MGE detailed information
MGE type: Prophage MGE length: 46352 bp
Accession: NZ_CP007454 Location: 1846270..1892621 Organism: Staphylococcus aureus strain 502A isolate RN6607 Replicon: chromosome
Accession: NZ_CP007454 Location: 1846270..1892621 Organism: Staphylococcus aureus strain 502A isolate RN6607 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH52_RS09250 () | 1842003..1842287 | + | 285 | WP_000917289.1 | co-chaperone GroES | - |
| CH52_RS09255 () | 1842363..1843979 | + | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| CH52_RS09260 () | 1844519..1845826 | - | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| CH52_RS09265 () | 1846270..1847493 | - | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| CH52_RS09270 () | 1847929..1848984 | + | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| CH52_RS09275 () | 1849006..1850022 | + | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| CH52_RS09280 () | 1850260..1851090 | - | 831 | Protein_1774 | sphingomyelin phosphodiesterase | - |
| CH52_RS09285 () | 1851141..1852178 | - | 1038 | WP_000857176.1 | site-specific integrase | - |
| CH52_RS09290 () | 1852286..1852900 | + | 615 | WP_000191459.1 | hypothetical protein | - |
| CH52_RS09295 () | 1852897..1853043 | - | 147 | WP_001013104.1 | hypothetical protein | - |
| CH52_RS09300 () | 1853079..1853261 | - | 183 | WP_000705243.1 | hypothetical protein | - |
| CH52_RS09305 () | 1853461..1854231 | - | 771 | WP_001208482.1 | helix-turn-helix domain-containing protein | - |
| CH52_RS09310 () | 1854390..1854614 | + | 225 | WP_000338185.1 | DUF739 family protein | - |
| CH52_RS09315 () | 1854632..1854892 | + | 261 | WP_000435341.1 | transcriptional regulator | - |
| CH52_RS09320 () | 1854916..1855455 | - | 540 | WP_000351243.1 | hypothetical protein | - |
| CH52_RS09325 () | 1855512..1856261 | + | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| CH52_RS09330 () | 1856277..1856474 | + | 198 | WP_001148855.1 | hypothetical protein | - |
| CH52_RS09335 () | 1856505..1856645 | + | 141 | WP_000939496.1 | hypothetical protein | - |
| CH52_RS09340 () | 1856660..1857292 | - | 633 | WP_000275058.1 | hypothetical protein | - |
| CH52_RS09345 () | 1857351..1857671 | + | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| CH52_RS09350 () | 1857668..1857829 | + | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| CH52_RS09355 () | 1857922..1858182 | + | 261 | WP_000291488.1 | DUF1108 family protein | - |
| CH52_RS09360 () | 1858192..1858413 | + | 222 | WP_000815404.1 | DUF2483 domain-containing protein | - |
| CH52_RS09365 () | 1858406..1859185 | + | 780 | WP_025444512.1 | ATP-binding protein | - |
| CH52_RS09370 () | 1859216..1859767 | + | 552 | WP_000704705.1 | single-stranded DNA-binding protein | - |
| CH52_RS09375 () | 1859780..1860451 | + | 672 | WP_001199416.1 | hypothetical protein | - |
| CH52_RS15030 () | 1860448..1860597 | + | 150 | WP_001081076.1 | hypothetical protein | - |
| CH52_RS09380 () | 1860590..1860871 | - | 282 | WP_000414755.1 | hypothetical protein | - |
| CH52_RS09385 () | 1860937..1861707 | + | 771 | WP_000190253.1 | conserved phage C-terminal domain-containing protein | - |
| CH52_RS09390 () | 1861717..1862496 | + | 780 | WP_000803062.1 | ATP-binding protein | - |
| CH52_RS09395 () | 1862490..1862648 | + | 159 | WP_000256589.1 | hypothetical protein | - |
| CH52_RS09400 () | 1862661..1862882 | + | 222 | WP_001123674.1 | DUF3269 family protein | - |
| CH52_RS09405 () | 1862893..1863297 | + | 405 | Protein_1800 | DUF1064 domain-containing protein | - |
| CH52_RS09410 () | 1863302..1863487 | + | 186 | WP_001187234.1 | DUF3113 family protein | - |
| CH52_RS09415 () | 1863488..1863859 | + | 372 | WP_001029545.1 | hypothetical protein | - |
| CH52_RS09420 () | 1863860..1864108 | + | 249 | WP_001126839.1 | phi PVL orf 51-like protein | - |
| CH52_RS09425 () | 1864172..1864519 | + | 348 | WP_000982695.1 | hypothetical protein | - |
| CH52_RS09430 () | 1864516..1864905 | + | 390 | WP_000219085.1 | acetyltransferase | - |
| CH52_RS09435 () | 1864898..1865152 | + | 255 | WP_001065078.1 | DUF1024 family protein | - |
| CH52_RS09440 () | 1865139..1865309 | + | 171 | WP_000714407.1 | hypothetical protein | - |
