MGE detailed information
MGE type: Conjugative plasmid MGE length: 145221 bp
Accession: NZ_CP013832 Location: 1..145221 Organism: Escherichia coli strain CD306 Replicon: plasmid pCD306
Accession: NZ_CP013832 Location: 1..145221 Organism: Escherichia coli strain CD306 Replicon: plasmid pCD306
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVR67_RS28775 () | 458..1154 | + | 697 | Protein_0 | IS1 family transposase | - |
| AVR67_RS25440 () | 1261..1695 | - | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| AVR67_RS25445 () | 1767..2117 | + | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| AVR67_RS25450 () | 2131..2406 | + | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| AVR67_RS25455 () | 2442..2864 | + | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| AVR67_RS25460 () | 2916..4609 | + | 1694 | Protein_5 | mercury(II) reductase | - |
| AVR67_RS25465 () | 4627..4989 | + | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| AVR67_RS25470 () | 4986..5222 | + | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| AVR67_RS25475 () | 5258..5926 | + | 669 | WP_001300294.1 | putative signaling protein | VF |
| AVR67_RS25480 () | 6001..7680 | + | 1680 | WP_000179844.1 | DDE-type integrase/transposase/recombinase | - |
| AVR67_RS25485 () | 7683..8543 | + | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
| AVR67_RS25490 () | 8594..10138 | - | 1545 | WP_000287615.1 | IS3 family transposase IS1353 | Transposase |
| AVR67_RS25495 () | 10261..11784 | + | 1524 | WP_001324342.1 | IS21 family transposase IS1326 | Transposase |
| AVR67_RS25500 () | 11774..12556 | + | 783 | WP_001163403.1 | IS21 family transposase IS1326 | Transposase |
| AVR67_RS25505 () | 12732..13232 | - | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| AVR67_RS25510 () | 13360..14199 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| AVR67_RS25515 () | 14193..14540 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| AVR67_RS25520 () | 14746..15534 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| AVR67_RS25525 () | 15665..16138 | - | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| AVR67_RS25530 () | 16296..17093 | + | 798 | Protein_19 | IS91 family transposase ISAzo26 | Transposase |
| AVR67_RS25535 () | 17146..17850 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| AVR67_RS25540 () | 18076..18891 | + | 816 | WP_012372823.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| AVR67_RS25545 () | 19238..21124 | + | 1887 | WP_000118029.1 | FTR1 family iron permease | - |
| AVR67_RS25550 () | 21165..21692 | + | 528 | WP_000178050.1 | iron transporter | - |
| AVR67_RS25555 () | 21796..23175 | + | 1380 | WP_000119836.1 | DUF2318 domain-containing protein | - |
| AVR67_RS25560 () | 23178..24461 | + | 1284 | WP_000964653.1 | ABC transporter permease | - |
| AVR67_RS25565 () | 24451..25581 | + | 1131 | WP_000729220.1 | ABC transporter permease | - |
| AVR67_RS25570 () | 25586..26281 | + | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| AVR67_RS25575 () | 26268..26753 | + | 486 | WP_001267177.1 | TlpA family protein disulfide reductase | - |
| AVR67_RS25580 () | 26778..27263 | + | 486 | WP_000874189.1 | hypothetical protein | - |
| AVR67_RS25585 () | 27385..27915 | + | 531 | Protein_30 | histidine-type phosphatase | - |
| AVR67_RS25590 () | 27973..28677 | - | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| AVR67_RS28110 () | 28702..29898 | + | 1197 | Protein_32 | IS3 family transposase | - |
| AVR67_RS25610 () | 29920..30153 | + | 234 | Protein_33 | Tn3 family transposase ISPsy39 | Transposase |
| AVR67_RS25615 () | 30230..30538 | + | 309 | Protein_34 | IS4 family transposase ISEc13 | Transposase |
| AVR67_RS25620 () | 30597..31907 | - | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
| AVR67_RS25625 () | 31900..32973 | - | 1074 | WP_000950177.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| AVR67_RS25630 () | 32979..33803 | - | 825 | WP_000922702.1 | phosphodiesterase | - |
| AVR67_RS25635 () | 33814..34701 | - | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
