NZ_CP013264112541..293149

MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 180609 bp
Accession: NZ_CP013264        Location: 112541..293149         Organism: Sphingobium baderi strain DE-13       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ATN00_RS00570 () 108241..108507 + 267 WP_062060891.1 head-tail connector protein -
ATN00_RS23245 () 108507..108752 + 246 WP_062060893.1 hypothetical protein -
ATN00_RS00580 () 108734..109813 + 1080 WP_082635045.1 hypothetical protein -
ATN00_RS00590 () 110006..111772 - 1767 WP_062068226.1 single-stranded-DNA-specific exonuclease RecJ -
ATN00_RS00595 () 111936..114026 + 2091 WP_062060899.1 BamA/TamA family outer membrane protein -
ATN00_RS00600 () 114026..118219 + 4194 WP_062060903.1 translocation/assembly module TamB domain-containing protein -
ATN00_RS00605 () 118365..120152 + 1788 WP_062060906.1 Multidrug resistance ABC transporter ATP-binding/permease protein BmrA VF
ATN00_RS00610 () 120191..120538 - 348 WP_197413638.1 PilZ domain-containing protein -
ATN00_RS00615 () 120707..121129 - 423 WP_062060909.1 biopolymer transporter ExbD -
ATN00_RS00620 () 121151..121639 - 489 WP_062060912.1 biopolymer transporter ExbD -
ATN00_RS00625 () 121753..122511 - 759 WP_062060915.1 MotA/TolQ/ExbB proton channel family protein -
ATN00_RS00630 () 122586..123239 - 654 WP_062060919.1 energy transducer TonB -
ATN00_RS00635 () 123495..124388 + 894 WP_197413722.1 hypothetical protein -
ATN00_RS00640 () 124469..125773 + 1305 WP_062060922.1 homoserine dehydrogenase -
ATN00_RS00645 () 126118..127101 + 984 WP_062068232.1 class II fructose-bisphosphatase -
ATN00_RS00650 () 127244..127621 - 378 WP_062060925.1 MerC domain-containing protein -
ATN00_RS00655 () 127710..129485 - 1776 WP_062060928.1 diguanylate cyclase -
ATN00_RS00660 () 129602..131101 - 1500 WP_062060931.1 Catalase VF
ATN00_RS00665 () 131201..132667 - 1467 WP_062060934.1 glycerol kinase -
ATN00_RS00670 () 132664..134148 - 1485 WP_082635275.1 glycerol-3-phosphate dehydrogenase -
ATN00_RS00675 () 134324..134704 - 381 WP_062060940.1 ATP-dependent Clp protease adapter ClpS -
ATN00_RS00680 () 134877..138350 - 3474 WP_062060943.1 error-prone DNA polymerase -
ATN00_RS00685 () 138347..139951 - 1605 WP_197413639.1 DNA polymerase Y family protein -
ATN00_RS00690 () 139839..140654 - 816 WP_062068234.1 hypothetical protein -
ATN00_RS00695 () 140737..141516 - 780 WP_062060949.1 transglutaminase family protein -
ATN00_RS00700 () 142052..143125 - 1074 WP_062060953.1 recombinase RecA -
ATN00_RS00705 () 143225..143584 - 360 WP_062060957.1 response regulator -
ATN00_RS00710 () 143667..145220 - 1554 Protein_139 response regulator -
ATN00_RS00715 () 145276..146040 - 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
ATN00_RS00720 () 146102..147316 - 1215 Protein_141 Type IV secretion system protein virB4 VF
ATN00_RS00725 () 147309..147632 - 324 WP_062060961.1 Type IV secretion system protein virB3 VF
ATN00_RS00730 () 147714..148028 - 315 WP_082635276.1 TrbC/VirB2 family protein -
