MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 86032 bp
Accession: NZ_CP010124 Location: 1..86032 Organism: Escherichia coli strain C5 Replicon: plasmid B
Accession: NZ_CP010124 Location: 1..86032 Organism: Escherichia coli strain C5 Replicon: plasmid B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RG28_RS32030 () | 35..130 | + | 96 | WP_073521414.1 | chromosome partitioning protein ParB | - |
| RG28_RS29615 () | 185..619 | + | 435 | WP_061361213.1 | conjugation system SOS inhibitor PsiB | - |
| RG28_RS29620 () | 616..1335 | + | 720 | WP_061361214.1 | plasmid SOS inhibition protein A | - |
| RG28_RS29625 () | 1335..1691 | + | 357 | Protein_4 | hypothetical protein | - |
| RG28_RS29630 () | 1720..3291 | - | 1572 | WP_073521364.1 | IS66 family transposase ISCro1 | Transposase |
| RG28_RS29635 () | 3311..3658 | - | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| RG28_RS29640 () | 3658..4308 | - | 651 | WP_061354651.1 | IS66 family transposase IS679 | Transposase |
| - () | 4541..4675 | + | 135 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4541..4675 | + | 135 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4541..4675 | + | 135 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4541..4675 | + | 135 | NuclAT_0 | - | Antitoxin Detail |
| RG28_RS29650 () | 4741..4920 | + | 180 | WP_073521365.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| RG28_RS29660 () | 5485..7164 | + | 1680 | WP_077897899.1 | group II intron reverse transcriptase/maturase | - |
| RG28_RS29675 () | 7922..8128 | + | 207 | WP_061361210.1 | hypothetical protein | - |
| RG28_RS29680 () | 8152..8448 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| RG28_RS29685 () | 8557..9378 | + | 822 | WP_001234447.1 | DUF945 domain-containing protein | - |
| RG28_RS29690 () | 9656..10105 | - | 450 | WP_061358377.1 | hypothetical protein | VF |
| RG28_RS29700 () | 10617..11012 | + | 396 | WP_072279341.1 | relaxosome protein TraM | - |
| RG28_RS29705 () | 11172..11903 | + | 732 | WP_061330007.1 | hypothetical protein | - |
| RG28_RS29710 () | 11987..12193 | + | 207 | WP_073521368.1 | TraY domain-containing protein | - |
| RG28_RS29715 () | 12494..12865 | + | 372 | WP_061330009.1 | conjugal transfer protein TraA | - |
| RG28_RS29720 () | 12896..13195 | + | 300 | WP_001204091.1 | type IV conjugative transfer system protein TraL | - |
| RG28_RS29725 () | 13206..13784 | + | 579 | WP_061330010.1 | type IV conjugative transfer system protein TraE | - |
| RG28_RS29730 () | 13759..14538 | + | 780 | WP_073521369.1 | F-type conjugal transfer protein TraK | - |
| RG28_RS29735 () | 14531..15871 | + | 1341 | WP_061330012.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| RG28_RS29740 () | 15874..16284 | + | 411 | WP_061330013.1 | hypothetical protein | - |
| RG28_RS29745 () | 16342..16863 | + | 522 | WP_137547295.1 | hypothetical protein | - |
| RG28_RS29750 () | 16901..17413 | + | 513 | WP_073521374.1 | type IV conjugative transfer system lipoprotein TraV | - |
| RG28_RS29755 () | 17410..20049 | + | 2640 | WP_073521378.1 | type IV secretion system protein TraC | - |
| RG28_RS29760 () | 20028..20444 | + | 417 | WP_061358373.1 | type-F conjugative transfer system protein TrbI | - |
| RG28_RS29765 () | 20447..20671 | + | 225 | WP_061358374.1 | TraR/DksA C4-type zinc finger protein | - |
| RG28_RS29770 () | 20668..21285 | + | 618 | WP_077875751.1 | type-F conjugative transfer system protein TraW | - |
| RG28_RS29775 () | 21282..21677 | + | 396 | WP_061330018.1 | hypothetical protein | - |
| RG28_RS29780 () | 21674..22672 | + | 999 | WP_063848397.1 | conjugal transfer pilus assembly protein TraU | - |
| RG28_RS29785 () | 22729..23490 | + | 762 | WP_073521379.1 | hypothetical protein | - |
| RG28_RS29790 () | 23530..24105 | + | 576 | WP_061330021.1 | conjugal transfer protein TraP | - |
| RG28_RS29795 () | 24182..24526 | + | 345 | WP_073521380.1 | hypothetical protein | - |
| RG28_RS29800 () | 24516..24968 | + | 453 | WP_170995349.1 | hypothetical protein | - |
| RG28_RS29805 () | 25041..25613 | + | 573 | WP_073521415.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| RG28_RS29810 () | 25610..27544 | + | 1935 | WP_073521387.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| RG28_RS29815 () | 27546..28331 | + | 786 | WP_061330025.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| RG28_RS29820 () | 28349..28621 | + | 273 | WP_073521388.1 | hypothetical protein | - |
| RG28_RS29825 () | 28623..29210 | + | 588 | WP_073521389.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| RG28_RS29830 () | 29262..30668 | + | 1407 | WP_073521390.1 | conjugal transfer protein TraH | - |
| RG28_RS29835 () | 30668..33559 | + | 2892 | WP_073521391.1 | conjugal transfer mating pair stabilization protein TraG | - |
| RG28_RS29840 () | 33574..34224 | + | 651 | WP_073521416.1 | hypothetical protein | - |
| RG28_RS29845 () | 34296..35033 | + | 738 | WP_073521392.1 | complement resistance protein TraT | - |
| RG28_RS29850 () | 35162..35854 | + | 693 | WP_073521394.1 | hypothetical protein | - |
| RG28_RS29855 () | 35861..36364 | + | 504 | WP_073521396.1 | DUF2726 domain-containing protein | - |
| RG28_RS29860 () | 36381..36779 | - | 399 | WP_061358607.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| RG28_RS29865 () | 36779..37006 | - | 228 | WP_073521399.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| RG28_RS29870 () | 37139..39328 | + | 2190 | WP_061361235.1 | type IV conjugative transfer system coupling protein TraD | - |
| RG28_RS29875 () | 39328..44544 | + | 5217 | WP_061361236.1 | Multifunctional conjugation protein TraI | Relaxase |
| RG28_RS29880 () | 44592..44750 | + | 159 | Protein_50 | type-F conjugative transfer system pilin acetylase TraX | - |
| RG28_RS29885 () | 44825..45385 | + | 561 | WP_052929168.1 | fertility inhibition protein FinO | - |
| RG28_RS29890 () | 45519..45731 | + | 213 | WP_052929167.1 | ANR family transcriptional regulator | - |
| RG28_RS29895 () | 45974..46435 | + | 462 | WP_001620828.1 | thermonuclease family protein | - |
| RG28_RS29900 () | 46481..46690 | + | 210 | WP_001299729.1 | hemolysin expression modulator Hha | - |
| RG28_RS29905 () | 46728..47318 | + | 591 | WP_061361238.1 | DUF2726 domain-containing protein | - |
| RG28_RS29910 () | 47472..47945 | + | 474 | WP_061330037.1 | hypothetical protein | - |
| - () | 48088..48146 | - | 59 | NuclAT_1 | - | - |
| - () | 48088..48146 | - | 59 | NuclAT_1 | - | - |
| - () | 48088..48146 | - | 59 | NuclAT_1 | - | - |
| - () | 48088..48146 | - | 59 | NuclAT_1 | - | - |
| RG28_RS29920 () | 48136..48342 | + | 207 | WP_001558272.1 | type I toxin-antitoxin system Hok family toxin | - |
| RG28_RS29925 () | 48626..48883 | + | 258 | WP_000083826.1 | replication regulatory protein RepA | - |
| RG28_RS29935 () | 49118..49192 | + | 75 | WP_032319616.1 | RepA leader peptide Tap | - |
| RG28_RS29940 () | 49185..50207 | + | 1023 | WP_073521400.1 | replication initiation protein | - |
| RG28_RS29955 () | 51110..51340 | + | 231 | WP_001559850.1 | hypothetical protein | - |
| RG28_RS29960 () | 51327..51653 | + | 327 | WP_061358720.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| RG28_RS29965 () | 51881..52018 | - | 138 | WP_072320478.1 | colicin release lysis protein | - |
| RG28_RS29970 () | 52046..52570 | + | 525 | WP_061358719.1 | colicin N immunity protein | - |
| RG28_RS29975 () | 52679..53380 | + | 702 | Protein_65 | ISL3 family transposase ISEc38 | Transposase |
| RG28_RS29985 () | 53431..53667 | - | 237 | Protein_66 | transposase zinc-binding domain-containing protein | - |
| RG28_RS29990 () | 53667..54032 | - | 366 | WP_061358468.1 | hypothetical protein | - |
| RG28_RS29995 () | 54354..54677 | - | 324 | WP_061361472.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| RG28_RS30000 () | 54674..54925 | - | 252 | WP_061358733.1 | antitoxin | - |
