MGE detailed information
MGE type: Mobilizable plasmid MGE length: 55203 bp
Accession: NZ_CP010136 Location: 1..55203 Organism: Escherichia coli strain D1 Replicon: plasmid B
Accession: NZ_CP010136 Location: 1..55203 Organism: Escherichia coli strain D1 Replicon: plasmid B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG34_RS27355 () | 474..704 | + | 231 | WP_073514781.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| RG34_RS27360 () | 701..1117 | + | 417 | WP_077897775.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| RG34_RS27365 () | 1213..2136 | - | 924 | Protein_2 | peptidase | - |
| RG34_RS27370 () | 2254..3324 | + | 1071 | WP_073514782.1 | IS481 family transposase ISKpn28 | Transposase |
| RG34_RS27375 () | 3660..4280 | + | 621 | WP_073514783.1 | hypothetical protein | VF |
| RG34_RS27380 () | 4455..4988 | - | 534 | Protein_5 | IS3 family transposase | - |
| RG34_RS27415 () | 7419..7793 | - | 375 | Protein_8 | IS66 family transposase ISSfl3 | Transposase |
| RG34_RS28420 () | 7876..8100 | - | 225 | Protein_9 | IS66 family insertion sequence element accessory protein TnpB | - |
| RG34_RS27430 () | 8241..9048 | - | 808 | Protein_10 | phage integrase family protein | - |
| RG34_RS27435 () | 9049..9354 | - | 306 | WP_073514788.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| RG34_RS27440 () | 9356..9574 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| RG34_RS27450 () | 10169..10438 | + | 270 | WP_000343793.1 | hypothetical protein | - |
| RG34_RS27455 () | 10426..11022 | + | 597 | WP_059219358.1 | hypothetical protein | - |
| RG34_RS27470 () | 11799..12776 | + | 978 | WP_000361615.1 | RepB family plasmid replication initiator protein | - |
| RG34_RS27475 () | 13061..13801 | - | 741 | WP_073514789.1 | tyrosine-type recombinase/integrase | - |
| RG34_RS27480 () | 13922..14077 | - | 156 | WP_097760941.1 | transcriptional regulator | - |
| RG34_RS27485 () | 14707..15054 | - | 348 | Protein_18 | hypothetical protein | - |
| RG34_RS27490 () | 15211..15429 | + | 219 | Protein_19 | IS200/IS605 family transposase | - |
| RG34_RS27505 () | 16914..17216 | + | 303 | WP_073514791.1 | Protein kinase OspG | VF |
| RG34_RS27510 () | 17355..17522 | - | 168 | Protein_21 | transposase | - |
| RG34_RS28430 () | 17575..18778 | + | 1204 | Protein_22 | IS256 family transposase ISSod4 | Transposase |
| RG34_RS27525 () | 18815..19007 | + | 193 | Protein_23 | hypothetical protein | - |
| RG34_RS27530 () | 19090..19938 | - | 849 | WP_073514793.1 | hypothetical protein | VF |
| RG34_RS29000 () | 20321..20428 | - | 108 | Protein_25 | type IV conjugative transfer system protein TraE | - |
| RG34_RS27545 () | 20450..20599 | - | 150 | Protein_26 | type IV conjugative transfer system protein TraL | - |
| RG34_RS27550 () | 22406..22827 | - | 422 | Protein_27 | relaxosome protein TraM | - |
| RG34_RS27560 () | 23144..23746 | + | 603 | WP_077897778.1 | hypothetical protein | VF |
| RG34_RS27565 () | 24044..24865 | - | 822 | WP_001234469.1 | DUF945 domain-containing protein | - |
| RG34_RS27570 () | 24984..25181 | - | 198 | WP_064766093.1 | hypothetical protein | - |
| RG34_RS27575 () | 25295..25501 | - | 207 | WP_073514796.1 | single-stranded DNA-binding protein | - |
| RG34_RS29170 () | 25752..26080 | + | 329 | Protein_32 | pilus assembly protein | - |
| RG34_RS27595 () | 26059..26250 | - | 192 | WP_001024835.1 | hypothetical protein | - |
| RG34_RS27600 () | 26247..26669 | - | 423 | WP_000271758.1 | DUF1380 family protein | - |
| RG34_RS27605 () | 26716..26994 | - | 279 | WP_123059140.1 | antirestriction protein | - |
| RG34_RS29175 () | 27373..28149 | - | 777 | WP_073514799.1 | hypothetical protein | - |
| RG34_RS27620 () | 28195..28629 | - | 435 | WP_073514800.1 | DUF1380 family protein | - |
| RG34_RS27625 () | 28641..28862 | - | 222 | WP_073514801.1 | hypothetical protein | - |
| RG34_RS27630 () | 28863..29546 | - | 684 | WP_073514802.1 | DNA methylase | - |
| RG34_RS27640 () | 29623..29937 | - | 315 | WP_073514814.1 | hypothetical protein | - |
| RG34_RS27645 () | 29881..30261 | + | 381 | Protein_41 | IS66 family transposase ISSfl3 | Transposase |
