MGE detailed information
MGE type: Conjugative plasmid MGE length: 62884 bp
Accession: NZ_CP012835 Location: 1..62884 Organism: Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 Replicon: plasmid pCFSAN001588_002
Accession: NZ_CP012835 Location: 1..62884 Organism: Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001588 Replicon: plasmid pCFSAN001588_002
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| - () | 1355..1417 | - | 63 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1355..1417 | - | 63 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1355..1417 | - | 63 | NuclAT_1 | - | Antitoxin Detail |
| - () | 1355..1417 | - | 63 | NuclAT_1 | - | Antitoxin Detail |
| CFSAN001588_RS22740 () | 1467..1619 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| CFSAN001588_RS22745 () | 1691..1942 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| CFSAN001588_RS25725 () | 2601..2738 | - | 138 | WP_047088497.1 | hypothetical protein | - |
| CFSAN001588_RS22755 () | 2783..4008 | - | 1226 | Protein_4 | transposase | - |
| CFSAN001588_RS24570 () | 4067..4471 | + | 405 | WP_001175009.1 | IS200/IS605 family transposase | - |
| CFSAN001588_RS25730 () | 4531..4686 | - | 156 | Protein_6 | pilus assembly protein PilO | - |
| CFSAN001588_RS22760 () | 4679..6361 | - | 1683 | WP_000748143.1 | PilN family type IVB pilus formation outer membrane protein | - |
| CFSAN001588_RS22765 () | 6375..6812 | - | 438 | WP_023233596.1 | type IV pilus biogenesis protein PilM | - |
| CFSAN001588_RS22770 () | 6812..7879 | - | 1068 | WP_031223821.1 | type IV pilus biogenesis lipoprotein PilL | - |
| CFSAN001588_RS22775 () | 8552..9004 | - | 453 | WP_023893440.1 | hypothetical protein | - |
| CFSAN001588_RS22780 () | 9047..9301 | - | 255 | WP_001136192.1 | PilI type IV pilus biogenesis protein | - |
| CFSAN001588_RS22785 () | 9569..10135 | - | 567 | WP_023233599.1 | hypothetical protein | - |
| CFSAN001588_RS22790 () | 10149..10832 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| CFSAN001588_RS22795 () | 11085..11618 | - | 534 | WP_023233600.1 | hypothetical protein | - |
| CFSAN001588_RS22800 () | 12060..12347 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| CFSAN001588_RS24585 () | 12265..12528 | - | 264 | WP_001324596.1 | ash family protein | - |
| CFSAN001588_RS22810 () | 13501..14532 | + | 1032 | WP_000907873.1 | replication initiation protein | - |
| CFSAN001588_RS22815 () | 15443..15712 | + | 270 | WP_000079946.1 | hypothetical protein | Antitoxin Detail |
| CFSAN001588_RS22820 () | 15709..15990 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CFSAN001588_RS22825 () | 16036..16884 | + | 849 | WP_023166900.1 | 3'-5' exonuclease | - |
| CFSAN001588_RS22830 () | 17000..17482 | + | 483 | WP_023166899.1 | hypothetical protein | - |
| CFSAN001588_RS22835 () | 17900..19426 | + | 1527 | WP_023893442.1 | Tar ligand binding domain-containing protein | - |
| CFSAN001588_RS22840 () | 19809..21179 | - | 1371 | WP_023166819.1 | efflux transporter outer membrane subunit | - |
| CFSAN001588_RS22845 () | 21183..23123 | - | 1941 | WP_023166818.1 | MacB family efflux pump subunit | - |
| CFSAN001588_RS22850 () | 23120..24307 | - | 1188 | WP_023233604.1 | efflux RND transporter periplasmic adaptor subunit | - |
| CFSAN001588_RS22855 () | 24418..25227 | - | 810 | WP_077910611.1 | omptin family outer membrane protease | - |
| CFSAN001588_RS22860 () | 25325..28456 | + | 3132 | WP_023892498.1 | hypothetical protein | - |
| CFSAN001588_RS22865 () | 28606..28779 | + | 174 | Protein_28 | hypothetical protein | - |
| CFSAN001588_RS22870 () | 28801..29136 | - | 336 | WP_023166814.1 | colicin immunity protein | - |
| CFSAN001588_RS22875 () | 29265..29612 | + | 348 | WP_000142452.1 | hypothetical protein | - |
| CFSAN001588_RS22880 () | 29632..30222 | - | 591 | WP_023166813.1 | hypothetical protein | - |
| CFSAN001588_RS22885 () | 30219..30479 | - | 261 | WP_023166812.1 | hypothetical protein | - |
| CFSAN001588_RS22890 () | 31047..31460 | + | 414 | WP_000465046.1 | hypothetical protein | - |
| CFSAN001588_RS22895 () | 31462..32241 | + | 780 | WP_023233605.1 | site-specific integrase | - |
| CFSAN001588_RS22900 () | 32421..33065 | + | 645 | WP_001144036.1 | ParA family protein | - |
| CFSAN001588_RS22905 () | 33152..33460 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| CFSAN001588_RS22910 () | 33874..34854 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| CFSAN001588_RS22915 () | 34847..35263 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| CFSAN001588_RS22920 () | 35265..36539 | - | 1275 | WP_006704467.1 | Y-family DNA polymerase | - |
| CFSAN001588_RS22925 () | 36539..36976 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CFSAN001588_RS22930 () | 36973..37221 | - | 249 | WP_000618111.1 | DinI-like family protein | - |
| CFSAN001588_RS22935 () | 37639..38541 | + | 903 | WP_023971765.1 | DUF1281 domain-containing protein | - |
| CFSAN001588_RS25490 () | 38538..38848 | + | 311 | Protein_43 | hypothetical protein | - |
| CFSAN001588_RS22945 () | 38925..39608 | + | 684 | WP_000086174.1 | DNA methylase | - |
| CFSAN001588_RS22950 () | 39609..39830 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| CFSAN001588_RS22955 () | 39844..40278 | + | 435 | WP_000274499.1 | DUF1380 family protein | - |
| CFSAN001588_RS25495 () | 40323..41093 | + | 771 | WP_001006206.1 | hypothetical protein | - |
| CFSAN001588_RS22970 () | 41511..41936 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| CFSAN001588_RS22975 () | 41983..42405 | + | 423 | WP_000271763.1 | DUF1380 family protein | - |
| CFSAN001588_RS25500 () | 42402..42593 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| CFSAN001588_RS25735 () | 42756..43100 | + | 345 | WP_023893444.1 | hypothetical protein | - |
| CFSAN001588_RS22995 () | 43344..43778 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| CFSAN001588_RS23000 () | 43871..44137 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| CFSAN001588_RS23005 () | 44202..45140 | + | 939 | WP_000038336.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| CFSAN001588_RS23010 () | 45140..45385 | + | 246 | WP_074447444.1 | hypothetical protein | - |
| CFSAN001588_RS23015 () | 45416..45667 | - | 252 | WP_000148285.1 | helix-turn-helix domain-containing protein | - |
| CFSAN001588_RS25740 () | 45701..45898 | - | 198 | Protein_57 | hypothetical protein | - |
| CFSAN001588_RS23020 () | 46247..47095 | + | 849 | WP_023233609.1 | DUF4942 domain-containing protein | - |
| CFSAN001588_RS23025 () | 47181..47516 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| CFSAN001588_RS23030 () | 47750..48082 | + | 333 | WP_023233610.1 | IncI1-type relaxosome accessory protein NikA | - |
| CFSAN001588_RS23035 () | 48093..50792 | + | 2700 | WP_023233611.1 | IncI1-type relaxase NikB | - |
| CFSAN001588_RS23040 () | 51211..51534 | + | 324 | WP_001419663.1 | DUF1778 domain-containing protein | - |
| CFSAN001588_RS23045 () | 51518..52072 | + | 555 | WP_023233612.1 | GNAT family N-acetyltransferase | - |
| CFSAN001588_RS25745 () | 52260..53084 | - | 825 | WP_171815626.1 | icmO-like type IV secretion system domain protein | - |
| CFSAN001588_RS25750 () | 53150..54550 | - | 1401 | WP_200909169.1 | hypothetical protein | - |
| CFSAN001588_RS23055 () | 54543..55613 | - | 1071 | WP_023233614.1 | IncI1-type conjugal transfer protein TrbB | - |
| CFSAN001588_RS23060 () | 55632..56840 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 57020..57082 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 57020..57082 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 57020..57082 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 57020..57082 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| CFSAN001588_RS23065 () | 57132..57284 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| CFSAN001588_RS23070 () | 57356..57607 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| CFSAN001588_RS25755 () | 58267..58404 | - | 138 | WP_047088497.1 | hypothetical protein | - |
| CFSAN001588_RS23075 () | 58489..59673 | - | 1185 | WP_077944741.1 | transposase | - |
| CFSAN001588_RS24645 () | 59732..60135 | + | 404 | Protein_72 | IS200/IS605 family transposase | - |
| CFSAN001588_RS25760 () | 60197..60349 | - | 153 | Protein_73 | pilus assembly protein PilO | - |
| CFSAN001588_RS25135 () | 60342..62016 | - | 1675 | Protein_74 | PilN family type IVB pilus formation outer membrane protein | - |
| CFSAN001588_RS23085 () | 62031..62467 | - | 437 | Protein_75 | type IV pilus biogenesis protein PilM | - |
| CFSAN001588_RS23090 () | 62467..62884 | - | 418 | Protein_76 | type IV pilus biogenesis lipoprotein PilL | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|