| AVR67_RS25640 () | 34691..35569 | - | 879 | WP_000338039.1 | sugar ABC transporter permease | - |
| AVR67_RS25645 () | 35700..36140 | - | 441 | Protein_40 | zinc-binding dehydrogenase | - |
| AVR67_RS25655 () | 36541..37431 | + | 891 | WP_001077068.1 | dihydrodipicolinate synthase family protein | - |
| AVR67_RS25660 () | 37456..37836 | + | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| AVR67_RS25665 () | 37869..38834 | + | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| AVR67_RS25670 () | 38880..39632 | - | 753 | WP_000562172.1 | IclR family transcriptional regulator | - |
| AVR67_RS25675 () | 40237..40521 | + | 285 | WP_001387467.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| AVR67_RS25680 () | 40521..40796 | + | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| AVR67_RS25685 () | 40902..41195 | + | 294 | WP_001105060.1 | hypothetical protein | - |
| AVR67_RS29360 () | 41230..41358 | - | 129 | Protein_48 | IS481 family transposase | - |
| AVR67_RS25690 () | 41391..42560 | - | 1170 | WP_001072355.1 | hypothetical protein | - |
| AVR67_RS25695 () | 43053..43360 | + | 308 | Protein_50 | type II toxin-antitoxin system ParD family antitoxin | - |
| AVR67_RS29365 () | 43703..43885 | + | 183 | WP_042344623.1 | hypothetical protein | - |
| AVR67_RS25710 () | 44006..44746 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| AVR67_RS25715 () | 45031..46008 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| AVR67_RS25730 () | 46754..47077 | + | 324 | Protein_54 | IS21 family transposase IS21 | Transposase |
| AVR67_RS29370 () | 47079..47183 | + | 105 | Protein_55 | AAA family ATPase | - |
| AVR67_RS25735 () | 47244..47757 | + | 514 | Protein_56 | DUF4113 domain-containing protein | - |
| AVR67_RS25740 () | 47937..48634 | - | 698 | Protein_57 | IS1 family transposase IS1S | Transposase |
| AVR67_RS25745 () | 48990..49904 | + | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| AVR67_RS25750 () | 49904..50731 | + | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| AVR67_RS25755 () | 50728..51585 | + | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| AVR67_RS25760 () | 51582..52439 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| AVR67_RS25765 () | 52928..53341 | + | 414 | Protein_62 | phosphopyruvate hydratase | - |
| AVR67_RS25775 () | 53682..54062 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| AVR67_RS25780 () | 54442..55635 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| AVR67_RS25785 () | 55771..57495 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| AVR67_RS25790 () | 57496..58442 | + | 947 | Protein_66 | N(6)-hydroxylysine O-acetyltransferase | VF |
| AVR67_RS25795 () | 58442..60184 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| AVR67_RS25800 () | 60181..61458 | + | 1278 | WP_000750130.1 | L-lysine N6-monooxygenase | VF |
| AVR67_RS25805 () | 61540..63741 | + | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| AVR67_RS25810 () | 64121..64818 | + | 698 | Protein_70 | IS1 family transposase IS1S | Transposase |
| AVR67_RS25820 () | 65072..66092 | - | 1021 | Protein_71 | DNA helicase UvrD | - |
| AVR67_RS25825 () | 66077..67642 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
| AVR67_RS25830 () | 67717..68133 | - | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| AVR67_RS25835 () | 68130..68360 | - | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| AVR67_RS26325 () | 68741..69766 | + | 1026 | Protein_75 | pcar | - |
| AVR67_RS25845 () | 69773..70470 | - | 698 | Protein_76 | IS1 family transposase | - |
| AVR67_RS25855 () | 70719..71120 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| AVR67_RS29375 () | 71053..71310 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| AVR67_RS25865 () | 71403..72056 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| AVR67_RS25870 () | 72155..75160 | - | 3006 | WP_001143760.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| AVR67_RS25875 () | 75324..75881 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| AVR67_RS25880 () | 76064..76924 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| AVR67_RS25885 () | 77950..78816 | - | 867 | WP_059218025.1 | incFII family plasmid replication initiator RepA | - |