ATN00_RS00735 () 148076..148789 - 714 WP_062060964.1 Type IV secretion system protein virB1 VF
ATN00_RS23250 () 148995..149282 - 288 WP_062060967.1 hypothetical protein -
ATN00_RS00745 () 149570..150259 + 690 WP_062068238.1 toprim domain-containing protein -
ATN00_RS00750 () 150298..150855 + 558 WP_062068240.1 thermonuclease family protein -
ATN00_RS00755 () 151148..151429 + 282 WP_062068242.1 hypothetical protein -
ATN00_RS00760 () 151515..152207 + 693 WP_062060970.1 hypothetical protein -
ATN00_RS00765 () 152270..152548 + 279 WP_082635046.1 type II toxin-antitoxin system ParD family antitoxin -
ATN00_RS00770 () 152548..152844 + 297 WP_062060973.1 type II toxin-antitoxin system RelE/ParE family toxin -
ATN00_RS00775 () 152973..154481 - 1509 WP_062060976.1 FAD-dependent oxidoreductase -
ATN00_RS00780 () 154841..155179 - 339 WP_062060979.1 DUF423 domain-containing protein -
ATN00_RS00785 () 155337..155540 - 204 WP_062060982.1 hypothetical protein -
ATN00_RS00790 () 155761..156228 - 468 WP_062060985.1 hypothetical protein -
ATN00_RS00795 () 156299..157063 + 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
ATN00_RS22655 () 157117..157674 - 558 Protein_157 CoA transferase -
ATN00_RS00805 () 157865..158341 - 477 WP_051743924.1 FadR family transcriptional regulator -
ATN00_RS00810 () 158410..159630 + 1221 WP_062060991.1 acyl-CoA dehydrogenase family protein -
ATN00_RS00815 () 159961..161001 + 1041 WP_197413640.1 iron-containing alcohol dehydrogenase -
ATN00_RS00820 () 161184..162548 - 1365 WP_013039168.1 transposase -
ATN00_RS00825 () 162647..163117 + 471 WP_062060998.1 transporter -
ATN00_RS00830 () 163163..163498 + 336 WP_081876336.1 transporter -
ATN00_RS00835 () 164175..164621 + 447 WP_158500940.1 flavin reductase family protein -
ATN00_RS00840 () 164908..165845 - 938 Protein_165 IS110 family transposase ISCc4 Transposase
ATN00_RS00845 () 166626..166832 + 207 WP_048574815.1 dodecin family protein -
ATN00_RS00850 () 167303..167533 + 231 Protein_167 IS256 family transposase ISMtsp13 Transposase
ATN00_RS00855 () 167722..169227 + 1506 WP_030092541.1 IS21 family transposase ISBj11 Transposase
ATN00_RS00860 () 169224..170093 + 870 WP_062061004.1 IS21 family transposase ISRel5 Transposase
ATN00_RS00865 () 170224..171846 + 1623 WP_030539573.1 ISNCY family transposase ISBj12 Transposase
ATN00_RS00880 () 173523..174362 + 840 WP_030091690.1 alpha/beta fold hydrolase -
ATN00_RS00885 () 174441..175085 + 645 WP_197413641.1 VOC family protein -
ATN00_RS00890 () 175086..176324 + 1239 WP_048575098.1 iron-containing alcohol dehydrogenase -
ATN00_RS00895 () 176419..176817 + 399 WP_062061007.1 alpha/beta fold hydrolase -
ATN00_RS00900 () 176783..177547 + 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
ATN00_RS00905 () 177601..178110 + 510 Protein_177 IS6 family transposase IS6100 Transposase
ATN00_RS00910 () 178150..179382 - 1233 Protein_178 hypothetical protein -
ATN00_RS00915 () 179379..180728 - 1350 WP_062061010.1 Tyrosine recombinase XerC ; Integrase Integrase