| RG28_RS31675 () | 55077..55252 | - | 176 | Protein_70 | transposase | - |
| RG28_RS30010 () | 55256..55522 | - | 267 | WP_063610219.1 | Major pilu subunit operon regulatory protein PapB | VF |
| RG28_RS30015 () | 55780..56625 | - | 846 | WP_072320527.1 | AraC family transcriptional regulator | - |
| RG28_RS30025 () | 57149..58768 | - | 1620 | WP_073521401.1 | ISL3 family transposase ISEc38 | Transposase |
| RG28_RS30035 () | 60126..60365 | + | 240 | WP_072320500.1 | Major pilu subunit operon regulatory protein PapB | VF |
| RG28_RS30040 () | 60523..61071 | + | 549 | WP_061358398.1 | hypothetical protein | VF |
| RG28_RS30045 () | 61221..63647 | + | 2427 | WP_061358399.1 | Outer membrane usher protein FimD | VF |
| RG28_RS30050 () | 63640..64350 | + | 711 | WP_061358400.1 | Chaperone protein FaeE | VF |
| RG28_RS30055 () | 64347..64907 | + | 561 | WP_061361387.1 | hypothetical protein | - |
| RG28_RS30065 () | 66464..66736 | + | 273 | WP_061358403.1 | hypothetical protein | - |
| RG28_RS31685 () | 66750..66902 | + | 153 | WP_106426530.1 | Rop family plasmid primer RNA-binding protein | - |
| RG28_RS30070 () | 67354..68505 | + | 1152 | WP_061358723.1 | Alcohol dehydrogenase 2 | VF |
| RG28_RS30075 () | 69165..69494 | + | 330 | WP_001137792.1 | IS66 family transposase ISEc49 | Transposase |
| RG28_RS30080 () | 69481..69861 | + | 381 | WP_040089119.1 | IS66 family transposase ISEc49 | Transposase |
| RG28_RS30090 () | 69904..71488 | + | 1585 | Protein_84 | IS66 family transposase ISEc49 | Transposase |
| RG28_RS32035 () | 71472..71795 | - | 324 | WP_187655803.1 | hypothetical protein | - |
| RG28_RS30100 () | 71843..72034 | + | 192 | Protein_86 | helix-turn-helix transcriptional regulator | - |
| RG28_RS30105 () | 72052..72330 | + | 279 | WP_072320521.1 | plasmid stabilization protein | - |
| RG28_RS30110 () | 72362..72619 | + | 258 | WP_061358346.1 | hypothetical protein | - |
| RG28_RS30115 () | 72984..73271 | - | 288 | WP_061358347.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RG28_RS30120 () | 73268..73519 | - | 252 | WP_061358348.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| RG28_RS32195 () | 73793..74017 | + | 225 | Protein_91 | hypothetical protein | - |
| RG28_RS30135 () | 74124..74387 | + | 264 | WP_061358349.1 | hypothetical protein | - |
| RG28_RS30140 () | 74377..74676 | + | 300 | WP_000119541.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| RG28_RS31690 () | 75208..75288 | + | 81 | Protein_94 | plasmid replication protein | - |
| RG28_RS30155 () | 75490..76113 | - | 624 | WP_061361454.1 | potassium channel family protein | - |
| RG28_RS30165 () | 76983..77990 | + | 1008 | WP_073521408.1 | hypothetical protein | - |
| RG28_RS30170 () | 78060..78455 | - | 396 | WP_061361453.1 | plasmid partitioning/stability family protein | - |
| RG28_RS30175 () | 78455..79414 | - | 960 | WP_000921957.1 | plasmid segregation protein ParM | - |
| RG28_RS30180 () | 79853..80755 | + | 903 | WP_077897900.1 | DUF1281 domain-containing protein | - |
| RG28_RS30185 () | 80759..81064 | + | 306 | WP_073521410.1 | hypothetical protein | - |
| RG28_RS30190 () | 81141..81824 | + | 684 | WP_073521411.1 | DNA methylase | - |
| RG28_RS30195 () | 81825..82046 | + | 222 | WP_001104893.1 | hypothetical protein | - |
| RG28_RS30200 () | 82058..82492 | + | 435 | WP_073521412.1 | DUF1380 family protein | - |
| RG28_RS32040 () | 82537..83307 | + | 771 | WP_181655048.1 | hypothetical protein | - |
| RG28_RS30215 () | 83844..84146 | + | 303 | WP_072106536.1 | antirestriction protein | - |
| RG28_RS30220 () | 84195..84386 | + | 192 | WP_061361427.1 | hypothetical protein | - |
| RG28_RS32045 () | 84365..84701 | - | 337 | Protein_107 | pilus assembly protein | - |
| RG28_RS30240 () | 85378..85608 | + | 231 | WP_033801047.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|