MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 88388 bp
Accession: NZ_AP027961 Location: 1..88388 Organism: Escherichia coli strain VE-T2 Replicon: plasmid pVE-T2_1
Accession: NZ_AP027961 Location: 1..88388 Organism: Escherichia coli strain VE-T2 Replicon: plasmid pVE-T2_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQK13_RS23780 (1) | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| QQK13_RS23785 (1263) | 1263..2003 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| QQK13_RS23790 (2124) | 2124..2319 | - | 196 | Protein_2 | serine/threonine protein kinase | - |
| QQK13_RS23795 (2406) | 2406..2816 | - | 411 | Protein_3 | IS3 family transposase ISEhe3 | Transposase |
| QQK13_RS23800 (2879) | 2879..3583 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| QQK13_RS23805 (3637) | 3637..4104 | + | 468 | Protein_5 | conjugal transfer protein | - |
| QQK13_RS23810 (4349) | 4349..4465 | + | 117 | WP_001814923.1 | tetracycline resistance determinant leader peptide | - |
| QQK13_RS23815 (4481) | 4481..6400 | + | 1920 | WP_025989258.1 | Tetracycline resistance protein TetM from transposon TnFO1 | VF |
| QQK13_RS23820 (6519) | 6519..6686 | + | 168 | WP_000336323.1 | cysteine-rich KTR domain-containing protein | - |
| QQK13_RS23825 (6947) | 6947..7579 | + | 633 | WP_020802982.1 | IS256 family transposase IS406 | Transposase |
| QQK13_RS23830 (7826) | 7826..8158 | - | 333 | WP_000800531.1 | quaternary ammonium compound efflux SMR transporter QacL | - |
| QQK13_RS23835 (8281) | 8281..9119 | - | 839 | Protein_11 | Streptomycin 3''-adenylyltransferase | ARG |
| QQK13_RS23840 (9212) | 9212..10471 | - | 1260 | WP_000095725.1 | Bicyclomycin resistance protein | ARG |
| QQK13_RS23845 (10686) | 10686..11524 | - | 839 | Protein_13 | Streptomycin 3''-adenylyltransferase | ARG |
| QQK13_RS23850 (11530) | 11530..11820 | - | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| QQK13_RS23855 (11932) | 11932..12429 | - | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| QQK13_RS23860 (12574) | 12574..13587 | + | 1014 | WP_000845039.1 | IS91 family transposase ISAzo26 | Transposase |
| QQK13_RS23865 (13790) | 13790..14140 | + | 351 | WP_071830595.1 | DUF3330 domain-containing protein | - |
| QQK13_RS23870 (14266) | 14266..14826 | + | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| QQK13_RS23875 (14829) | 14829..17780 | + | 2952 | WP_015344976.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| QQK13_RS23880 (17714) | 17714..18190 | + | 477 | WP_223171565.1 | hypothetical protein | - |
| QQK13_RS23885 (18275) | 18275..18979 | - | 705 | WP_001067784.1 | IS6 family transposase IS1006 | Transposase |
| QQK13_RS23890 (19043) | 19043..19873 | + | 831 | Protein_22 | IS91 family transposase ISVsa3 | Transposase |
| QQK13_RS23895 (19904) | 19904..20821 | + | 918 | WP_286610649.1 | DUF3363 domain-containing protein | - |
| QQK13_RS23900 (21004) | 21004..22218 | + | 1215 | WP_058657119.1 | Bicyclomycin resistance protein | ARG |
| QQK13_RS23905 (22246) | 22246..22551 | + | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| QQK13_RS23910 (22663) | 22663..24158 | + | 1496 | Protein_26 | IS91 family transposase ISVsa3 | Transposase |
| QQK13_RS23915 (24394) | 24394..24636 | - | 243 | Protein_27 | phosphoglucosamine mutase | - |
| QQK13_RS23920 (24723) | 24723..25537 | - | 815 | Protein_28 | Dihydropteroate synthase | ARG |
| QQK13_RS23925 (25626) | 25626..26714 | + | 1089 | Protein_29 | IS4 family transposase ISAba1 | Transposase |
| QQK13_RS23930 (26910) | 26910..27197 | - | 288 | WP_230071785.1 | hypothetical protein | - |
| QQK13_RS23935 (27445) | 27445..28149 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| QQK13_RS23940 (28215) | 28215..29729 | + | 1515 | Protein_32 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| QQK13_RS23945 (29831) | 29831..30088 | + | 258 | WP_231363335.1 | hypothetical protein | - |
| QQK13_RS23950 (30197) | 30197..30433 | + | 237 | Protein_34 | IS6 family transposase IS15DII | Transposase |
| QQK13_RS23955 (30489) | 30489..31193 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| QQK13_RS23960 (31730) | 31730..32272 | - | 543 | WP_000587837.1 | AAA family ATPase | - |
| QQK13_RS23965 (32285) | 32285..33145 | - | 861 | WP_000557454.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| QQK13_RS23970 (33288) | 33288..33782 | + | 495 | Protein_38 | IS4 family transposase IS10R | Transposase |
| QQK13_RS23975 (33836) | 33836..34540 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| QQK13_RS23980 (34608) | 34608..35906 | + | 1299 | Protein_40 | Tn3 family transposase TnpA_Tn3 | Transposase |
| QQK13_RS23985 (35940) | 35940..36440 | + | 501 | Protein_41 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| QQK13_RS23990 (36474) | 36474..36662 | + | 189 | Protein_42 | IS3 family transposase | - |
| QQK13_RS23995 (36737) | 36737..37024 | - | 288 | WP_000222766.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| QQK13_RS24000 (37021) | 37021..37272 | - | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| QQK13_RS24005 (38238) | 38238..39095 | - | 858 | WP_039002220.1 | incFII family plasmid replication initiator RepA | - |
| QQK13_RS24010 (39088) | 39088..39162 | - | 75 | WP_061357229.1 | RepA leader peptide Tap | - |
| QQK13_RS24015 (39394) | 39394..39651 | - | 258 | WP_001541895.1 | replication regulatory protein RepA | - |
| QQK13_RS24020 (39919) | 39919..40068 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (40112) | 40112..40173 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (40112) | 40112..40173 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (40112) | 40112..40173 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (40112) | 40112..40173 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| QQK13_RS24025 (40515) | 40515..40727 | - | 213 | WP_001541896.1 | ANR family transcriptional regulator | - |
| QQK13_RS24030 (40862) | 40862..41422 | - | 561 | WP_000139310.1 | fertility inhibition protein FinO | - |
| QQK13_RS24035 (41477) | 41477..42091 | - | 615 | Protein_51 | conjugal transfer pilus acetylase TraX | - |
| QQK13_RS24040 (42089) | 42089..43255 | - | 1167 | Protein_52 | type IV secretion system DNA-binding domain-containing protein | - |
| QQK13_RS24045 (43321) | 43321..43554 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| QQK13_RS24050 (43611) | 43611..44150 | - | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| QQK13_RS24055 (44468) | 44468..44977 | + | 510 | WP_071600123.1 | hypothetical protein | - |
| QQK13_RS24060 (44947) | 44947..45138 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| QQK13_RS24065 (45135) | 45135..45557 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| QQK13_RS24070 (45604) | 45604..46029 | - | 426 | WP_001198918.1 | antirestriction protein | - |
| QQK13_RS24075 (46442) | 46442..47218 | - | 777 | WP_001005035.1 | hypothetical protein | - |
| QQK13_RS24080 (47264) | 47264..47818 | - | 555 | WP_077248347.1 | DUF1380 family protein | - |
| QQK13_RS24085 (47712) | 47712..47933 | - | 222 | WP_001104870.1 | hypothetical protein | - |
| QQK13_RS24090 (47934) | 47934..48617 | - | 684 | WP_000085939.1 | DNA methylase | - |
| QQK13_RS24095 (48694) | 48694..48999 | - | 306 | WP_010891292.1 | hypothetical protein | - |
| QQK13_RS24100 (49003) | 49003..49904 | - | 902 | Protein_64 | DUF1281 domain-containing protein | - |
| QQK13_RS24105 (50814) | 50814..51785 | - | 972 | WP_000817035.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| QQK13_RS24110 (51785) | 51785..52951 | - | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| QQK13_RS24115 (53539) | 53539..54294 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| QQK13_RS24120 (54658) | 54658..55362 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| QQK13_RS24125 (55874) | 55874..56680 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| QQK13_RS24130 (56681) | 56681..56986 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| QQK13_RS24135 (56988) | 56988..57206 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| QQK13_RS24140 (57774) | 57774..58286 | + | 513 | WP_000151784.1 | hypothetical protein | - |
| QQK13_RS24145 (58320) | 58320..59453 | - | 1134 | WP_000545984.1 | DUF3800 domain-containing protein | - |
| QQK13_RS24150 (59620) | 59620..60393 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| QQK13_RS24155 (60406) | 60406..60906 | - | 501 | WP_000528932.1 | HEPN family nuclease | - |
| QQK13_RS24160 (61171) | 61171..61401 | + | 231 | WP_001261278.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| QQK13_RS24165 (61398) | 61398..61814 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| QQK13_RS24170 (61859) | 61859..65653 | - | 3795 | WP_001144731.1 | hypothetical protein | - |
| QQK13_RS24175 (66034) | 66034..66264 | + | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| QQK13_RS24180 (66261) | 66261..66677 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| QQK13_RS24185 (66752) | 66752..68317 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| QQK13_RS24190 (68302) | 68302..69324 | + | 1023 | WP_284344166.1 | DNA helicase UvrD | - |
| QQK13_RS24200 (70655) | 70655..72856 | - | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| QQK13_RS24205 (72882) | 72882..74215 | - | 1334 | Protein_85 | L-lysine N6-monooxygenase | VF |
| QQK13_RS24210 (74212) | 74212..75954 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| QQK13_RS24215 (75954) | 75954..76901 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| QQK13_RS24220 (76902) | 76902..78626 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| QQK13_RS24225 (78762) | 78762..79955 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| QQK13_RS24230 (80335) | 80335..80715 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| QQK13_RS24235 (81056) | 81056..81469 | - | 414 | Protein_91 | phosphopyruvate hydratase | - |
| QQK13_RS24240 (81467) | 81467..81724 | + | 258 | Protein_92 | Tn3 family transposase | - |
| QQK13_RS24245 (81958) | 81958..82815 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| QQK13_RS24250 (82812) | 82812..83669 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| QQK13_RS24255 (83666) | 83666..84493 | - | 828 | WP_000983710.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| QQK13_RS24260 (84493) | 84493..85407 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| QQK13_RS24265 (85763) | 85763..86460 | + | 698 | WP_094096600.1 | IS1 family transposase IS1A | Transposase |
| QQK13_RS24270 (86640) | 86640..87153 | - | 514 | Protein_98 | DUF4113 domain-containing protein | - |
| QQK13_RS24275 (87214) | 87214..87318 | - | 105 | Protein_99 | AAA family ATPase | - |
| QQK13_RS24280 (87320) | 87320..87643 | - | 324 | Protein_100 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|