ATN00_RS22660 () 180885..181612 - 728 Protein_180 DUF1738 domain-containing protein -
ATN00_RS00930 () 182057..183127 - 1071 WP_030093123.1 phosphotransferase -
ATN00_RS00935 () 183124..184314 - 1191 WP_030093124.1 acyl-CoA dehydrogenase family protein -
ATN00_RS00940 () 184334..185089 - 756 WP_030093125.1 Gluconate 5-dehydrogenase VF
ATN00_RS00945 () 185192..185956 - 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
ATN00_RS00950 () 186091..187269 - 1179 WP_062061016.1 hypothetical protein -
ATN00_RS00955 () 187600..188109 - 510 WP_197413642.1 hypothetical protein -
ATN00_RS00960 () 188106..189242 - 1137 WP_062061019.1 phosphotransferase family protein -
ATN00_RS00965 () 189345..190394 - 1050 WP_030092905.1 TIGR03857 family LLM class F420-dependent oxidoreductase -
ATN00_RS00975 () 190732..191799 - 1068 WP_081876369.1 hypothetical protein -
ATN00_RS23255 () 191845..192000 - 156 WP_156415186.1 hypothetical protein -
ATN00_RS00980 () 192138..192530 - 393 WP_062061022.1 TonB-dependent receptor -
ATN00_RS00985 () 192611..193375 - 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
ATN00_RS00990 () 193966..195117 - 1152 WP_197413643.1 CoA transferase -
ATN00_RS00995 () 195251..196441 - 1191 WP_030092753.1 iron-containing alcohol dehydrogenase -
ATN00_RS01000 () 196704..198317 - 1614 WP_062061025.1 AMP-binding protein -
ATN00_RS01005 () 198402..199550 - 1149 WP_030092751.1 Acyl-CoA dehydrogenase VF
ATN00_RS01010 () 199660..200454 - 795 WP_030092750.1 enoyl-CoA hydratase/isomerase family protein -
ATN00_RS01015 () 200849..202090 + 1242 WP_030092749.1 thiolase family protein -
ATN00_RS01020 () 202105..202881 + 777 WP_030092748.1 SDR family NAD(P)-dependent oxidoreductase -
ATN00_RS01025 () 203003..205912 + 2910 WP_006961814.1 Tn3 family transposase TnpA_ISYps3 Transposase
ATN00_RS01030 () 206055..206921 + 867 WP_006961816.1 Tn3 family transposase TnpR_ISThsp9 Transposase
ATN00_RS01035 () 207139..207423 - 285 WP_062061028.1 hypothetical protein -
ATN00_RS01040 () 207423..208058 - 636 WP_062061031.1 Chromosome-partitioning ATPase Soj VF
ATN00_RS01045 () 208176..208801 - 626 Protein_204 transcription elongation protein SprT -
ATN00_RS01060 () 209809..211425 + 1617 WP_062061041.1 glycosyltransferase family 2 protein -
ATN00_RS23260 () 211443..212201 - 759 WP_156415189.1 hypothetical protein -
ATN00_RS01070 () 212283..212849 + 567 Protein_208 phytanoyl-CoA dioxygenase family protein -
ATN00_RS01075 () 212911..213117 + 207 Protein_209 IS5 family transposase IS1248B Transposase
ATN00_RS23265 () 213189..213338 + 150 Protein_210 IS110 family transposase -
ATN00_RS01080 () 213367..216258 - 2892 WP_016746447.1 Tn3 family transposase TnpA_ISRsp12 Transposase
ATN00_RS01085 () 216384..217004 + 621 WP_008832583.1 Tn3 family transposase TnpR_ISMex22 Transposase
ATN00_RS01090 () 217001..217531 + 531 WP_062061046.1 GNAT family N-acetyltransferase -
ATN00_RS01095 () 217589..218223 + 635 Protein_214 IS110 family transposase ISAzs35 Transposase