| CH52_RS09445 () | 1865302..1865838 | + | 537 | WP_001066448.1 | dUTP diphosphatase | - |
| CH52_RS09450 () | 1865875..1866048 | + | 174 | WP_001209216.1 | hypothetical protein | - |
| CH52_RS09455 () | 1866065..1866271 | + | 207 | WP_000195759.1 | DUF1381 domain-containing protein | - |
| CH52_RS09460 () | 1866268..1866417 | + | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| CH52_RS09465 () | 1866417..1866617 | + | 201 | WP_001794311.1 | DUF1514 family protein | - |
| CH52_RS09475 () | 1866640..1867128 | + | 489 | WP_000282749.1 | hypothetical protein | - |
| CH52_RS09480 () | 1867243..1867695 | + | 453 | WP_000406194.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| CH52_RS09485 () | 1867711..1868055 | + | 345 | WP_000817289.1 | HNH endonuclease | - |
| CH52_RS09490 () | 1868185..1868652 | + | 468 | WP_000919026.1 | phage terminase small subunit P27 family | - |
| CH52_RS09495 () | 1868655..1870349 | + | 1695 | WP_000133304.1 | phage terminase large subunit | - |
| CH52_RS09500 () | 1870363..1870563 | + | 201 | WP_000365300.1 | hypothetical protein | - |
| CH52_RS09505 () | 1870569..1871819 | + | 1251 | WP_000511067.1 | phage portal protein | - |
| CH52_RS09510 () | 1871812..1872396 | + | 585 | WP_000032525.1 | HK97 family phage prohead protease | - |
| CH52_RS09515 () | 1872484..1873731 | + | 1248 | WP_000849950.1 | phage major capsid protein | - |
| CH52_RS09520 () | 1873767..1873925 | + | 159 | WP_001252099.1 | hypothetical protein | - |
| CH52_RS09525 () | 1873934..1874266 | + | 333 | WP_001177487.1 | head-tail connector protein | - |
| CH52_RS09530 () | 1874253..1874588 | + | 336 | WP_000975314.1 | head-tail adaptor protein | - |
| CH52_RS09535 () | 1874588..1874965 | + | 378 | WP_000501244.1 | HK97 gp10 family phage protein | - |
| CH52_RS09540 () | 1874962..1875342 | + | 381 | WP_000611452.1 | hypothetical protein | - |
| CH52_RS09545 () | 1875343..1876296 | + | 954 | WP_000570652.1 | Ig-like domain-containing protein | - |
| CH52_RS09550 () | 1876361..1876807 | + | 447 | WP_000442601.1 | hypothetical protein | - |
| CH52_RS09555 () | 1876867..1876989 | + | 123 | WP_000570353.1 | hypothetical protein | - |
| CH52_RS09560 () | 1877045..1881697 | + | 4653 | WP_001133528.1 | phage tail tape measure protein | - |
| CH52_RS09565 () | 1881697..1883187 | + | 1491 | WP_001154327.1 | phage tail family protein | - |
| CH52_RS09570 () | 1883203..1886988 | + | 3786 | WP_000582137.1 | hypothetical protein | - |
| CH52_RS09575 () | 1886978..1887130 | + | 153 | WP_001153681.1 | hypothetical protein | - |
| CH52_RS09580 () | 1887177..1887464 | + | 288 | WP_001040261.1 | hypothetical protein | - |
| CH52_RS09585 () | 1887522..1887818 | + | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| CH52_RS14650 () | 1887968..1888144 | + | 177 | WP_011447039.1 | putative holin-like toxin | Toxin Detail |
| - () | 1888132..1888306 | - | 175 | - | - | Antitoxin Detail |
| CH52_RS09600 () | 1888356..1888610 | + | 255 | WP_000611512.1 | phage holin | - |
| CH52_RS09605 () | 1888622..1889377 | + | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| CH52_RS09610 () | 1889568..1890059 | + | 492 | WP_000920041.1 | staphylokinase | - |
| CH52_RS14905 () | 1890709..1891044 | + | 336 | Protein_1841 | SH3 domain-containing protein | - |
| CH52_RS09620 () | 1891139..1891588 | - | 450 | WP_000727643.1 | chemotaxis-inhibiting protein CHIPS | - |
| CH52_RS09625 () | 1892271..1892621 | + | 351 | WP_000702262.1 | complement inhibitor SCIN-A | - |
| CH52_RS09630 () | 1892674..1892934 | - | 261 | WP_001791826.1 | hypothetical protein | - |
| CH52_RS09640 () | 1893245..1893424 | - | 180 | WP_000669789.1 | hypothetical protein | - |
| CH52_RS09645 () | 1893746..1893996 | - | 251 | Protein_1846 | sphingomyelin phosphodiesterase | - |
| CH52_RS09650 () | 1894382..1895812 | + | 1431 | WP_001557458.1 | extracellular adherence protein Eap/Map | - |
| CH52_RS09655 () | 1895827..1896117 | + | 291 | WP_000671712.1 | MAP domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Staphylococcus aureus subsp. aureus NCTC 8325 | Prophage | TA21487 | NC_007795 | 2033113..2088736 | 0.007 | |
| Staphylococcus aureus strain HG003 isolate RN1 Scaffold_5 | Prophage | TA10146 | NZ_JPPU01000005 | 180..39322 | 0.004 |