MGE detailed information
MGE type: Conjugative plasmid MGE length: 106274 bp
Accession: NZ_CP010174 Location: 1..106274 Organism: Escherichia coli strain H8 Replicon: plasmid B
Accession: NZ_CP010174 Location: 1..106274 Organism: Escherichia coli strain H8 Replicon: plasmid B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG50_RS26470 () | 68..973 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| RG50_RS26475 () | 970..2208 | + | 1239 | WP_000004159.1 | MFS transporter | - |
| RG50_RS26480 () | 2208..2792 | + | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| RG50_RS26490 () | 3285..4049 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| RG50_RS28900 () | 4167..4232 | - | 66 | Protein_4 | EAL domain-containing protein | - |
| RG50_RS26500 () | 4276..4581 | - | 306 | WP_000130000.1 | hypothetical protein | Relaxase |
| RG50_RS26505 () | 4592..5797 | - | 1206 | WP_000184001.1 | chromate efflux transporter | - |
| RG50_RS26510 () | 5953..6156 | - | 204 | WP_000376616.1 | hypothetical protein | - |
| RG50_RS26520 () | 6284..7123 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| RG50_RS26525 () | 7117..7464 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| RG50_RS26530 () | 7670..8458 | - | 789 | WP_000503573.1 | Streptomycin 3''-adenylyltransferase | ARG |
| RG50_RS26535 () | 8589..9062 | - | 474 | WP_001389366.1 | Dihydrofolate reductase type 1 | ARG |
| RG50_RS26540 () | 9220..10233 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| RG50_RS28905 () | 10436..10786 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| RG50_RS26555 () | 10962..11522 | + | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| RG50_RS26560 () | 11526..14492 | + | 2967 | WP_001138014.1 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| RG50_RS26565 () | 14525..14758 | - | 234 | Protein_16 | transposase | - |
| RG50_RS26570 () | 15339..15725 | + | 387 | WP_001039464.1 | hypothetical protein | - |
| RG50_RS26575 () | 15865..16833 | - | 969 | WP_030005799.1 | IS5 family transposase IS903B | Transposase |
| RG50_RS26585 () | 17903..18211 | - | 309 | Protein_19 | replication initiation protein | - |
| RG50_RS26590 () | 18221..18918 | - | 698 | Protein_20 | IS1 family transposase IS1X3 | Transposase |
| RG50_RS26595 () | 19070..20557 | - | 1488 | Protein_21 | group II intron reverse transcriptase/maturase | - |
| RG50_RS26605 () | 20963..21394 | + | 432 | WP_000776034.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| RG50_RS26610 () | 21394..22665 | + | 1272 | WP_001754953.1 | Y-family DNA polymerase | - |
| RG50_RS26615 () | 22747..23721 | - | 975 | WP_000064119.1 | ParB/RepB/Spo0J family partition protein | - |
| RG50_RS26620 () | 23721..24926 | - | 1206 | WP_000368714.1 | AAA family ATPase | - |
| RG50_RS26625 () | 25341..25610 | + | 270 | WP_000339857.1 | hypothetical protein | - |
| RG50_RS26630 () | 25787..26653 | - | 867 | WP_004118283.1 | replication initiation protein | - |
| RG50_RS28925 () | 27183..27287 | + | 105 | WP_032409716.1 | hypothetical protein | - |
| RG50_RS26635 () | 27416..27673 | + | 258 | WP_000764642.1 | hypothetical protein | - |
| RG50_RS26640 () | 27731..28507 | - | 777 | WP_000015958.1 | site-specific integrase | - |
| RG50_RS26645 () | 28504..29247 | - | 744 | WP_000129823.1 | hypothetical protein | - |
| RG50_RS26650 () | 29298..29648 | - | 351 | WP_000493378.1 | hypothetical protein | - |
| RG50_RS26660 () | 30222..30452 | + | 231 | WP_001261276.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| RG50_RS26665 () | 30449..30865 | + | 417 | WP_000754566.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| RG50_RS27970 () | 31069..31925 | + | 857 | Protein_35 | IS3 family transposase ISEc15 | Transposase |
| RG50_RS26685 () | 32207..33283 | + | 1077 | WP_000227969.1 | IS110 family transposase ISEc21 | Transposase |
| RG50_RS26695 () | 33566..34426 | + | 861 | WP_000557452.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| RG50_RS26700 () | 34439..34981 | + | 543 | WP_002063889.1 | AAA family ATPase | - |
| RG50_RS26710 () | 35073..36121 | + | 1049 | Protein_39 | IS3 family transposase ISKpn11 | Transposase |
| RG50_RS26715 () | 36175..36879 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| RG50_RS29100 () | 37114..37455 | - | 342 | WP_023909256.1 | 60 kDa chaperonin 2 | VF |
