MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP011495 Location: 2664138..2685812 Organism: Escherichia coli strain NCM3722 isolate K-12 Replicon: chromosome
Accession: NZ_CP011495 Location: 2664138..2685812 Organism: Escherichia coli strain NCM3722 isolate K-12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AA953_RS13285 () | 2660188..2661171 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| AA953_RS13295 () | 2661649..2663022 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| AA953_RS13300 () | 2663151..2664086 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| AA953_RS24840 () | 2664138..2665373 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| AA953_RS13310 () | 2665375..2665590 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| AA953_RS13315 () | 2665669..2665878 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2665694..2665872 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2665694..2665872 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2665694..2665872 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 2665694..2665872 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| AA953_RS13320 () | 2665871..2666065 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| AA953_RS13325 () | 2666122..2666931 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| AA953_RS13330 () | 2666924..2669524 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| AA953_RS13335 () | 2669626..2669901 | - | 276 | WP_000632297.1 | protein RacC | - |
| AA953_RS13340 () | 2669976..2670146 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| AA953_RS13345 () | 2670146..2670367 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| AA953_RS13350 () | 2670809..2671297 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| AA953_RS23640 () | 2671294..2671449 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| AA953_RS13355 () | 2671903..2672379 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| AA953_RS13360 () | 2672503..2672799 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| AA953_RS13365 () | 2672822..2673244 | + | 423 | WP_000693797.1 | phage protein | - |
| AA953_RS13370 () | 2673257..2674114 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| AA953_RS13375 () | 2674121..2674867 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| AA953_RS13380 () | 2674890..2675342 | + | 453 | Protein_2520 | DUF1627 domain-containing protein | - |
| AA953_RS25940 () | 2675538..2675723 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| AA953_RS13390 () | 2675920..2677377 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| AA953_RS13395 () | 2677515..2677778 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| AA953_RS13400 () | 2677759..2678118 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| AA953_RS13410 () | 2678592..2679524 | + | 933 | Protein_2525 | phage tail length tape measure family protein | - |
| AA953_RS13415 () | 2679527..2679742 | + | 216 | Protein_2526 | Ail/Lom family outer membrane beta-barrel protein | - |
| AA953_RS13420 () | 2679884..2680864 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| AA953_RS25945 () | 2680934..2681122 | + | 189 | Protein_2528 | Ail/Lom family outer membrane beta-barrel protein | - |
| AA953_RS24865 () | 2681187..2684549 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| AA953_RS13445 () | 2684549..2685124 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| AA953_RS13450 () | 2685222..2685812 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| AA953_RS13455 () | 2686129..2686362 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| AA953_RS26490 () | 2686431..2686544 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| AA953_RS13460 () | 2687323..2687757 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| AA953_RS13465 () | 2687898..2689031 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |