MGE detailed information
MGE type: Mobilizable plasmid MGE length: 88754 bp
Accession: NZ_CP010147 Location: 1..88754 Organism: Escherichia coli strain D5 Replicon: plasmid B
Accession: NZ_CP010147 Location: 1..88754 Organism: Escherichia coli strain D5 Replicon: plasmid B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG38_RS25915 () | 1..729 | + | 729 | Protein_0 | IS3 family transposase IS2 | Transposase |
| RG38_RS25930 () | 1971..3164 | + | 1194 | WP_000450494.1 | GTP-binding protein | - |
| RG38_RS27695 () | 3342..3491 | + | 150 | Protein_2 | IS3 family transposase | - |
| RG38_RS25945 () | 3801..5190 | + | 1390 | Protein_3 | ISNCY family transposase ISKpn21 | Transposase |
| RG38_RS25955 () | 5425..6366 | + | 942 | WP_000974762.1 | hypothetical protein | - |
| RG38_RS25960 () | 6495..6689 | - | 195 | Protein_5 | IS200/IS605-like element IS200C family transposase | - |
| RG38_RS25970 () | 7163..8533 | - | 1371 | WP_001312828.1 | efflux transporter outer membrane subunit | - |
| RG38_RS25975 () | 8537..10477 | - | 1941 | WP_000733250.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| RG38_RS25980 () | 10474..11661 | - | 1188 | WP_000928804.1 | efflux RND transporter periplasmic adaptor subunit | - |
| RG38_RS25985 () | 12642..12967 | + | 326 | Protein_9 | DDE-type integrase/transposase/recombinase | - |
| RG38_RS27180 () | 13115..14314 | - | 1200 | Protein_10 | IS3 family transposase IS629 | Transposase |
| RG38_RS27185 () | 14498..14656 | + | 159 | WP_001324039.1 | integrase core domain-containing protein | - |
| RG38_RS26020 () | 15929..16882 | + | 954 | WP_000280980.1 | Protease 7 | VF |
| RG38_RS26030 () | 17315..18424 | + | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| RG38_RS26035 () | 18493..19395 | + | 903 | WP_001312822.1 | hypothetical protein | VF |
| RG38_RS26040 () | 19769..19957 | + | 189 | WP_001324033.1 | hypothetical protein | - |
| RG38_RS26045 () | 20078..20818 | + | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| RG38_RS26050 () | 21103..22080 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| RG38_RS27190 () | 22826..23149 | + | 324 | Protein_18 | IS21 family transposase IS21 | Transposase |
| RG38_RS27700 () | 23151..23255 | + | 105 | Protein_19 | AAA family ATPase | - |
| RG38_RS26075 () | 23316..23829 | + | 514 | Protein_20 | DUF4113 domain-containing protein | - |
| RG38_RS26080 () | 24009..24706 | - | 698 | Protein_21 | IS1-like element IS1A family transposase | - |
| RG38_RS26105 () | 25062..25976 | + | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| RG38_RS26110 () | 25976..26803 | + | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| RG38_RS26115 () | 26800..27657 | + | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| RG38_RS26120 () | 27654..28511 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| RG38_RS27200 () | 28745..29002 | - | 258 | Protein_26 | Tn3 family transposase | - |
| RG38_RS26125 () | 29000..29413 | + | 414 | Protein_27 | phosphopyruvate hydratase | - |
| RG38_RS26135 () | 29754..30134 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| RG38_RS26140 () | 30514..31707 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| RG38_RS26145 () | 31843..33567 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| RG38_RS26150 () | 33568..34515 | + | 948 | WP_000011910.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| RG38_RS26155 () | 34515..36257 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| RG38_RS26160 () | 36254..37531 | + | 1278 | WP_000750130.1 | L-lysine N6-monooxygenase | VF |
| RG38_RS26165 () | 37613..39814 | + | 2202 | WP_000973520.1 | Ferric aerobactin receptor | VF |
| RG38_RS26190 () | 40299..40996 | + | 698 | Protein_35 | IS1-like element IS1A family transposase | - |
| RG38_RS26195 () | 41296..42462 | + | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| RG38_RS26200 () | 42462..43433 | + | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| RG38_RS26210 () | 44400..44606 | + | 207 | WP_000275856.1 | hypothetical protein | - |
| RG38_RS26215 () | 44632..45171 | + | 540 | WP_000290840.1 | single-stranded DNA-binding protein | - |
| RG38_RS26220 () | 45239..45472 | + | 234 | WP_000005987.1 | DUF905 family protein | - |
| RG38_RS26225 () | 45500..45697 | + | 198 | Protein_41 | hypothetical protein | - |
| RG38_RS26230 () | 45752..46186 | + | 435 | WP_000845936.1 | conjugation system SOS inhibitor PsiB | - |
| RG38_RS26235 () | 46183..46902 | + | 720 | WP_001276238.1 | plasmid SOS inhibition protein A | - |
| RG38_RS27870 () | 46914..47102 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 46914..47138 | + | 225 | NuclAT_0 | - | - |
| - () | 46914..47138 | + | 225 | NuclAT_0 | - | - |
| - () | 46914..47138 | + | 225 | NuclAT_0 | - | - |
| - () | 46914..47138 | + | 225 | NuclAT_0 | - | - |
| RG38_RS26245 () | 47182..47340 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| RG38_RS26265 () | 48261..48548 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| RG38_RS26270 () | 48666..49487 | + | 822 | WP_001234426.1 | DUF945 domain-containing protein | - |
| RG38_RS26275 () | 49784..50386 | - | 603 | WP_000243712.1 | hypothetical protein | VF |
| RG38_RS26285 () | 50707..51090 | + | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| RG38_RS26290 () | 51277..51966 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| RG38_RS26295 () | 52065..52460 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| RG38_RS26300 () | 52493..52858 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| RG38_RS26305 () | 52873..53184 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| RG38_RS26310 () | 53206..53382 | + | 177 | Protein_54 | type IV conjugative transfer system protein TraE | - |
| RG38_RS26315 () | 53398..54095 | - | 698 | Protein_55 | IS1-like element IS1A family transposase | - |
| RG38_RS26335 () | 54344..54745 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| RG38_RS27720 () | 54678..54935 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| RG38_RS26345 () | 55028..55681 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| RG38_RS26355 () | 56620..57477 | - | 858 | WP_073511591.1 | incFII family plasmid replication initiator RepA | - |
| RG38_RS26360 () | 57470..57952 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| RG38_RS26365 () | 57945..58019 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| RG38_RS26375 () | 58251..58508 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| RG38_RS26380 () | 58792..58998 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 58985..59046 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 58985..59046 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 58985..59046 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 58985..59046 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| RG38_RS27875 () | 59302..59376 | - | 75 | Protein_64 | endonuclease | - |
| RG38_RS26390 () | 59622..59834 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| RG38_RS26395 () | 59970..60530 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| RG38_RS26400 () | 60633..61493 | - | 861 | WP_000704514.1 | putative protein YcjY | VF |
| RG38_RS26405 () | 61552..62298 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| RG38_RS26410 () | 62318..63274 | - | 957 | Protein_69 | Multifunctional conjugation protein TraI | Relaxase |
| RG38_RS26415 () | 63326..64030 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| RG38_RS26420 () | 64067..64231 | - | 165 | WP_077897817.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| RG38_RS26425 () | 64228..64497 | - | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| RG38_RS26430 () | 64499..65276 | - | 778 | Protein_73 | Gfo/Idh/MocA family oxidoreductase | - |
| RG38_RS27725 () | 65437..65673 | + | 237 | WP_001323890.1 | colicin V immunity protein | - |
| RG38_RS26440 () | 65651..65962 | + | 312 | WP_001259758.1 | colicin V | - |
| RG38_RS26445 () | 66132..68246 | - | 2115 | WP_001183604.1 | peptidase domain-containing ABC transporter | - |
| RG38_RS26450 () | 68221..69495 | - | 1275 | WP_000489609.1 | HlyD family secretion protein | - |
| RG38_RS26460 () | 70177..70374 | + | 198 | WP_001324224.1 | toxin-antitoxin system protein | Antitoxin Detail |
| RG38_RS26465 () | 70371..70553 | + | 183 | WP_000969988.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG38_RS26470 () | 70652..70960 | + | 309 | WP_000377483.1 | hypothetical protein | - |
| RG38_RS26480 () | 71520..72554 | + | 1035 | WP_001190234.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| RG38_RS26500 () | 73420..75597 | + | 2178 | WP_001222186.1 | Ferric enterobactin receptor | VF |
| RG38_RS26505 () | 75642..76598 | - | 957 | WP_000271274.1 | Ferri-bacillibactin esterase BesA | VF |
| RG38_RS26510 () | 76683..77912 | - | 1230 | WP_000933678.1 | Enterochelin esterase | VF |
| RG38_RS26515 () | 78016..81675 | - | 3660 | WP_001389363.1 | Multidrug efflux ATP-binding/permease protein | VF |
| RG38_RS26520 () | 81815..82930 | - | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| RG38_RS27240 () | 84166..85265 | - | 1100 | Protein_87 | IS481 family transposase ISKpn28 | Transposase |
| RG38_RS26545 () | 85819..86018 | + | 200 | Protein_88 | lysis protein | - |
| RG38_RS26550 () | 86076..86369 | - | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| RG38_RS26565 () | 86949..87514 | + | 566 | Protein_90 | IS3 family transposase IS2 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|