| AVR67_RS25890 () | 78809..78883 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| AVR67_RS25895 () | 79108..79368 | - | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| AVR67_RS25900 () | 79608..80198 | - | 591 | WP_000766805.1 | DUF2726 domain-containing protein | - |
| AVR67_RS25905 () | 80236..80445 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| AVR67_RS25910 () | 80491..80952 | - | 462 | WP_001233838.1 | thermonuclease family protein | - |
| AVR67_RS25915 () | 81197..81409 | - | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| AVR67_RS25920 () | 81538..82098 | - | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| AVR67_RS25925 () | 82201..83061 | - | 861 | WP_000704528.1 | putative protein YcjY | VF |
| AVR67_RS25930 () | 83120..83866 | - | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| AVR67_RS25935 () | 83886..89156 | - | 5271 | WP_059218026.1 | Multifunctional conjugation protein TraI | Relaxase |
| AVR67_RS25940 () | 89156..91354 | - | 2199 | WP_000009360.1 | type IV conjugative transfer system coupling protein TraD | - |
| AVR67_RS25945 () | 91607..92338 | - | 732 | WP_000850422.1 | complement resistance protein TraT | - |
| AVR67_RS25950 () | 92370..92867 | - | 498 | WP_000605861.1 | hypothetical protein | - |
| AVR67_RS25955 () | 92886..95705 | - | 2820 | WP_001007057.1 | conjugal transfer mating pair stabilization protein TraG | - |
| AVR67_RS25960 () | 95702..97075 | - | 1374 | WP_001137364.1 | conjugal transfer protein TraH | - |
| AVR67_RS25970 () | 97328..97753 | + | 426 | WP_000422741.1 | IS66 family transposase ISEc23 | Transposase |
| AVR67_RS25975 () | 97750..98100 | + | 351 | WP_000624722.1 | IS66 family transposase ISEc23 | Transposase |
| AVR67_RS25980 () | 98131..99744 | + | 1614 | WP_000080195.1 | IS66 family transposase ISEc23 | Transposase |
| AVR67_RS25985 () | 99776..100027 | - | 252 | Protein_102 | F-type conjugal transfer protein TrbF | - |
| AVR67_RS28155 () | 99975..100316 | - | 342 | WP_001448115.1 | P-type conjugative transfer protein TrbJ | - |
| AVR67_RS25990 () | 100246..100791 | - | 546 | WP_000059824.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| AVR67_RS25995 () | 100778..101062 | - | 285 | WP_001448202.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| AVR67_RS26000 () | 101189..101527 | - | 339 | WP_001287905.1 | conjugal transfer protein TrbA | - |
| AVR67_RS26005 () | 101543..102286 | - | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| AVR67_RS26010 () | 102279..102536 | - | 258 | WP_000864320.1 | conjugal transfer protein TrbE | - |
| AVR67_RS26015 () | 102563..104371 | - | 1809 | WP_000821863.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| AVR67_RS26020 () | 104368..105006 | - | 639 | WP_001080257.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| AVR67_RS26025 () | 105015..105320 | - | 306 | WP_000224411.1 | hypothetical protein | - |
| AVR67_RS26030 () | 105350..106342 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| AVR67_RS26035 () | 106339..106971 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| AVR67_RS26040 () | 106968..107354 | - | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| AVR67_RS26045 () | 107351..109978 | - | 2628 | WP_001064239.1 | type IV secretion system protein TraC | - |
| AVR67_RS28160 () | 110138..110359 | - | 222 | WP_001278978.1 | conjugal transfer protein TraR | - |
| AVR67_RS26050 () | 110494..111009 | - | 516 | WP_000809893.1 | type IV conjugative transfer system lipoprotein TraV | - |
| AVR67_RS26055 () | 111006..111256 | - | 251 | Protein_118 | conjugal transfer protein TrbG | - |
| AVR67_RS26060 () | 111249..111602 | - | 354 | WP_071528018.1 | conjugal transfer protein TrbD | - |
| AVR67_RS26065 () | 111556..112140 | - | 585 | WP_000002795.1 | conjugal transfer protein TraP | - |
| AVR67_RS26070 () | 112130..113557 | - | 1428 | WP_000146638.1 | conjugal transfer protein TraB | - |
| AVR67_RS26075 () | 113557..114261 | - | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| AVR67_RS26080 () | 114272..114838 | - | 567 | WP_000399804.1 | type IV conjugative transfer system protein TraE | - |
| AVR67_RS26085 () | 114860..115171 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| AVR67_RS26090 () | 115176..115538 | - | 363 | WP_001098998.1 | type IV conjugative transfer system pilin TraA | - |
| AVR67_RS26095 () | 115572..115799 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| AVR67_RS26100 () | 115894..116580 | - | 687 | WP_000332487.1 | PAS domain-containing protein | - |
| AVR67_RS26105 () | 116774..117157 | - | 384 | WP_001151564.1 | relaxosome protein TraM | - |
| AVR67_RS26110 () | 117443..118090 | + | 648 | WP_000614282.1 | hypothetical protein | VF |
| AVR67_RS26115 () | 118387..119208 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| AVR67_RS26120 () | 119328..119615 | - | 288 | WP_000107537.1 | hypothetical protein | - |
| AVR67_RS26140 () | 120534..120692 | - | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 120736..120960 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 120736..120960 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 120736..120960 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - () | 120736..120960 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| AVR67_RS29580 () | 120772..120960 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| AVR67_RS26150 () | 120972..121691 | - | 720 | WP_001276234.1 | plasmid SOS inhibition protein A | - |
| AVR67_RS26155 () | 121688..122122 | - | 435 | WP_000845901.1 | conjugation system SOS inhibitor PsiB | - |
| AVR67_RS26160 () | 122177..124135 | - | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| AVR67_RS26165 () | 124194..124427 | - | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| AVR67_RS26170 () | 124483..125010 | - | 528 | WP_000290793.1 | single-stranded DNA-binding protein | - |
| AVR67_RS26175 () | 125874..126437 | - | 564 | WP_012783964.1 | class I SAM-dependent methyltransferase | - |
| AVR67_RS26180 () | 126484..127845 | - | 1362 | WP_000170728.1 | DUF3560 domain-containing protein | - |
| AVR67_RS26185 () | 127897..128127 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| AVR67_RS26190 () | 129162..129353 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| AVR67_RS26195 () | 129350..129772 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| AVR67_RS26200 () | 129819..130121 | - | 303 | WP_001671341.1 | antirestriction protein | - |
| AVR67_RS29405 () | 130661..131437 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| AVR67_RS26210 () | 131488..131922 | - | 435 | WP_000274437.1 | DUF1380 family protein | - |
| AVR67_RS26215 () | 131936..132157 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| AVR67_RS26220 () | 132158..132841 | - | 684 | WP_000086185.1 | DNA methylase | - |
| AVR67_RS28830 () | 132918..133222 | - | 305 | Protein_149 | hypothetical protein | - |
| AVR67_RS26230 () | 133226..134128 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| AVR67_RS26235 () | 134995..135966 | - | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| AVR67_RS26240 () | 135966..137132 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| AVR67_RS26245 () | 137720..138475 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| AVR67_RS26250 () | 139249..140055 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| AVR67_RS26255 () | 140056..140361 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| AVR67_RS26260 () | 140363..140581 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| AVR67_RS26265 () | 141127..141639 | + | 513 | WP_000151784.1 | hypothetical protein | - |
| AVR67_RS26270 () | 141673..142806 | - | 1134 | WP_000545986.1 | DUF3800 domain-containing protein | - |
| AVR67_RS26275 () | 142973..143746 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| AVR67_RS26280 () | 143759..144259 | - | 501 | WP_000528932.1 | hypothetical protein | - |
| AVR67_RS26285 () | 144524..144754 | + | 231 | WP_001261278.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| AVR67_RS26290 () | 144751..145167 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|