ATN00_RS01100 () 218566..219126 - 561 WP_062061052.1 Tn3 family transposase TnpR_TnAs3 Transposase
ATN00_RS01105 () 219517..219795 + 279 WP_062061055.1 CopG family ribbon-helix-helix protein Antitoxin Detail
ATN00_RS01110 () 219783..220076 + 294 WP_059153568.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
ATN00_RS23270 () 220095..220190 + 96 Protein_218 histidine phosphatase family protein -
ATN00_RS22680 () 220205..220486 - 282 WP_082635049.1 WGR domain-containing protein -
ATN00_RS01125 () 220923..222296 - 1374 WP_062061067.1 DUF2384 domain-containing protein -
ATN00_RS01135 () 222777..223775 - 999 WP_156415190.1 Tyrosine recombinase XerC ; Integrase Integrase
ATN00_RS01140 () 223736..224107 - 372 WP_030092871.1 hypothetical protein -
ATN00_RS01145 () 224141..224506 - 366 WP_030092870.1 hypothetical protein -
ATN00_RS01150 () 224503..224835 - 333 WP_030092869.1 hypothetical protein -
ATN00_RS01155 () 224866..225096 - 231 WP_030092868.1 BrnA antitoxin family protein -
ATN00_RS22695 () 225083..225356 - 274 Protein_226 BrnT family toxin -
ATN00_RS01165 () 225496..226065 - 570 WP_062061072.1 PIN domain-containing protein Toxin Detail
ATN00_RS01170 () 226062..226526 - 465 WP_030092865.1 helix-turn-helix domain-containing protein Antitoxin Detail
ATN00_RS01175 () 226721..227029 + 309 WP_062061074.1 BrnT family toxin Toxin Detail
ATN00_RS01180 () 227010..227342 + 333 WP_062061077.1 BrnA antitoxin family protein Antitoxin Detail
ATN00_RS01185 () 227346..227603 + 258 Protein_231 DUF2442 domain-containing protein -
ATN00_RS01190 () 227632..228351 - 720 WP_062061080.1 hypothetical protein -
ATN00_RS01195 () 228348..228782 - 435 WP_062061082.1 putative toxin-antitoxin system toxin component, PIN family -
ATN00_RS01200 () 228786..229031 - 246 WP_197413644.1 ribbon-helix-helix domain-containing protein -
ATN00_RS01205 () 229094..232255 - 3162 WP_062061085.1 Ti-type conjugative transfer relaxase TraA -
ATN00_RS01210 () 232429..232677 + 249 WP_062061088.1 conjugal transfer protein TraD -
ATN00_RS01215 () 232772..233002 + 231 WP_062068250.1 conjugal transfer protein TraD -
ATN00_RS01220 () 232995..233549 + 555 WP_062061091.1 AAA family ATPase -
ATN00_RS01225 () 233542..233805 + 264 WP_062061094.1 hypothetical protein -
ATN00_RS01230 () 233807..235471 + 1665 WP_062061097.1 type IV secretory system conjugative DNA transfer family protein -
ATN00_RS01235 () 236572..237438 - 867 WP_006961816.1 Tn3 family transposase TnpR_ISThsp9 Transposase
ATN00_RS01240 () 237581..240490 - 2910 WP_006961814.1 Tn3 family transposase TnpA_ISYps3 Transposase
ATN00_RS01245 () 240613..241620 + 1008 Protein_243 replication initiator protein A -
ATN00_RS01250 () 241683..242000 - 318 WP_030093241.1 hypothetical protein -
ATN00_RS01255 () 241997..242650 - 654 WP_044663650.1 Chromosome-partitioning ATPase Soj VF
ATN00_RS23280 () 242748..242906 - 159 WP_156415192.1 hypothetical protein -
ATN00_RS01260 () 243039..243320 + 282 WP_017501687.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
