Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/VapC-VagC |
Location | 36381..37006 | Replicon | plasmid B |
Accession | NZ_CP010124 | ||
Organism | Escherichia coli strain C5 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | A0A1L4J644 |
Locus tag | RG28_RS29860 | Protein ID | WP_061358607.1 |
Coordinates | 36381..36779 (-) | Length | 133 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | A0A1L4J6D3 |
Locus tag | RG28_RS29865 | Protein ID | WP_073521399.1 |
Coordinates | 36779..37006 (-) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
RG28_RS29840 | 33574..34224 | + | 651 | WP_073521416.1 | hypothetical protein | - |
RG28_RS29845 | 34296..35033 | + | 738 | WP_073521392.1 | complement resistance protein TraT | - |
RG28_RS29850 | 35162..35854 | + | 693 | WP_073521394.1 | hypothetical protein | - |
RG28_RS29855 | 35861..36364 | + | 504 | WP_073521396.1 | DUF2726 domain-containing protein | - |
RG28_RS29860 | 36381..36779 | - | 399 | WP_061358607.1 | tRNA(fMet)-specific endonuclease VapC | Toxin |
RG28_RS29865 | 36779..37006 | - | 228 | WP_073521399.1 | toxin-antitoxin system antitoxin VapB | Antitoxin |
RG28_RS29870 | 37139..39328 | + | 2190 | WP_061361235.1 | type IV conjugative transfer system coupling protein TraD | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..86032 | 86032 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 133 a.a. Molecular weight: 14945.31 Da Isoelectric Point: 8.1432
>T50525 WP_061358607.1 NZ_CP010124:c36779-36381 [Escherichia coli]
MLKFMLDTNICIFTIKNKPAHIRERFNLNTGRMCISSVTVMELVYGAEKSQFPERNLAIIEGFISRLDVLDYDCAAATHT
GQIRAELARQGRPVGPFDQMIAGHARSRGLIVVTSNTREFERIAGLRLEDWC
MLKFMLDTNICIFTIKNKPAHIRERFNLNTGRMCISSVTVMELVYGAEKSQFPERNLAIIEGFISRLDVLDYDCAAATHT
GQIRAELARQGRPVGPFDQMIAGHARSRGLIVVTSNTREFERIAGLRLEDWC
Download Length: 399 bp
>T50525 NZ_CP010124:c36779-36381 [Escherichia coli]
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACCATCAAAAATAAACCAGCGCATATCCGGGAGCGTTTCAA
TCTGAATACAGGGCGAATGTGCATCAGCTCAGTGACCGTGATGGAACTGGTATACGGTGCTGAAAAAAGTCAGTTTCCGG
AGCGTAATCTCGCGATTATCGAAGGATTTATTTCGCGCCTTGATGTGCTGGATTACGACTGCGCTGCTGCCACACATACC
GGTCAGATCCGTGCTGAGCTCGCCCGTCAGGGACGTCCGGTTGGGCCGTTTGATCAGATGATTGCCGGTCATGCCCGCAG
CCGGGGACTCATTGTGGTCACAAGCAATACCCGGGAGTTTGAACGTATCGCCGGCCTTCGTCTGGAAGACTGGTGTTAA
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACCATCAAAAATAAACCAGCGCATATCCGGGAGCGTTTCAA
TCTGAATACAGGGCGAATGTGCATCAGCTCAGTGACCGTGATGGAACTGGTATACGGTGCTGAAAAAAGTCAGTTTCCGG
AGCGTAATCTCGCGATTATCGAAGGATTTATTTCGCGCCTTGATGTGCTGGATTACGACTGCGCTGCTGCCACACATACC
GGTCAGATCCGTGCTGAGCTCGCCCGTCAGGGACGTCCGGTTGGGCCGTTTGATCAGATGATTGCCGGTCATGCCCGCAG
CCGGGGACTCATTGTGGTCACAAGCAATACCCGGGAGTTTGAACGTATCGCCGGCCTTCGTCTGGAAGACTGGTGTTAA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8354.33 Da Isoelectric Point: 4.3569
>AT50525 WP_073521399.1 NZ_CP010124:c37006-36779 [Escherichia coli]
METTVFLSNRSQAVRLPKAVALPEDVKKVDVIAVGRTRIITPAGESWDSWFDGDGVSSDFMNDREQPAVQERDAF
METTVFLSNRSQAVRLPKAVALPEDVKKVDVIAVGRTRIITPAGESWDSWFDGDGVSSDFMNDREQPAVQERDAF
Download Length: 228 bp
>AT50525 NZ_CP010124:c37006-36779 [Escherichia coli]
ATGGAAACCACAGTATTTCTCAGTAACCGGAGTCAGGCAGTCAGGCTGCCGAAAGCTGTAGCCCTGCCTGAAGACGTAAA
AAAAGTCGACGTTATTGCTGTTGGCCGTACCCGGATCATTACCCCGGCAGGAGAGTCCTGGGACAGCTGGTTCGATGGCG
ACGGTGTCAGCTCAGATTTCATGAATGACAGGGAACAACCCGCCGTACAGGAAAGGGACGCATTCTGA
ATGGAAACCACAGTATTTCTCAGTAACCGGAGTCAGGCAGTCAGGCTGCCGAAAGCTGTAGCCCTGCCTGAAGACGTAAA
AAAAGTCGACGTTATTGCTGTTGGCCGTACCCGGATCATTACCCCGGCAGGAGAGTCCTGGGACAGCTGGTTCGATGGCG
ACGGTGTCAGCTCAGATTTCATGAATGACAGGGAACAACCCGCCGTACAGGAAAGGGACGCATTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1L4J644 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1L4J6D3 |