MGE detailed information
MGE type: Genomic_island MGE length: 11326 bp
Accession: NZ_AP023317 Location: 880558..891883 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4681 Replicon: chromosome
Accession: NZ_AP023317 Location: 880558..891883 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4681 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5693_RS04270 (876004) | 876004..877102 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| K5693_RS04275 (877112) | 877112..878629 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| K5693_RS04280 (878705) | 878705..879250 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| K5693_RS04285 (879515) | 879515..880273 | + | 759 | WP_000244329.1 | amidase activator ActS | - |
| K5693_RS04295 (880558) | 880558..881364 | - | 807 | WP_010989071.1 | DUF1460 domain-containing protein | - |
| K5693_RS04300 (881639) | 881639..881890 | - | 252 | WP_001540858.1 | hypothetical protein | - |
| K5693_RS04305 (882067) | 882067..882294 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| K5693_RS04310 (882294) | 882294..882692 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| K5693_RS04315 (883498) | 883498..884034 | + | 537 | WP_001038506.1 | Attachment invasion locus protein | VF |
| K5693_RS04320 (884081) | 884081..884713 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| K5693_RS04325 (885432) | 885432..886016 | + | 585 | WP_001244638.1 | putative fimbrial-like protein YbgD | VF |
| K5693_RS04330 (886136) | 886136..888625 | + | 2490 | WP_000705483.1 | Outer membrane usher protein PapC | VF |
| K5693_RS04335 (888666) | 888666..889409 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| K5693_RS04340 (889406) | 889406..890482 | + | 1077 | WP_000141329.1 | outer membrane protein | - |
| K5693_RS04345 (890626) | 890626..891138 | + | 513 | WP_000336259.1 | CaiF/GrlA family transcriptional regulator | - |
| K5693_RS04350 (891125) | 891125..891883 | + | 759 | WP_000134791.1 | transcriptional regulator | - |
| K5693_RS04355 (892093) | 892093..892959 | - | 867 | WP_000503682.1 | nickel/cobalt efflux protein RcnA | - |
| K5693_RS04360 (893081) | 893081..893353 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| K5693_RS04365 (893384) | 893384..894613 | - | 1230 | WP_000036825.1 | amino acid permease | - |
| K5693_RS04370 (894755) | 894755..895210 | - | 456 | WP_001519547.1 | multidrug/biocide efflux PACE transporter | - |
| K5693_RS04375 (895314) | 895314..896177 | + | 864 | WP_001270766.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Genomic island | TA439 | NC_003197 | 3186004..3197296 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Genomic island | TA25956 | NC_016810 | 3207430..3218010 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Genomic island | TA26056 | NC_016856 | 3205849..3216429 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0 |