Escherichia coli K-12 strain K-12 DHB4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DHB4_RS27140 () | 1313094..1313141 | + | 48 | WP_211180494.1 | protein YnaN | - |
| DHB4_RS06605 () | 1313155..1314138 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| DHB4_RS06615 () | 1314616..1315989 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| DHB4_RS06620 () | 1316118..1317053 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| DHB4_RS24355 () | 1317105..1318340 | - | 1236 | WP_000040852.1 | site-specific integrase | - |
| DHB4_RS06630 () | 1318342..1318557 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| DHB4_RS06635 () | 1318636..1318845 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1318661..1318839 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1318661..1318839 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1318661..1318839 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1318661..1318839 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| DHB4_RS06640 () | 1318838..1319032 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| DHB4_RS06645 () | 1319089..1319898 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| DHB4_RS06650 () | 1319891..1322491 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| DHB4_RS06655 () | 1322593..1322868 | - | 276 | WP_000632297.1 | protein RacC | - |
| DHB4_RS06660 () | 1322943..1323113 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| DHB4_RS06665 () | 1323113..1323334 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| DHB4_RS06670 () | 1323776..1324264 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| DHB4_RS06675 () | 1324261..1324416 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| DHB4_RS06680 () | 1324870..1325346 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| DHB4_RS06685 () | 1325470..1325766 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| DHB4_RS06690 () | 1325789..1326211 | + | 423 | WP_000693797.1 | phage protein | - |
| DHB4_RS06695 () | 1326224..1327081 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| DHB4_RS06700 () | 1327088..1327834 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| DHB4_RS06705 () | 1327857..1328309 | + | 453 | Protein_1274 | DUF1627 domain-containing protein | - |
| DHB4_RS25905 () | 1328505..1328690 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| DHB4_RS06715 () | 1328887..1330344 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| DHB4_RS06720 () | 1330482..1330745 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| DHB4_RS06725 () | 1330726..1331085 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| DHB4_RS06735 () | 1331559..1332491 | + | 933 | Protein_1279 | phage tail length tape measure family protein | - |
| DHB4_RS06740 () | 1332494..1332709 | + | 216 | Protein_1280 | Ail/Lom family outer membrane beta-barrel protein | - |
| DHB4_RS06745 () | 1332851..1333831 | - | 981 | WP_000019451.1 | IS5-like element ISKpn26 family transposase | - |
| DHB4_RS25910 () | 1333901..1334089 | + | 189 | Protein_1282 | Ail/Lom family outer membrane beta-barrel protein | - |
| DHB4_RS24380 () | 1334154..1337516 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| DHB4_RS06770 () | 1337516..1338091 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| DHB4_RS06775 () | 1338189..1338779 | - | 591 | WP_000086527.1 | recombinase family protein | - |
| DHB4_RS06780 () | 1339096..1339329 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| DHB4_RS26515 () | 1339398..1339511 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| DHB4_RS06785 () | 1340290..1340724 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| DHB4_RS06790 () | 1340865..1341998 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |