MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP011324 Location: 1404487..1426161 Organism: Escherichia coli strain SQ2203 Replicon: chromosome
Accession: NZ_CP011324 Location: 1404487..1426161 Organism: Escherichia coli strain SQ2203 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS35_RS07000 () | 1400537..1401520 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| CS35_RS07010 () | 1401998..1403371 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| CS35_RS07015 () | 1403500..1404435 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| CS35_RS23535 () | 1404487..1405722 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CS35_RS07025 () | 1405724..1405939 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| CS35_RS07030 () | 1406018..1406227 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 1406043..1406221 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1406043..1406221 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1406043..1406221 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 1406043..1406221 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| CS35_RS07035 () | 1406220..1406414 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| CS35_RS07040 () | 1406471..1407280 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| CS35_RS07045 () | 1407273..1409873 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| CS35_RS07050 () | 1409975..1410250 | - | 276 | WP_000632297.1 | protein RacC | - |
| CS35_RS07055 () | 1410325..1410495 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| CS35_RS07060 () | 1410495..1410716 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| CS35_RS07065 () | 1411158..1411646 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| CS35_RS22830 () | 1411643..1411798 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| CS35_RS07070 () | 1412252..1412728 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| CS35_RS07075 () | 1412852..1413148 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| CS35_RS07080 () | 1413171..1413593 | + | 423 | WP_000693797.1 | phage protein | - |
| CS35_RS07085 () | 1413606..1414463 | + | 858 | WP_000899748.1 | DUF1376 domain-containing protein | - |
| CS35_RS07090 () | 1414470..1415216 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| CS35_RS07095 () | 1415239..1415691 | + | 453 | Protein_1357 | DUF1627 domain-containing protein | - |
| CS35_RS24890 () | 1415887..1416072 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| CS35_RS07105 () | 1416269..1417726 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| CS35_RS07110 () | 1417864..1418127 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| CS35_RS07115 () | 1418108..1418467 | + | 360 | WP_000091628.1 | hypothetical protein | - |
| CS35_RS07125 () | 1418941..1419873 | + | 933 | Protein_1362 | phage tail length tape measure family protein | - |
| CS35_RS07130 () | 1419876..1420091 | + | 216 | Protein_1363 | Ail/Lom family outer membrane beta-barrel protein | - |
| CS35_RS07135 () | 1420233..1421213 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| CS35_RS24895 () | 1421283..1421471 | + | 189 | Protein_1365 | Ail/Lom family outer membrane beta-barrel protein | - |
| CS35_RS23560 () | 1421536..1424898 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CS35_RS07160 () | 1424898..1425473 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| CS35_RS07165 () | 1425571..1426161 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CS35_RS07170 () | 1426478..1426711 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| CS35_RS25400 () | 1426780..1426893 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| CS35_RS07175 () | 1427672..1428106 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| CS35_RS07180 () | 1428247..1429380 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |