MGE detailed information
MGE type: Genomic_island MGE length: 41886 bp
Accession: NZ_CP010441 Location: 3492901..3534786 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Accession: NZ_CP010441 Location: 3492901..3534786 Organism: Escherichia coli K-12 strain K-12 MG1655 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SH03_RS17230 () | 3488537..3490198 | + | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| SH03_RS17235 () | 3490347..3490688 | + | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| SH03_RS17240 () | 3490750..3491040 | - | 291 | WP_001117838.1 | RnfH family protein | - |
| SH03_RS17245 () | 3491030..3491467 | - | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| SH03_RS17250 () | 3491638..3492120 | + | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| SH03_RS17255 () | 3492901..3494142 | + | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| SH03_RS17260 () | 3494386..3495342 | - | 957 | WP_000510827.1 | hypothetical protein | - |
| SH03_RS17265 () | 3495386..3495598 | + | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| SH03_RS17270 () | 3495727..3497136 | + | 1410 | WP_000481742.1 | DUF3987 domain-containing protein | - |
| SH03_RS17275 () | 3497289..3497915 | + | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| SH03_RS17280 () | 3498093..3500282 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| SH03_RS17285 () | 3500279..3501895 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| SH03_RS17290 () | 3502255..3502518 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| SH03_RS17295 () | 3502660..3503733 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| SH03_RS17300 () | 3503726..3504097 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| SH03_RS17305 () | 3504452..3505315 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| SH03_RS17310 () | 3505407..3506228 | + | 822 | WP_000197391.1 | DUF945 domain-containing protein | - |
| SH03_RS17315 () | 3506445..3507146 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| SH03_RS17320 () | 3507187..3507423 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| SH03_RS17325 () | 3507423..3507866 | + | 444 | WP_000824222.1 | hypothetical protein | - |
| SH03_RS17330 () | 3507890..3508357 | + | 468 | WP_000702495.1 | hypothetical protein | - |
| SH03_RS17335 () | 3508582..3508896 | - | 315 | WP_000065803.1 | arsenate reductase | - |
| SH03_RS17340 () | 3508909..3509918 | - | 1010 | Protein_3279 | arsenic transporter | - |
| SH03_RS17345 () | 3510060..3511763 | + | 1704 | WP_000896263.1 | hypothetical protein | - |
| SH03_RS24380 () | 3512335..3512558 | + | 224 | Protein_3281 | DUF905 family protein | - |
| SH03_RS17350 () | 3512661..3513119 | + | 459 | WP_000211841.1 | antirestriction protein | - |
| SH03_RS17355 () | 3513128..3513610 | + | 483 | WP_001407480.1 | RadC family protein | - |
| SH03_RS24385 () | 3513619..3513819 | + | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| SH03_RS17360 () | 3513857..3514174 | + | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| SH03_RS17365 () | 3514195..3514524 | + | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| SH03_RS23000 () | 3514888..3519468 | - | 4581 | WP_010723187.1 | putative autotransporter | VF |
| SH03_RS24390 () | 3519533..3519652 | - | 120 | WP_001120794.1 | hypothetical protein | - |
| SH03_RS24400 () | 3519807..3520025 | - | 219 | WP_071524906.1 | recombinase family protein | - |
| SH03_RS25665 () | 3520380..3521753 | - | 1374 | Protein_3290 | DUF5507 domain-containing protein | - |
| SH03_RS25910 () | 3523139..3525391 | + | 2253 | Protein_3291 | hypothetical protein | - |
| SH03_RS17420 () | 3525727..3526704 | + | 978 | WP_000993126.1 | carbon starvation induced protein CsiD | - |
| SH03_RS17425 () | 3526724..3527992 | + | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| SH03_RS17430 () | 3528015..3529463 | + | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| SH03_RS17435 () | 3529477..3530757 | + | 1281 | WP_001087611.1 | 4-aminobutyrate aminotransferase GabT | VF |
| SH03_RS17440 () | 3530995..3532395 | + | 1401 | WP_001295173.1 | GABA permease | - |
| SH03_RS17445 () | 3532416..3533078 | + | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| SH03_RS17450 () | 3533079..3533528 | - | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| SH03_RS17455 () | 3533612..3533770 | - | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| SH03_RS17460 () | 3533953..3534252 | + | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| SH03_RS17465 () | 3534262..3534786 | + | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| SH03_RS17470 () | 3534833..3535237 | - | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| SH03_RS17475 () | 3535906..3536355 | + | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| SH03_RS17480 () | 3536392..3536736 | - | 345 | WP_000281320.1 | DUF2002 family protein | - |
| SH03_RS17485 () | 3536888..3537217 | + | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| SH03_RS17490 () | 3537465..3537710 | + | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| SH03_RS17495 () | 3537707..3538117 | + | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0.007 |