MGE detailed information
MGE type: Mobilizable plasmid MGE length: 73561 bp
Accession: NZ_CP013267 Location: 1..73561 Organism: Sphingobium baderi strain DE-13 Replicon: plasmid pDE3
Accession: NZ_CP013267 Location: 1..73561 Organism: Sphingobium baderi strain DE-13 Replicon: plasmid pDE3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ATN00_RS21750 () | 91..678 | + | 588 | WP_062069471.1 | hypothetical protein | - |
| ATN00_RS21755 () | 777..1796 | + | 1020 | WP_148564656.1 | ATPase | - |
| ATN00_RS21760 () | 1789..3072 | + | 1284 | WP_024021623.1 | hypothetical protein | - |
| ATN00_RS21765 () | 3145..4026 | - | 882 | WP_024021624.1 | ImmA/IrrE family metallo-endopeptidase | - |
| ATN00_RS21770 () | 4026..4346 | - | 321 | WP_024021625.1 | helix-turn-helix domain-containing protein | - |
| ATN00_RS21775 () | 4483..4698 | + | 216 | WP_024021626.1 | hypothetical protein | - |
| ATN00_RS21780 () | 4717..4980 | + | 264 | WP_024021627.1 | DUF3892 domain-containing protein | - |
| ATN00_RS21785 () | 5008..5562 | - | 555 | WP_037531232.1 | hypothetical protein | - |
| ATN00_RS21790 () | 5749..8664 | - | 2916 | WP_048578474.1 | Ti-type conjugative transfer relaxase TraA | - |
| ATN00_RS21795 () | 8807..9235 | + | 429 | WP_048575094.1 | hypothetical protein | - |
| ATN00_RS21800 () | 9251..10150 | - | 900 | WP_053085604.1 | cell wall hydrolase | - |
| ATN00_RS21805 () | 10160..10690 | - | 531 | WP_048575093.1 | S26 family signal peptidase | - |
| ATN00_RS21810 () | 10687..11016 | - | 330 | WP_048575092.1 | hypothetical protein | - |
| ATN00_RS21815 () | 11013..11693 | - | 681 | WP_048575091.1 | AAA family ATPase | - |
| ATN00_RS21820 () | 12094..12351 | + | 258 | WP_048575090.1 | antitoxin | Antitoxin Detail |
| ATN00_RS21825 () | 12348..12674 | + | 327 | WP_048575089.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| ATN00_RS21830 () | 12738..13043 | - | 306 | WP_030091807.1 | putative addiction module antidote protein | Antitoxin Detail |
| ATN00_RS21835 () | 13036..13344 | - | 309 | WP_030091808.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ATN00_RS21840 () | 13454..14107 | - | 654 | WP_048575088.1 | hypothetical protein | - |
| ATN00_RS21845 () | 14104..14937 | - | 834 | WP_140404624.1 | hypothetical protein | - |
| ATN00_RS21850 () | 15595..15885 | + | 291 | WP_062069476.1 | hypothetical protein | - |
| ATN00_RS21855 () | 15971..16297 | - | 327 | WP_048575085.1 | single-stranded DNA-binding protein | - |
| ATN00_RS21860 () | 16586..17188 | - | 603 | WP_048575084.1 | recombinase family protein | - |
| ATN00_RS23820 () | 17196..17432 | - | 237 | WP_148564653.1 | hypothetical protein | - |
| ATN00_RS21870 () | 17627..17821 | - | 195 | WP_156415414.1 | hypothetical protein | - |
| ATN00_RS23160 () | 17911..18662 | + | 752 | WP_156028722.1 | IS5 family transposase | - |
| ATN00_RS23530 () | 18659..18814 | - | 156 | WP_156415416.1 | hypothetical protein | - |
| ATN00_RS21885 () | 18989..19339 | + | 351 | WP_048575081.1 | hypothetical protein | - |
| ATN00_RS21890 () | 19611..20597 | - | 987 | WP_048575080.1 | toprim domain-containing protein | - |
| ATN00_RS21895 () | 20594..21184 | - | 591 | WP_148564659.1 | thermonuclease family protein | - |
| ATN00_RS21900 () | 21181..21519 | - | 339 | WP_082165952.1 | hypothetical protein | - |
| ATN00_RS21905 () | 21547..21813 | - | 267 | WP_048575079.1 | hypothetical protein | - |
| ATN00_RS21910 () | 21810..22001 | - | 192 | WP_048575078.1 | hypothetical protein | - |
| ATN00_RS21915 () | 22097..22591 | - | 495 | WP_048575077.1 | hypothetical protein | - |
| ATN00_RS21920 () | 22588..23118 | - | 531 | WP_082166272.1 | hypothetical protein | - |
| ATN00_RS21925 () | 23300..23491 | - | 192 | WP_048575075.1 | hypothetical protein | - |
| ATN00_RS21930 () | 23734..23973 | + | 240 | WP_048575116.1 | helix-turn-helix domain-containing protein | - |
| ATN00_RS21935 () | 24023..24820 | - | 798 | WP_053085603.1 | DUF3768 domain-containing protein | - |
| ATN00_RS21940 () | 24823..25614 | - | 792 | WP_048575074.1 | hypothetical protein | - |
| ATN00_RS21945 () | 25619..25810 | - | 192 | WP_048575073.1 | hypothetical protein | - |
| ATN00_RS21950 () | 26246..27739 | + | 1494 | WP_011950768.1 | IS21 family transposase | - |
| ATN00_RS21955 () | 27736..28503 | + | 768 | WP_007686288.1 | IS21-like element ISSsp5 family helper ATPase IstB | - |
| ATN00_RS21960 () | 28775..29149 | + | 375 | WP_062069482.1 | EthD domain-containing protein | - |
| ATN00_RS21965 () | 29491..31041 | - | 1551 | WP_062069485.1 | cryptochrome/photolyase family protein | - |
| ATN00_RS21970 () | 31244..31633 | + | 390 | WP_082635370.1 | PRC-barrel domain-containing protein | - |
| ATN00_RS21975 () | 31633..32337 | + | 705 | WP_082635369.1 | hypothetical protein | - |
| ATN00_RS21980 () | 32394..33887 | + | 1494 | WP_011950768.1 | IS21 family transposase | - |
| ATN00_RS21985 () | 33884..34651 | + | 768 | WP_007686288.1 | IS21-like element ISSsp5 family helper ATPase IstB | - |
| ATN00_RS21990 () | 34960..35787 | - | 828 | WP_048575072.1 | helix-turn-helix domain-containing protein | - |
| ATN00_RS21995 () | 35978..36256 | - | 279 | WP_048575071.1 | hypothetical protein | - |
| ATN00_RS22000 () | 36331..36573 | - | 243 | WP_053085602.1 | DUF2274 domain-containing protein | - |
| ATN00_RS22005 () | 36577..36903 | - | 327 | WP_048575070.1 | hypothetical protein | - |
| ATN00_RS22010 () | 36963..38063 | - | 1101 | WP_062069494.1 | TrbI/VirB10 family protein | - |
| ATN00_RS22015 () | 38229..41102 | + | 2874 | WP_062069497.1 | Tn3 family transposase | - |
| ATN00_RS22020 () | 41121..41885 | - | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| ATN00_RS22025 () | 41948..42175 | + | 228 | Protein_56 | hypothetical protein | - |
| ATN00_RS22030 () | 42162..42881 | + | 720 | WP_006964394.1 | IncP-type conjugative transfer protein TrbF | - |
| ATN00_RS22035 () | 42899..43882 | + | 984 | WP_006964392.1 | P-type conjugative transfer protein TrbG | - |
| ATN00_RS22040 () | 43885..44658 | + | 774 | WP_081876351.1 | SPOR domain-containing protein | - |
| ATN00_RS22045 () | 44689..46038 | + | 1350 | WP_019053954.1 | hypothetical protein | - |
| ATN00_RS22050 () | 46064..46819 | + | 756 | WP_022675885.1 | P-type conjugative transfer protein TrbJ | - |
| ATN00_RS22055 () | 46829..47071 | + | 243 | WP_019053956.1 | EexN family lipoprotein | - |
| ATN00_RS22060 () | 47082..48797 | + | 1716 | WP_030092735.1 | P-type conjugative transfer protein TrbL | - |
| ATN00_RS22065 () | 48800..49912 | + | 1113 | WP_030092736.1 | muramidase | - |
| ATN00_RS22070 () | 49933..50232 | - | 300 | WP_013041567.1 | hypothetical protein | - |
| ATN00_RS22075 () | 50225..50467 | - | 243 | WP_013041566.1 | hypothetical protein | - |
| ATN00_RS22080 () | 50467..50793 | - | 327 | WP_006964370.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| ATN00_RS22085 () | 50790..51164 | - | 375 | WP_013041565.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ATN00_RS22090 () | 51586..51840 | + | 255 | WP_013041563.1 | hypothetical protein | - |
| ATN00_RS22095 () | 52171..53286 | - | 1116 | WP_030092861.1 | IS110 family transposase | - |
| ATN00_RS22100 () | 53363..56341 | - | 2979 | WP_062069500.1 | Tn3 family transposase | - |
| ATN00_RS22105 () | 56884..59412 | + | 2529 | WP_062069503.1 | TonB-dependent receptor | - |
| ATN00_RS22110 () | 59493..60248 | - | 756 | WP_037523630.1 | SDR family oxidoreductase | - |
| ATN00_RS22115 () | 60331..61197 | - | 867 | WP_006961816.1 | recombinase family protein | - |
| ATN00_RS22120 () | 61480..62244 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| ATN00_RS22125 () | 62311..63648 | - | 1338 | WP_048575154.1 | M1 family metallopeptidase | - |
| ATN00_RS22130 () | 63726..64322 | - | 597 | WP_048575153.1 | recombinase family protein | - |
| ATN00_RS22135 () | 64471..65952 | + | 1482 | WP_053085608.1 | DDE-type integrase/transposase/recombinase | - |
| ATN00_RS22140 () | 65952..66773 | + | 822 | WP_042853443.1 | ATP-binding protein | - |
| ATN00_RS22145 () | 66884..67426 | + | 543 | Protein_80 | recombinase family protein | - |
| ATN00_RS22150 () | 67546..68625 | + | 1080 | WP_024021619.1 | DNA adenine methylase | - |
| ATN00_RS22155 () | 68622..70832 | + | 2211 | WP_024021620.1 | type II restriction endonuclease | - |
| ATN00_RS22160 () | 70992..71357 | + | 366 | WP_062068004.1 | transposase | - |
| ATN00_RS22165 () | 71354..71695 | + | 342 | WP_062068002.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ATN00_RS22170 () | 71769..73412 | + | 1644 | WP_062068000.1 | IS66 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|