| RG50_RS26725 () | 37416..37865 | - | 450 | WP_013362817.1 | hypothetical protein | - |
| RG50_RS29105 () | 38380..38550 | - | 171 | WP_170852050.1 | rRNA adenine methyltransferase | - |
| RG50_RS26730 () | 38495..39232 | - | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| RG50_RS26735 () | 39358..39453 | - | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| RG50_RS26740 () | 39588..40292 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| RG50_RS26745 () | 40348..41085 | + | 738 | Protein_47 | Beta-lactamase TEM | ARG |
| RG50_RS26750 () | 41344..41820 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| RG50_RS26755 () | 41867..42742 | - | 876 | WP_000239590.1 | Beta-lactamase CTX-M-1 | ARG |
| RG50_RS26770 () | 43163..43867 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| RG50_RS29110 () | 43933..43998 | + | 66 | Protein_51 | IS1 family transposase | - |
| RG50_RS27975 () | 45447..45681 | + | 235 | Protein_52 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| RG50_RS26795 () | 45809..46090 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| RG50_RS26800 () | 46213..46563 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| RG50_RS26805 () | 46566..47528 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| RG50_RS26810 () | 47675..47968 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| RG50_RS26820 () | 48045..48728 | + | 684 | WP_000085883.1 | DNA methylase | - |
| RG50_RS26825 () | 48729..48950 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| RG50_RS26830 () | 48964..49398 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| RG50_RS29115 () | 49449..50225 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| RG50_RS26845 () | 50766..51068 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| RG50_RS26850 () | 51115..51537 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| RG50_RS26855 () | 51534..51725 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| RG50_RS26870 () | 52763..52993 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| RG50_RS26875 () | 53045..54406 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| RG50_RS26880 () | 54453..55016 | + | 564 | WP_001298559.1 | class I SAM-dependent methyltransferase | - |
| RG50_RS29120 () | 55102..55557 | - | 456 | WP_001424978.1 | hypothetical protein | - |
| RG50_RS26900 () | 55858..56385 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| RG50_RS26905 () | 56443..56676 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| RG50_RS26910 () | 56737..58760 | + | 2024 | Protein_70 | ParB/RepB/Spo0J family partition protein | - |
| RG50_RS26915 () | 58829..59263 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| RG50_RS26920 () | 59260..59979 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 59991..60215 | + | 225 | NuclAT_0 | - | - |
| - () | 59991..60215 | + | 225 | NuclAT_0 | - | - |
| - () | 59991..60215 | + | 225 | NuclAT_0 | - | - |
| - () | 59991..60215 | + | 225 | NuclAT_0 | - | - |
| RG50_RS28930 () | 60000..60179 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - () | 60148..60213 | + | 66 | - | - | Antitoxin Detail |
| RG50_RS26930 () | 60259..60417 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| RG50_RS29125 () | 60655..61032 | - | 378 | Protein_75 | hypothetical protein | - |
| RG50_RS26950 () | 61332..61628 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| RG50_RS26955 () | 61739..62560 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| RG50_RS26960 () | 62857..63459 | - | 603 | WP_000243713.1 | hypothetical protein | VF |
| RG50_RS26965 () | 63782..64165 | + | 384 | WP_001354030.1 | relaxosome protein TraM | - |
| RG50_RS26970 () | 64359..65030 | + | 672 | WP_000283561.1 | conjugal transfer transcriptional regulator TraJ | - |
| RG50_RS26975 () | 65167..65394 | + | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| RG50_RS26980 () | 65427..65786 | + | 360 | WP_001098992.1 | type IV conjugative transfer system pilin TraA | - |
| RG50_RS26985 () | 65801..66112 | + | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| RG50_RS26990 () | 66134..66700 | + | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| RG50_RS26995 () | 66687..67415 | + | 729 | WP_001230772.1 | type-F conjugative transfer system secretin TraK | - |
| RG50_RS27000 () | 67415..68866 | + | 1452 | WP_000146675.1 | conjugal transfer protein TraB | - |
| RG50_RS27005 () | 68835..69422 | + | 588 | WP_001444176.1 | conjugal transfer protein TraP | - |
| RG50_RS27010 () | 69361..69729 | + | 369 | WP_001315561.1 | conjugal transfer protein TrbD | - |
| RG50_RS27015 () | 69726..70241 | + | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| RG50_RS27020 () | 70376..70597 | + | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| RG50_RS27025 () | 70590..71066 | + | 477 | WP_000549587.1 | hypothetical protein | - |
| RG50_RS27030 () | 71146..71364 | + | 219 | WP_000556745.1 | hypothetical protein | - |
| RG50_RS28935 () | 71392..71739 | + | 348 | WP_000836682.1 | hypothetical protein | - |
| RG50_RS27040 () | 71865..74495 | + | 2631 | WP_000069777.1 | type IV secretion system protein TraC | - |
| RG50_RS27045 () | 74492..74878 | + | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| RG50_RS27050 () | 74875..75507 | + | 633 | WP_001203728.1 | type-F conjugative transfer system protein TraW | - |
| RG50_RS27055 () | 75504..76496 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| RG50_RS27060 () | 76526..76831 | + | 306 | WP_000224416.1 | hypothetical protein | - |
| RG50_RS27065 () | 76840..77478 | + | 639 | WP_001080256.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| RG50_RS27070 () | 77475..79325 | + | 1851 | WP_000821856.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| RG50_RS27075 () | 79352..79609 | + | 258 | WP_000864353.1 | conjugal transfer protein TrbE | - |
| RG50_RS27080 () | 79602..80345 | + | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| RG50_RS27085 () | 80359..80703 | + | 345 | WP_000556796.1 | conjugal transfer protein TrbA | - |
| RG50_RS27090 () | 80822..81106 | + | 285 | WP_000624194.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| RG50_RS27095 () | 81093..81638 | + | 546 | WP_000059831.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| RG50_RS27100 () | 81568..81927 | + | 360 | WP_073529434.1 | P-type conjugative transfer protein TrbJ | - |
| RG50_RS27115 () | 82669..83061 | + | 393 | WP_073529438.1 | F-type conjugal transfer protein TrbF | - |
| RG50_RS27120 () | 83048..84421 | + | 1374 | WP_000944331.1 | conjugal transfer protein TraH | - |
| RG50_RS27125 () | 84418..87240 | + | 2823 | WP_001007039.1 | conjugal transfer mating pair stabilization protein TraG | - |
| RG50_RS27130 () | 87256..87741 | + | 486 | WP_000605870.1 | hypothetical protein | - |
| RG50_RS27135 () | 87790..88521 | + | 732 | WP_000782451.1 | complement resistance protein TraT | - |
| RG50_RS27140 () | 88724..89065 | + | 342 | WP_073529441.1 | hypothetical protein | - |
| RG50_RS27150 () | 89102..89806 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| RG50_RS27160 () | 89876..90289 | + | 414 | WP_072183879.1 | hypothetical protein | - |
| RG50_RS27165 () | 90340..92601 | + | 2262 | WP_046072940.1 | type IV conjugative transfer system coupling protein TraD | - |
| RG50_RS27170 () | 92601..97871 | + | 5271 | WP_015059148.1 | Multifunctional conjugation protein TraI | Relaxase |
| RG50_RS27175 () | 97891..98637 | + | 747 | WP_000205725.1 | conjugal transfer pilus acetylase TraX | - |
| RG50_RS27180 () | 98696..99556 | + | 861 | WP_000704523.1 | putative protein YcjY | VF |
| RG50_RS27185 () | 99659..100219 | + | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| RG50_RS27190 () | 100348..100560 | + | 213 | WP_001309245.1 | ANR family transcriptional regulator | - |
| RG50_RS27195 () | 100805..101266 | + | 462 | WP_001233838.1 | thermonuclease family protein | - |
| RG50_RS27200 () | 101312..101521 | + | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| RG50_RS27205 () | 101559..102149 | + | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| RG50_RS27210 () | 102389..102643 | + | 255 | WP_000083830.1 | replication regulatory protein RepA | - |
| RG50_RS27220 () | 102881..102955 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| RG50_RS27225 () | 102948..103805 | + | 858 | WP_000130646.1 | incFII family plasmid replication initiator RepA | - |
| RG50_RS29130 () | 104506..104646 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| RG50_RS27235 () | 104744..105397 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| RG50_RS28940 () | 105490..105747 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| RG50_RS27245 () | 105680..106081 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|