ATN00_RS01265 () 243289..243609 + 321 WP_062061101.1 type II toxin-antitoxin system YafQ family toxin -
ATN00_RS01270 () 243612..244232 + 621 WP_062061104.1 phosphoglycerate mutase family protein -
ATN00_RS01275 () 244229..244711 - 483 WP_082635050.1 Tyrosine recombinase XerD ; Integrase Integrase
ATN00_RS01280 () 244775..245539 - 765 WP_001389365.1 IS6 family transposase IS6100 Transposase
ATN00_RS01285 () 245596..246477 - 882 Protein_252 hybrid sensor histidine kinase/response regulator -
ATN00_RS01290 () 246527..247117 - 591 WP_062068254.1 DUF2062 domain-containing protein -
ATN00_RS01295 () 247135..247617 - 483 WP_062061107.1 SsrA-binding protein SmpB -
ATN00_RS01300 () 247666..248544 - 879 WP_062061110.1 4-hydroxy-tetrahydrodipicolinate synthase -
ATN00_RS01305 () 248693..250741 + 2049 WP_156415193.1 lytic transglycosylase domain-containing protein -
ATN00_RS01310 () 250762..251244 + 483 WP_062061115.1 transcription elongation factor GreB -
ATN00_RS01315 () 251413..251922 + 510 WP_062068256.1 YfiR family protein -
ATN00_RS01320 () 251926..253146 + 1221 WP_062061119.1 Diguanylate cyclase DgcN VF
ATN00_RS01325 () 253166..253696 + 531 WP_082635280.1 Peptidoglycan-binding protein ArfA VF
ATN00_RS01330 () 253708..255021 - 1314 Protein_261 Methyl-accepting chemotaxis protein McpA VF
ATN00_RS01335 () 255095..255889 - 795 WP_062061124.1 polyphosphate kinase -
ATN00_RS01340 () 255983..257767 - 1785 WP_062061127.1 aspartate--tRNA ligase -
ATN00_RS01345 () 257896..259071 + 1176 WP_062061131.1 ribonuclease D -
ATN00_RS01350 () 259073..259369 + 297 WP_082635051.1 peptidase inhibitor I78 -
ATN00_RS01355 () 259421..260104 - 684 WP_062068260.1 hypothetical protein -
ATN00_RS01360 () 260266..260652 - 387 WP_062061135.1 PH domain-containing protein -
ATN00_RS01365 () 260778..261344 + 567 WP_062061137.1 hypothetical protein -
ATN00_RS01370 () 261354..263159 - 1806 WP_062068262.1 translation elongation factor 4 -
ATN00_RS01375 () 263339..264109 + 771 WP_062068264.1 penicillin-binding protein activator LpoB -
ATN00_RS01380 () 264164..265201 - 1038 WP_062061140.1 acyltransferase -
ATN00_RS01385 () 265287..265851 - 565 Protein_272 ATPase -
ATN00_RS01390 () 265889..266545 - 657 WP_062061143.1 adenylate kinase -
ATN00_RS01395 () 266590..267954 - 1365 WP_062061145.1 preprotein translocase subunit SecY -
ATN00_RS01400 () 268147..268668 - 522 WP_062061148.1 50S ribosomal protein L15 -
ATN00_RS01405 () 268800..268991 - 192 WP_062061151.1 50S ribosomal protein L30 -
ATN00_RS01410 () 268997..269707 - 711 WP_082635052.1 30S ribosomal protein S5 -
ATN00_RS01415 () 269710..270063 - 354 WP_062061154.1 50S ribosomal protein L18 -
ATN00_RS01420 () 270065..270598 - 534 WP_062061158.1 50S ribosomal protein L6 -
ATN00_RS01425 () 270598..270993 - 396 WP_062061165.1 30S ribosomal protein S8 -
ATN00_RS01430 () 271006..271311 - 306 WP_007686564.1 30S ribosomal protein S14 -
ATN00_RS01435 () 271365..271940 - 576 WP_062061168.1 50S ribosomal protein L5 -