| RG34_RS27650 () | 30378..30716 | - | 339 | WP_106426746.1 | IS66 family transposase ISEc23 | Transposase |
| RG34_RS27655 () | 30713..31138 | - | 426 | WP_000422702.1 | IS66 family transposase ISEc23 | Transposase |
| RG34_RS27660 () | 31189..31609 | - | 421 | Protein_44 | IS3 family transposase ISKpn37 | Transposase |
| RG34_RS27665 () | 31611..31898 | - | 288 | WP_001270421.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG34_RS27670 () | 31895..32146 | - | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RG34_RS27675 () | 32320..32532 | - | 213 | WP_000402944.1 | hypothetical protein | - |
| RG34_RS27685 () | 32906..34111 | + | 1206 | WP_000817642.1 | Plasmid partition protein A | VF |
| RG34_RS27690 () | 34108..35070 | + | 963 | WP_000756329.1 | ParB/RepB/Spo0J family partition protein | - |
| RG34_RS27695 () | 35210..36371 | - | 1162 | Protein_50 | DUF4113 domain-containing protein | - |
| RG34_RS29180 () | 36252..36668 | + | 417 | Protein_51 | DUF1281 domain-containing protein | - |
| RG34_RS27705 () | 36672..36977 | + | 306 | WP_032163448.1 | hypothetical protein | - |
| RG34_RS27715 () | 37054..37737 | + | 684 | WP_073514802.1 | DNA methylase | - |
| RG34_RS27720 () | 37738..37959 | + | 222 | WP_073514801.1 | hypothetical protein | - |
| RG34_RS27725 () | 37971..38405 | + | 435 | WP_073514800.1 | DUF1380 family protein | - |
| RG34_RS29185 () | 38451..39227 | + | 777 | WP_073514799.1 | hypothetical protein | - |
| RG34_RS27740 () | 39606..39884 | + | 279 | WP_123059140.1 | antirestriction protein | - |
| RG34_RS27745 () | 39931..40353 | + | 423 | WP_000271758.1 | DUF1380 family protein | - |
| RG34_RS27750 () | 40350..40541 | + | 192 | WP_001024835.1 | hypothetical protein | - |
| RG34_RS29190 () | 40520..40848 | - | 329 | Protein_60 | pilus assembly protein | - |
| RG34_RS27770 () | 41099..41287 | + | 189 | Protein_61 | single-stranded DNA-binding protein | - |
| RG34_RS27775 () | 41536..42183 | - | 648 | WP_187223061.1 | hypothetical protein | VF |
| RG34_RS27780 () | 42459..42841 | + | 383 | Protein_63 | relaxosome protein TraM | - |
| RG34_RS27785 () | 43028..43717 | + | 690 | WP_073514805.1 | conjugal transfer transcriptional regulator TraJ | - |
| RG34_RS27790 () | 43805..44200 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| RG34_RS27795 () | 44233..44592 | + | 360 | WP_000994785.1 | type IV conjugative transfer system pilin TraA | - |
| RG34_RS27800 () | 44607..44918 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| RG34_RS27805 () | 44940..45113 | + | 174 | Protein_68 | type IV conjugative transfer system protein TraE | - |
| RG34_RS27815 () | 45113..45766 | + | 654 | Protein_69 | conjugative transfer relaxase/helicase TraI | - |
| RG34_RS27820 () | 45762..46070 | + | 309 | Protein_70 | type-F conjugative transfer system pilin acetylase TraX | - |
| RG34_RS27825 () | 46129..46989 | + | 861 | WP_053264208.1 | putative protein YcjY | VF |
| RG34_RS27830 () | 47092..47652 | + | 561 | WP_000139321.1 | fertility inhibition protein FinO | - |
| RG34_RS27835 () | 47821..48975 | - | 1155 | Protein_73 | IS66 family transposase ISCro1 | Transposase |
| RG34_RS27840 () | 48995..49450 | - | 456 | Protein_74 | IS66 family transposase ISCro1 | Transposase |
| RG34_RS27850 () | 49530..50207 | + | 678 | WP_073514807.1 | IS66 family transposase ISSfl3 | Transposase |
| RG34_RS27855 () | 50204..50551 | + | 348 | WP_073514808.1 | IS66 family transposase ISSfl3 | Transposase |
| RG34_RS27860 () | 50571..50960 | + | 390 | Protein_77 | IS66 family transposase ISSfl3 | Transposase |
| RG34_RS27875 () | 51016..52229 | + | 1214 | Protein_78 | IS3 family transposase IS629 | Transposase |
| RG34_RS27880 () | 52276..52587 | - | 312 | Protein_79 | IS66 family transposase ISEc23 | Transposase |
| RG34_RS27885 () | 52570..52719 | + | 150 | WP_071847056.1 | IS66 family transposase ISEc23 | Transposase |
| RG34_RS27890 () | 52883..53470 | + | 588 | WP_024182013.1 | serine acetyltransferase | - |
| RG34_RS27895 () | 53717..54025 | - | 309 | WP_077764292.1 | hypothetical protein | - |
| RG34_RS27900 () | 54157..55188 | + | 1032 | WP_073514810.1 | IS630 family transposase IS630 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|