ATN00_RS01440 () 271940..272251 - 312 WP_062061171.1 50S ribosomal protein L24 -
ATN00_RS01445 () 272251..272619 - 369 WP_021244954.1 50S ribosomal protein L14 -
ATN00_RS01450 () 272805..273068 - 264 WP_062061174.1 30S ribosomal protein S17 -
ATN00_RS01455 () 273083..273286 - 204 WP_021244952.1 50S ribosomal protein L29 -
ATN00_RS01460 () 273290..273721 - 432 WP_037472393.1 50S ribosomal protein L16 -
ATN00_RS01465 () 273743..274438 - 696 WP_062061177.1 30S ribosomal protein S3 -
ATN00_RS01470 () 274443..274829 - 387 WP_021244949.1 50S ribosomal protein L22 -
ATN00_RS01475 () 274829..275104 - 276 WP_021244948.1 30S ribosomal protein S19 -
ATN00_RS01480 () 275110..275946 - 837 WP_062061180.1 50S ribosomal protein L2 -
ATN00_RS01485 () 275957..276271 - 315 WP_021244946.1 50S ribosomal protein L23 -
ATN00_RS01490 () 276264..276887 - 624 WP_062061183.1 50S ribosomal protein L4 -
ATN00_RS01495 () 276891..277649 - 759 WP_062068266.1 50S ribosomal protein L3 -
ATN00_RS01500 () 277906..278214 - 309 WP_004208724.1 30S ribosomal protein S10 -
ATN00_RS01505 () 278418..279608 - 1191 WP_062061185.1 Elongation factor Tu VF
ATN00_RS01510 () 279746..281818 - 2073 WP_062061188.1 elongation factor G -
ATN00_RS01515 () 282026..282496 - 471 WP_062061191.1 30S ribosomal protein S7 -
ATN00_RS01520 () 282515..282886 - 372 WP_026002556.1 30S ribosomal protein S12 -
ATN00_RS22700 () 283229..283543 + 315 Protein_300 Phytochrome-like protein cph2 VF
ATN00_RS01530 () 283758..284951 + 1194 WP_062061197.1 M23 family metallopeptidase -
ATN00_RS01535 () 284890..285318 + 429 WP_062061200.1 polymer-forming cytoskeletal protein -
ATN00_RS01540 () 285321..286112 - 792 Protein_303 ATP-binding protein -
ATN00_RS23285 () 286180..286986 - 807 WP_156415194.1 hypothetical protein -
ATN00_RS23565 () 286938..287165 - 228 WP_062061206.1 hypothetical protein -
ATN00_RS01555 () 287272..288222 + 951 WP_062061209.1 IS1595 family transposase ISDsh3 Transposase
ATN00_RS01560 () 288334..288987 + 654 WP_062061213.1 NYN domain-containing protein -
ATN00_RS01565 () 288998..289384 - 387 WP_156415195.1 hypothetical protein -
ATN00_RS01570 () 289485..290222 - 738 WP_082635055.1 YifB family Mg chelatase-like AAA ATPase -
ATN00_RS01575 () 290253..290927 - 675 WP_062061219.1 RlmE family RNA methyltransferase -
ATN00_RS01580 () 290924..292033 - 1110 WP_062061222.1 Ppx/GppA family phosphatase -
ATN00_RS01585 () 292128..292505 - 378 WP_197413723.1 Mth938-like domain-containing protein -
ATN00_RS01590 () 292523..293506 - 984 WP_062061225.1 protein translocase subunit SecF -
ATN00_RS01595 () 293525..295123 - 1599 WP_062061227.1 protein translocase subunit SecD -
ATN00_RS01600 () 295131..295466 - 336 WP_062061230.1 preprotein translocase subunit YajC -
ATN00_RS01610 () 295884..296423 + 540 WP_062061233.1 hypothetical protein -
ATN00_RS01615 () 296435..296707 + 273 WP_062061236.1 hypothetical protein -
ATN00_RS01620 () 296777..298141 + 1365 WP_013039168.1 transposase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance